Wall clock time and date at job start Tue Mar 31 2020 19:57:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 109.46865 * 2 1 4 4 C 1.52995 * 109.47101 * 240.00428 * 2 1 3 5 5 C 1.50701 * 109.47431 * 64.99688 * 4 2 1 6 6 C 1.34670 * 126.58812 * 85.03143 * 5 4 2 7 7 N 1.34125 * 108.01991 * 179.97438 * 6 5 4 8 8 C 1.30500 * 109.25569 * 359.97438 * 7 6 5 9 9 N 1.35050 * 108.70004 * 359.77285 * 8 7 6 10 10 H 0.97000 * 126.39420 * 180.26494 * 9 8 7 11 11 C 1.50695 * 109.47250 * 119.99905 * 2 1 3 12 12 O 1.21287 * 119.99641 * 100.02214 * 11 2 1 13 13 N 1.34770 * 120.00399 * 280.02857 * 11 2 1 14 14 C 1.46929 * 120.63543 * 175.11991 * 13 11 2 15 15 C 1.53195 * 108.77304 * 126.40817 * 14 13 11 16 16 C 1.53033 * 109.31228 * 54.64045 * 15 14 13 17 17 C 1.53044 * 109.53787 * 298.62815 * 16 15 14 18 18 C 1.53003 * 109.52225 * 181.33446 * 17 16 15 19 19 O 1.42899 * 109.47024 * 65.08525 * 18 17 16 20 20 N 1.46497 * 109.49517 * 301.41480 * 17 16 15 21 21 C 1.36928 * 120.00330 * 299.83615 * 20 17 16 22 22 H 1.07995 * 119.99995 * 359.72742 * 21 20 17 23 23 C 1.38809 * 119.99954 * 180.02562 * 21 20 17 24 24 N 1.31623 * 120.00082 * 359.72202 * 23 21 20 25 25 Si 1.86803 * 120.00191 * 179.72245 * 23 21 20 26 26 H 1.48504 * 109.46758 * 0.02562 * 25 23 21 27 27 H 1.48499 * 109.46934 * 119.99668 * 25 23 21 28 28 H 1.48497 * 109.47331 * 240.00165 * 25 23 21 29 29 C 1.46929 * 120.63128 * 355.13838 * 13 11 2 30 30 H 1.08994 * 109.46833 * 173.68052 * 1 2 3 31 31 H 1.08999 * 109.47313 * 293.68419 * 1 2 3 32 32 H 1.09003 * 109.46985 * 53.68075 * 1 2 3 33 33 H 1.09000 * 109.47199 * 185.00415 * 4 2 1 34 34 H 1.09007 * 109.47299 * 304.99511 * 4 2 1 35 35 H 1.08000 * 125.99150 * 359.95285 * 6 5 4 36 36 H 1.07996 * 125.64944 * 179.97438 * 8 7 6 37 37 H 1.08990 * 109.58875 * 246.19884 * 14 13 11 38 38 H 1.08995 * 109.58134 * 6.62599 * 14 13 11 39 39 H 1.09003 * 109.49220 * 174.58991 * 15 14 13 40 40 H 1.09000 * 109.50114 * 294.64936 * 15 14 13 41 41 H 1.09005 * 109.46219 * 178.60951 * 16 15 14 42 42 H 1.09004 * 109.46302 * 58.65217 * 16 15 14 43 43 H 1.09000 * 109.46905 * 185.08115 * 18 17 16 44 44 H 1.09003 * 109.47239 * 305.07756 * 18 17 16 45 45 H 0.96704 * 113.99836 * 180.02562 * 19 18 17 46 46 H 0.97007 * 119.99100 * 119.84401 * 20 17 16 47 47 H 0.96997 * 120.00024 * 179.97438 * 24 23 21 48 48 H 1.09001 * 109.58561 * 113.79968 * 29 13 11 49 49 H 1.09002 * 109.58274 * 353.37946 * 29 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 1.6413 0.0572 -2.4766 6 6 2.3075 1.0927 -3.0220 7 7 1.6244 1.5037 -4.1006 8 6 0.5605 0.7619 -4.2446 9 7 0.5359 -0.1567 -3.2550 10 1 -0.1399 -0.8393 -3.1199 11 6 2.0324 -0.7104 1.2304 12 8 2.4069 -1.8615 1.1556 13 7 2.0654 -0.0666 2.4140 14 6 2.4510 -0.7759 3.6416 15 6 3.5877 -0.0050 4.3201 16 6 3.1534 1.4454 4.5424 17 6 2.8611 2.1048 3.1926 18 6 2.4591 3.5645 3.4131 19 8 3.5674 4.2876 3.9524 20 7 4.0594 2.0493 2.3517 21 6 5.2162 2.6527 2.7674 22 1 5.2440 3.1732 3.7132 23 6 6.3514 2.6005 1.9703 24 7 6.3175 1.9664 0.8174 25 14 7.9274 3.4302 2.5338 26 1 7.7049 4.0693 3.8557 27 1 9.0062 2.4164 2.6501 28 1 8.3238 4.4638 1.5441 29 6 1.7162 1.3579 2.5014 30 1 -0.3633 -1.0214 -0.1131 31 1 -0.3634 0.4128 0.9411 32 1 -0.3633 0.6087 -0.8280 33 1 3.1263 -0.7994 -1.2056 34 1 1.6054 -1.7198 -1.2952 35 1 3.2300 1.5179 -2.6550 36 1 -0.1764 0.8634 -5.0276 37 1 1.5956 -0.8331 4.3146 38 1 2.7896 -1.7813 3.3915 39 1 3.8182 -0.4671 5.2801 40 1 4.4726 -0.0270 3.6840 41 1 3.9513 1.9901 5.0474 42 1 2.2544 1.4650 5.1584 43 1 2.1643 4.0078 2.4619 44 1 1.6220 3.6096 4.1098 45 1 3.3838 5.2225 4.1183 46 1 4.0332 1.5852 1.5003 47 1 7.1106 1.9302 0.2602 48 1 0.8007 1.4747 3.0814 49 1 1.5699 1.7604 1.4990 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733823936.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:57:31 Heat of formation + Delta-G solvation = -35.932018 kcal Electronic energy + Delta-G solvation = -31378.777515 eV Core-core repulsion = 27341.172835 eV Total energy + Delta-G solvation = -4037.604680 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.97609 -41.47685 -39.45950 -37.06097 -36.09334 -35.40393 -33.69190 -33.31219 -32.88028 -30.86579 -30.44875 -27.37565 -26.90317 -26.46248 -25.52095 -24.45244 -22.57697 -22.36900 -21.53743 -20.54317 -19.55315 -19.15045 -18.92119 -17.98297 -17.81438 -16.97449 -16.51330 -16.37309 -15.86926 -15.75291 -15.52802 -15.37232 -15.09707 -15.03440 -14.74249 -14.68320 -14.36340 -14.06706 -13.88523 -13.60349 -13.46403 -13.38250 -13.30594 -13.08114 -12.87591 -12.72810 -12.59963 -12.31152 -12.10447 -11.94388 -11.74833 -11.67662 -11.55815 -11.21652 -10.91105 -10.89307 -10.72428 -10.63936 -10.45528 -9.52537 -9.30193 -8.81890 -7.74978 -4.97775 1.10723 1.46869 1.48513 1.57389 1.64659 2.05736 2.24652 2.32750 2.67559 3.37096 3.51546 3.73462 3.78081 3.82132 3.87410 3.96981 4.06196 4.13157 4.23275 4.27687 4.30231 4.41437 4.46884 4.53271 4.60272 4.65782 4.67159 4.69537 4.73542 4.79246 4.84091 4.87173 4.90413 5.03534 5.05418 5.12281 5.17992 5.29694 5.36954 5.56778 5.58296 5.71058 5.78751 5.98323 6.45445 6.48276 6.64960 7.17912 7.20008 7.23695 7.55845 8.26965 8.48483 9.49064 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.010189 B = 0.004457 C = 0.003721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2747.449765 B = 6281.193903 C = 7523.979559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.099 4.099 3 H 0.089 0.911 4 C -0.017 4.017 5 C -0.003 4.003 6 C -0.052 4.052 7 N -0.540 5.540 8 C 0.196 3.804 9 N -0.550 5.550 10 H 0.436 0.564 11 C 0.520 3.480 12 O -0.586 6.586 13 N -0.596 5.596 14 C 0.118 3.882 15 C -0.123 4.123 16 C -0.109 4.109 17 C 0.171 3.829 18 C 0.076 3.924 19 O -0.568 6.568 20 N -0.713 5.713 21 C -0.169 4.169 22 H 0.094 0.906 23 C -0.095 4.095 24 N -0.977 5.977 25 Si 0.951 3.049 26 H -0.268 1.268 27 H -0.310 1.310 28 H -0.305 1.305 29 C 0.111 3.889 30 H 0.069 0.931 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.061 0.939 34 H 0.088 0.912 35 H 0.145 0.855 36 H 0.251 0.749 37 H 0.098 0.902 38 H 0.066 0.934 39 H 0.077 0.923 40 H 0.031 0.969 41 H 0.044 0.956 42 H 0.083 0.917 43 H 0.034 0.966 44 H 0.069 0.931 45 H 0.374 0.626 46 H 0.366 0.634 47 H 0.237 0.763 48 H 0.116 0.884 49 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.212 -3.039 0.733 22.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.120 4.120 3 H 0.107 0.893 4 C -0.056 4.056 5 C -0.119 4.119 6 C -0.198 4.198 7 N -0.259 5.259 8 C -0.088 4.088 9 N -0.156 5.156 10 H 0.277 0.723 11 C 0.310 3.690 12 O -0.467 6.467 13 N -0.327 5.327 14 C -0.004 4.004 15 C -0.161 4.161 16 C -0.149 4.149 17 C 0.080 3.920 18 C -0.004 4.004 19 O -0.373 6.373 20 N -0.351 5.351 21 C -0.302 4.302 22 H 0.112 0.888 23 C -0.285 4.285 24 N -0.632 5.632 25 Si 0.785 3.215 26 H -0.193 1.193 27 H -0.238 1.238 28 H -0.233 1.233 29 C -0.012 4.012 30 H 0.088 0.912 31 H 0.094 0.906 32 H 0.093 0.907 33 H 0.079 0.921 34 H 0.107 0.893 35 H 0.162 0.838 36 H 0.267 0.733 37 H 0.116 0.884 38 H 0.085 0.915 39 H 0.096 0.904 40 H 0.050 0.950 41 H 0.062 0.938 42 H 0.101 0.899 43 H 0.053 0.947 44 H 0.087 0.913 45 H 0.221 0.779 46 H 0.197 0.803 47 H 0.046 0.954 48 H 0.133 0.867 49 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -21.369 -3.440 0.286 21.647 hybrid contribution 1.371 0.039 0.275 1.399 sum -19.999 -3.401 0.561 20.293 Atomic orbital electron populations 1.21715 0.89892 1.03276 1.03767 1.21267 0.99661 1.00150 0.90960 0.89256 1.19678 1.00861 0.97490 0.87578 1.20864 0.91763 1.01522 0.97788 1.22078 1.02300 0.99146 0.96318 1.70235 1.07390 1.29056 1.19249 1.25766 0.99090 0.88717 0.95261 1.43159 1.20924 1.29007 1.22471 0.72276 1.20920 0.76752 0.86338 0.85003 1.90632 1.50221 1.20034 1.85817 1.47946 1.66404 1.10833 1.07488 1.21602 0.97895 0.95597 0.85279 1.21702 0.97899 0.96505 1.00018 1.21786 1.00990 0.94646 0.97455 1.20445 0.87309 0.92715 0.91501 1.22636 0.88391 0.92708 0.96710 1.86817 1.38730 1.25704 1.86081 1.42505 1.07556 1.63912 1.21122 1.19798 0.87813 1.20772 1.01807 0.88843 1.25318 1.00741 1.04338 0.98058 1.69811 1.28293 1.51289 1.13810 0.85335 0.81554 0.77289 0.77346 1.19302 1.23849 1.23346 1.22073 0.97245 0.79013 1.02825 0.91238 0.90603 0.90746 0.92072 0.89345 0.83776 0.73302 0.88415 0.91543 0.90446 0.95036 0.93760 0.89899 0.94742 0.91323 0.77884 0.80266 0.95369 0.86662 0.89172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.23 8.77 71.98 0.63 -1.60 16 2 C -0.10 -2.61 1.87 -11.54 -0.02 -2.63 16 3 H 0.09 2.65 6.32 -2.39 -0.02 2.63 16 4 C -0.02 -0.47 4.63 29.85 0.14 -0.33 16 5 C 0.00 -0.07 5.61 40.95 0.23 0.16 16 6 C -0.05 -1.67 11.79 83.52 0.98 -0.69 16 7 N -0.54 -16.15 11.25 -200.31 -2.25 -18.41 16 8 C 0.20 3.67 13.04 180.26 2.35 6.02 16 9 N -0.55 -9.25 6.01 -186.49 -1.12 -10.37 16 10 H 0.44 3.86 8.96 -92.71 -0.83 3.03 16 11 C 0.52 17.01 6.85 87.66 0.60 17.61 16 12 O -0.59 -23.34 15.55 -3.05 -0.05 -23.39 16 13 N -0.60 -17.64 2.87 -818.92 -2.35 -19.99 16 14 C 0.12 3.42 6.44 86.36 0.56 3.98 16 15 C -0.12 -4.09 5.93 30.67 0.18 -3.91 16 16 C -0.11 -3.44 4.43 30.62 0.14 -3.31 16 17 C 0.17 5.65 0.68 3.68 0.00 5.66 16 18 C 0.08 2.18 6.09 71.98 0.44 2.61 16 19 O -0.57 -19.22 9.91 -148.98 -1.48 -20.69 16 20 N -0.71 -33.05 4.22 -303.01 -1.28 -34.33 16 21 C -0.17 -9.08 8.15 84.03 0.68 -8.39 16 22 H 0.09 4.99 5.29 -2.91 -0.02 4.97 16 23 C -0.09 -5.57 5.50 84.86 0.47 -5.10 16 24 N -0.98 -61.77 13.06 21.65 0.28 -61.49 16 25 Si 0.95 48.96 29.55 68.60 2.03 50.99 16 26 H -0.27 -12.99 7.11 99.48 0.71 -12.28 16 27 H -0.31 -16.35 7.11 99.48 0.71 -15.65 16 28 H -0.31 -15.93 7.11 99.48 0.71 -15.22 16 29 C 0.11 2.84 4.45 86.36 0.38 3.22 16 30 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.08 1.13 7.59 -2.39 -0.02 1.12 16 32 H 0.07 1.15 7.46 -2.39 -0.02 1.13 16 33 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 34 H 0.09 2.19 8.06 -2.38 -0.02 2.18 16 35 H 0.14 5.35 8.06 -2.91 -0.02 5.33 16 36 H 0.25 2.01 8.06 -2.91 -0.02 1.99 16 37 H 0.10 2.08 8.14 -2.39 -0.02 2.06 16 38 H 0.07 2.20 7.00 -2.39 -0.02 2.18 16 39 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 40 H 0.03 1.40 7.53 -2.39 -0.02 1.38 16 41 H 0.04 1.66 6.99 -2.38 -0.02 1.65 16 42 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 43 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 44 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 45 H 0.37 8.94 9.12 -74.05 -0.68 8.27 16 46 H 0.37 19.08 7.65 -92.70 -0.71 18.38 16 47 H 0.24 15.01 8.31 -92.71 -0.77 14.24 16 48 H 0.12 1.95 8.14 -2.39 -0.02 1.93 16 49 H 0.09 2.30 5.42 -2.39 -0.01 2.29 16 Total: -1.00 -83.42 384.90 0.33 -83.08 By element: Atomic # 1 Polarization: 42.49 SS G_CDS: -1.22 Total: 41.27 kcal Atomic # 6 Polarization: 5.55 SS G_CDS: 7.76 Total: 13.31 kcal Atomic # 7 Polarization: -137.86 SS G_CDS: -6.72 Total: -144.58 kcal Atomic # 8 Polarization: -42.56 SS G_CDS: -1.52 Total: -44.08 kcal Atomic # 14 Polarization: 48.96 SS G_CDS: 2.03 Total: 50.99 kcal Total: -83.42 0.33 -83.08 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733823936.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.152 kcal (2) G-P(sol) polarization free energy of solvation -83.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds