Wall clock time and date at job start Tue Mar 31 2020 19:57:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 109.46865 * 2 1 4 4 C 1.52995 * 109.47101 * 240.00428 * 2 1 3 5 5 C 1.50701 * 109.47431 * 64.99688 * 4 2 1 6 6 C 1.34670 * 126.58812 * 85.03143 * 5 4 2 7 7 N 1.34125 * 108.01991 * 179.97438 * 6 5 4 8 8 C 1.30500 * 109.25569 * 359.97438 * 7 6 5 9 9 N 1.35050 * 108.70004 * 359.77285 * 8 7 6 10 10 H 0.97000 * 126.39420 * 180.26494 * 9 8 7 11 11 C 1.50695 * 109.47250 * 119.99905 * 2 1 3 12 12 O 1.21287 * 119.99641 * 100.02214 * 11 2 1 13 13 N 1.34770 * 120.00399 * 280.02857 * 11 2 1 14 14 C 1.46929 * 120.63543 * 175.11991 * 13 11 2 15 15 C 1.53195 * 108.77304 * 126.40817 * 14 13 11 16 16 C 1.53033 * 109.31228 * 54.64045 * 15 14 13 17 17 C 1.53044 * 109.53787 * 298.62815 * 16 15 14 18 18 C 1.53003 * 109.52225 * 181.33446 * 17 16 15 19 19 O 1.42899 * 109.47024 * 65.08525 * 18 17 16 20 20 N 1.46497 * 109.49517 * 301.41480 * 17 16 15 21 21 C 1.36928 * 120.00330 * 299.83615 * 20 17 16 22 22 H 1.07995 * 119.99995 * 359.72742 * 21 20 17 23 23 C 1.38809 * 119.99954 * 180.02562 * 21 20 17 24 24 N 1.31623 * 120.00082 * 359.72202 * 23 21 20 25 25 Si 1.86803 * 120.00191 * 179.72245 * 23 21 20 26 26 H 1.48504 * 109.46758 * 0.02562 * 25 23 21 27 27 H 1.48499 * 109.46934 * 119.99668 * 25 23 21 28 28 H 1.48497 * 109.47331 * 240.00165 * 25 23 21 29 29 C 1.46929 * 120.63128 * 355.13838 * 13 11 2 30 30 H 1.08994 * 109.46833 * 173.68052 * 1 2 3 31 31 H 1.08999 * 109.47313 * 293.68419 * 1 2 3 32 32 H 1.09003 * 109.46985 * 53.68075 * 1 2 3 33 33 H 1.09000 * 109.47199 * 185.00415 * 4 2 1 34 34 H 1.09007 * 109.47299 * 304.99511 * 4 2 1 35 35 H 1.08000 * 125.99150 * 359.95285 * 6 5 4 36 36 H 1.07996 * 125.64944 * 179.97438 * 8 7 6 37 37 H 1.08990 * 109.58875 * 246.19884 * 14 13 11 38 38 H 1.08995 * 109.58134 * 6.62599 * 14 13 11 39 39 H 1.09003 * 109.49220 * 174.58991 * 15 14 13 40 40 H 1.09000 * 109.50114 * 294.64936 * 15 14 13 41 41 H 1.09005 * 109.46219 * 178.60951 * 16 15 14 42 42 H 1.09004 * 109.46302 * 58.65217 * 16 15 14 43 43 H 1.09000 * 109.46905 * 185.08115 * 18 17 16 44 44 H 1.09003 * 109.47239 * 305.07756 * 18 17 16 45 45 H 0.96704 * 113.99836 * 180.02562 * 19 18 17 46 46 H 0.97007 * 119.99100 * 119.84401 * 20 17 16 47 47 H 0.96997 * 120.00024 * 179.97438 * 24 23 21 48 48 H 1.09001 * 109.58561 * 113.79968 * 29 13 11 49 49 H 1.09002 * 109.58274 * 353.37946 * 29 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 1.6413 0.0572 -2.4766 6 6 2.3075 1.0927 -3.0220 7 7 1.6244 1.5037 -4.1006 8 6 0.5605 0.7619 -4.2446 9 7 0.5359 -0.1567 -3.2550 10 1 -0.1399 -0.8393 -3.1199 11 6 2.0324 -0.7104 1.2304 12 8 2.4069 -1.8615 1.1556 13 7 2.0654 -0.0666 2.4140 14 6 2.4510 -0.7759 3.6416 15 6 3.5877 -0.0050 4.3201 16 6 3.1534 1.4454 4.5424 17 6 2.8611 2.1048 3.1926 18 6 2.4591 3.5645 3.4131 19 8 3.5674 4.2876 3.9524 20 7 4.0594 2.0493 2.3517 21 6 5.2162 2.6527 2.7674 22 1 5.2440 3.1732 3.7132 23 6 6.3514 2.6005 1.9703 24 7 6.3175 1.9664 0.8174 25 14 7.9274 3.4302 2.5338 26 1 7.7049 4.0693 3.8557 27 1 9.0062 2.4164 2.6501 28 1 8.3238 4.4638 1.5441 29 6 1.7162 1.3579 2.5014 30 1 -0.3633 -1.0214 -0.1131 31 1 -0.3634 0.4128 0.9411 32 1 -0.3633 0.6087 -0.8280 33 1 3.1263 -0.7994 -1.2056 34 1 1.6054 -1.7198 -1.2952 35 1 3.2300 1.5179 -2.6550 36 1 -0.1764 0.8634 -5.0276 37 1 1.5956 -0.8331 4.3146 38 1 2.7896 -1.7813 3.3915 39 1 3.8182 -0.4671 5.2801 40 1 4.4726 -0.0270 3.6840 41 1 3.9513 1.9901 5.0474 42 1 2.2544 1.4650 5.1584 43 1 2.1643 4.0078 2.4619 44 1 1.6220 3.6096 4.1098 45 1 3.3838 5.2225 4.1183 46 1 4.0332 1.5852 1.5003 47 1 7.1106 1.9302 0.2602 48 1 0.8007 1.4747 3.0814 49 1 1.5699 1.7604 1.4990 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733823936.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:57:32 Heat of formation + Delta-G solvation = -9.676297 kcal Electronic energy + Delta-G solvation = -31377.638982 eV Core-core repulsion = 27341.172835 eV Total energy + Delta-G solvation = -4036.466146 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.99325 -40.19554 -38.07295 -35.74282 -34.95067 -33.69094 -32.41135 -32.01024 -31.43552 -29.84494 -28.66808 -26.40751 -25.63190 -25.20342 -23.55519 -23.24714 -21.52760 -21.23873 -20.46688 -19.18221 -18.21947 -17.91001 -17.37145 -16.82460 -16.31036 -15.67748 -15.22882 -14.87532 -14.77894 -14.41912 -14.12553 -13.89905 -13.84447 -13.73076 -13.52195 -13.25262 -13.12895 -12.86460 -12.58036 -12.50995 -12.23181 -12.19744 -11.89224 -11.84582 -11.34695 -11.32184 -10.97428 -10.78643 -10.70506 -10.36196 -10.25585 -10.13869 -9.92429 -9.87035 -9.86298 -9.51419 -9.35317 -8.99440 -8.75779 -8.28429 -8.22254 -6.86261 -5.60098 -2.86904 2.08158 2.91534 3.11677 3.25077 3.34396 3.53167 3.59863 3.61934 4.51659 4.69667 4.76301 4.81976 4.85873 4.96941 5.07464 5.14512 5.30164 5.38330 5.45792 5.53254 5.54281 5.59584 5.64871 5.65735 5.74842 5.75319 5.79057 5.82224 5.84198 5.87319 5.95977 6.05213 6.11261 6.15126 6.17468 6.41731 6.43967 6.54137 6.65939 6.87573 6.89034 6.99979 7.13862 7.40032 7.70692 8.12122 8.14627 8.33683 8.47965 8.57529 9.70004 10.18828 10.55044 11.62856 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.010189 B = 0.004457 C = 0.003721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2747.449765 B = 6281.193903 C = 7523.979559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.107 4.107 3 H 0.105 0.895 4 C -0.024 4.024 5 C -0.013 4.013 6 C -0.017 4.017 7 N -0.493 5.493 8 C 0.171 3.829 9 N -0.569 5.569 10 H 0.415 0.585 11 C 0.528 3.472 12 O -0.548 6.548 13 N -0.595 5.595 14 C 0.116 3.884 15 C -0.128 4.128 16 C -0.117 4.117 17 C 0.187 3.813 18 C 0.074 3.926 19 O -0.533 6.533 20 N -0.703 5.703 21 C -0.206 4.206 22 H 0.093 0.907 23 C -0.022 4.022 24 N -0.938 5.938 25 Si 0.901 3.099 26 H -0.282 1.282 27 H -0.297 1.297 28 H -0.296 1.296 29 C 0.108 3.892 30 H 0.057 0.943 31 H 0.061 0.939 32 H 0.063 0.937 33 H 0.098 0.902 34 H 0.076 0.924 35 H 0.174 0.826 36 H 0.203 0.797 37 H 0.056 0.944 38 H 0.085 0.915 39 H 0.057 0.943 40 H 0.089 0.911 41 H 0.074 0.926 42 H 0.040 0.960 43 H 0.035 0.965 44 H 0.023 0.977 45 H 0.351 0.649 46 H 0.381 0.619 47 H 0.250 0.750 48 H 0.067 0.933 49 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.679 -3.344 -0.497 17.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.129 4.129 3 H 0.122 0.878 4 C -0.063 4.063 5 C -0.128 4.128 6 C -0.164 4.164 7 N -0.212 5.212 8 C -0.112 4.112 9 N -0.173 5.173 10 H 0.253 0.747 11 C 0.316 3.684 12 O -0.426 6.426 13 N -0.327 5.327 14 C -0.007 4.007 15 C -0.166 4.166 16 C -0.157 4.157 17 C 0.094 3.906 18 C -0.007 4.007 19 O -0.336 6.336 20 N -0.343 5.343 21 C -0.337 4.337 22 H 0.111 0.889 23 C -0.217 4.217 24 N -0.589 5.589 25 Si 0.734 3.266 26 H -0.207 1.207 27 H -0.225 1.225 28 H -0.224 1.224 29 C -0.016 4.016 30 H 0.076 0.924 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.117 0.883 34 H 0.095 0.905 35 H 0.192 0.808 36 H 0.220 0.780 37 H 0.074 0.926 38 H 0.104 0.896 39 H 0.076 0.924 40 H 0.107 0.893 41 H 0.092 0.908 42 H 0.059 0.941 43 H 0.054 0.946 44 H 0.041 0.959 45 H 0.196 0.804 46 H 0.215 0.785 47 H 0.060 0.940 48 H 0.086 0.914 49 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -16.769 -3.781 -1.027 17.221 hybrid contribution 0.066 0.129 0.570 0.588 sum -16.703 -3.653 -0.457 17.104 Atomic orbital electron populations 1.21749 0.93211 1.02162 1.02534 1.21321 0.97110 1.01814 0.92639 0.87753 1.19849 1.03035 0.96634 0.86822 1.21255 0.90995 1.02573 0.98020 1.22320 1.02055 0.97333 0.94718 1.70298 1.05384 1.26767 1.18723 1.24901 1.00170 0.90673 0.95447 1.43302 1.21618 1.28821 1.23570 0.74740 1.20376 0.77330 0.86599 0.84065 1.90654 1.48488 1.18212 1.85224 1.47833 1.66994 1.10239 1.07601 1.21586 0.97210 0.96990 0.84876 1.21799 0.99382 0.95361 1.00056 1.21875 1.00236 0.95784 0.97758 1.19953 0.88246 0.90657 0.91743 1.22712 0.87843 0.94663 0.95483 1.86947 1.37028 1.23723 1.85893 1.42340 1.06428 1.64582 1.20974 1.19559 0.87099 1.23866 1.03132 0.88942 1.24716 0.97989 1.01812 0.97155 1.69658 1.28547 1.48274 1.12375 0.86180 0.84296 0.78606 0.77526 1.20708 1.22518 1.22409 1.21934 0.97083 0.80500 1.02037 0.92369 0.91970 0.91840 0.88328 0.90546 0.80830 0.78007 0.92556 0.89632 0.92389 0.89289 0.90768 0.94141 0.94634 0.95869 0.80435 0.78517 0.93997 0.91436 0.89469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.42 8.77 37.16 0.33 -1.09 16 2 C -0.11 -1.44 1.87 -91.78 -0.17 -1.61 16 3 H 0.10 1.52 6.32 -51.93 -0.33 1.19 16 4 C -0.02 -0.33 4.63 -27.88 -0.13 -0.46 16 5 C -0.01 -0.17 5.61 -81.60 -0.46 -0.63 16 6 C -0.02 -0.26 11.79 -17.81 -0.21 -0.47 16 7 N -0.49 -7.40 11.25 -14.67 -0.16 -7.57 16 8 C 0.17 1.83 13.04 -90.37 -1.18 0.65 16 9 N -0.57 -5.48 6.01 -10.30 -0.06 -5.54 16 10 H 0.42 2.61 8.96 -40.82 -0.37 2.25 16 11 C 0.53 8.68 6.85 -10.99 -0.08 8.60 16 12 O -0.55 -10.66 15.55 5.55 0.09 -10.58 16 13 N -0.59 -9.27 2.87 -172.77 -0.50 -9.77 16 14 C 0.12 1.78 6.44 -3.71 -0.02 1.75 16 15 C -0.13 -2.18 5.93 -26.61 -0.16 -2.34 16 16 C -0.12 -1.98 4.43 -26.69 -0.12 -2.10 16 17 C 0.19 3.29 0.68 -131.70 -0.09 3.20 16 18 C 0.07 1.19 6.09 37.16 0.23 1.42 16 19 O -0.53 -9.61 9.91 -35.23 -0.35 -9.96 16 20 N -0.70 -16.04 4.22 -47.12 -0.20 -16.23 16 21 C -0.21 -5.39 8.15 -15.06 -0.12 -5.52 16 22 H 0.09 2.46 5.29 -52.49 -0.28 2.18 16 23 C -0.02 -0.63 5.50 -17.43 -0.10 -0.73 16 24 N -0.94 -27.95 13.06 55.49 0.72 -27.23 16 25 Si 0.90 22.87 29.55 -169.99 -5.02 17.85 16 26 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 27 H -0.30 -7.70 7.11 56.52 0.40 -7.30 16 28 H -0.30 -7.65 7.11 56.52 0.40 -7.25 16 29 C 0.11 1.55 4.45 -3.71 -0.02 1.53 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.60 7.59 -51.93 -0.39 0.21 16 32 H 0.06 0.60 7.46 -51.93 -0.39 0.22 16 33 H 0.10 1.56 8.14 -51.93 -0.42 1.14 16 34 H 0.08 0.96 8.06 -51.92 -0.42 0.54 16 35 H 0.17 2.82 8.06 -52.49 -0.42 2.40 16 36 H 0.20 1.29 8.06 -52.49 -0.42 0.87 16 37 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.09 1.42 7.00 -51.93 -0.36 1.06 16 39 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.09 1.93 7.53 -51.93 -0.39 1.53 16 41 H 0.07 1.46 6.99 -51.93 -0.36 1.09 16 42 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 44 H 0.02 0.31 8.14 -51.93 -0.42 -0.12 16 45 H 0.35 4.64 9.12 45.56 0.42 5.06 16 46 H 0.38 9.51 7.65 -40.82 -0.31 9.19 16 47 H 0.25 7.39 8.31 -40.82 -0.34 7.05 16 48 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 49 H 0.09 1.21 5.42 -51.93 -0.28 0.93 16 LS Contribution 384.90 15.07 5.80 5.80 Total: -1.00 -34.97 384.90 -8.81 -43.78 By element: Atomic # 1 Polarization: 24.07 SS G_CDS: -6.83 Total: 17.24 kcal Atomic # 6 Polarization: 4.51 SS G_CDS: -2.30 Total: 2.22 kcal Atomic # 7 Polarization: -66.14 SS G_CDS: -0.20 Total: -66.34 kcal Atomic # 8 Polarization: -20.28 SS G_CDS: -0.26 Total: -20.54 kcal Atomic # 14 Polarization: 22.87 SS G_CDS: -5.02 Total: 17.85 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -34.97 -8.81 -43.78 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733823936.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.100 kcal (2) G-P(sol) polarization free energy of solvation -34.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds