Wall clock time and date at job start Tue Mar 31 2020 19:57:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.47557 * 2 1 4 4 C 1.53004 * 109.47129 * 120.00006 * 2 1 3 5 5 C 1.50701 * 109.46658 * 294.99848 * 4 2 1 6 6 C 1.34672 * 126.59177 * 274.68620 * 5 4 2 7 7 N 1.34130 * 108.01831 * 179.88034 * 6 5 4 8 8 C 1.30491 * 109.25957 * 0.39163 * 7 6 5 9 9 N 1.35046 * 108.69775 * 359.76294 * 8 7 6 10 10 H 0.97006 * 126.39906 * 180.02562 * 9 8 7 11 11 C 1.50701 * 109.47255 * 239.99689 * 2 1 3 12 12 O 1.21284 * 120.00198 * 263.16034 * 11 2 1 13 13 N 1.34775 * 119.99999 * 83.16205 * 11 2 1 14 14 C 1.46926 * 120.63274 * 4.71084 * 13 11 2 15 15 C 1.52756 * 109.01078 * 233.58659 * 14 13 11 16 16 C 1.53046 * 109.37996 * 305.58721 * 15 14 13 17 17 C 1.53038 * 109.53831 * 61.24025 * 16 15 14 18 18 C 1.53007 * 109.49391 * 178.68306 * 17 16 15 19 19 O 1.42898 * 109.47110 * 299.83588 * 18 17 16 20 20 N 1.46493 * 109.52502 * 58.60451 * 17 16 15 21 21 C 1.36935 * 120.00573 * 60.14480 * 20 17 16 22 22 H 1.08002 * 119.99573 * 359.97438 * 21 20 17 23 23 C 1.38810 * 120.00472 * 180.02562 * 21 20 17 24 24 N 1.31622 * 119.99686 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 120.00087 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.47095 * 359.97438 * 25 23 21 27 27 H 1.48494 * 109.47322 * 119.99868 * 25 23 21 28 28 H 1.48507 * 109.46685 * 239.99782 * 25 23 21 29 29 C 1.46933 * 120.62915 * 184.98854 * 13 11 2 30 30 H 1.08995 * 109.47184 * 305.58496 * 1 2 3 31 31 H 1.08998 * 109.47389 * 185.57718 * 1 2 3 32 32 H 1.09007 * 109.46730 * 65.57764 * 1 2 3 33 33 H 1.08995 * 109.47200 * 54.99980 * 4 2 1 34 34 H 1.09002 * 109.47406 * 175.00149 * 4 2 1 35 35 H 1.07996 * 125.98942 * 0.02562 * 6 5 4 36 36 H 1.08004 * 125.65359 * 179.77703 * 8 7 6 37 37 H 1.08998 * 109.58507 * 353.41992 * 14 13 11 38 38 H 1.08996 * 109.58959 * 113.84028 * 14 13 11 39 39 H 1.08997 * 109.56443 * 185.55121 * 15 14 13 40 40 H 1.09004 * 109.38632 * 65.50944 * 15 14 13 41 41 H 1.09004 * 109.45855 * 301.21643 * 16 15 14 42 42 H 1.08999 * 109.44829 * 181.25477 * 16 15 14 43 43 H 1.09003 * 109.47150 * 59.84136 * 18 17 16 44 44 H 1.09001 * 109.46655 * 179.83493 * 18 17 16 45 45 H 0.96704 * 113.99556 * 180.02562 * 19 18 17 46 46 H 0.97005 * 119.99563 * 240.14273 * 20 17 16 47 47 H 0.97000 * 119.99831 * 179.97438 * 24 23 21 48 48 H 1.08998 * 109.58739 * 246.15647 * 29 13 11 49 49 H 1.08993 * 109.58832 * 6.57977 * 29 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6413 0.0571 2.4765 6 6 2.3102 1.0893 3.0250 7 7 1.6243 1.5037 4.1005 8 6 0.5601 0.7624 4.2442 9 7 0.5327 -0.1529 3.2516 10 1 -0.1460 -0.8320 3.1133 11 6 2.0323 -0.7105 -1.2304 12 8 2.3524 -1.8786 -1.1680 13 7 2.1260 -0.0477 -2.4002 14 6 1.8407 1.3919 -2.4700 15 6 0.7946 1.6398 -3.5552 16 6 1.2760 1.0295 -4.8735 17 6 1.4504 -0.4815 -4.7045 18 6 1.9000 -1.0953 -6.0320 19 8 0.9119 -0.8423 -7.0327 20 7 0.1765 -1.0787 -4.2963 21 6 -0.9234 -0.9643 -5.1040 22 1 -0.8518 -0.4333 -6.0417 23 6 -2.1306 -1.5297 -4.7169 24 7 -2.2179 -2.1763 -3.5738 25 14 -3.6308 -1.3741 -5.8190 26 1 -3.2717 -0.6065 -7.0385 27 1 -4.1027 -2.7277 -6.2067 28 1 -4.7107 -0.6640 -5.0877 29 6 2.5094 -0.7524 -3.6312 30 1 -0.3633 0.5980 0.8357 31 1 -0.3634 -1.0228 0.0999 32 1 -0.3633 0.4249 -0.9358 33 1 1.6054 -1.7198 1.2952 34 1 3.1263 -0.7995 1.2057 35 1 3.2355 1.5110 2.6611 36 1 -0.1769 0.8640 5.0272 37 1 1.4570 1.7353 -1.5093 38 1 2.7538 1.9339 -2.7158 39 1 0.6483 2.7124 -3.6828 40 1 -0.1475 1.1763 -3.2623 41 1 2.2301 1.4761 -5.1535 42 1 0.5407 1.2251 -5.6540 43 1 2.8474 -0.6498 -6.3358 44 1 2.0269 -2.1710 -5.9103 45 1 1.1311 -1.2042 -7.9023 46 1 0.1121 -1.5553 -3.4539 47 1 -3.0616 -2.5711 -3.3032 48 1 3.4782 -0.3889 -3.9738 49 1 2.5667 -1.8233 -3.4365 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733823938.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:57:41 Heat of formation + Delta-G solvation = -12.013425 kcal Electronic energy + Delta-G solvation = -31091.337491 eV Core-core repulsion = 27054.769999 eV Total energy + Delta-G solvation = -4036.567492 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.14162 -40.19008 -38.04626 -35.78667 -34.96481 -33.81013 -32.45313 -31.98572 -31.33725 -30.04401 -28.65600 -26.40396 -25.62580 -25.36183 -23.60272 -22.68548 -21.76615 -21.61004 -20.73790 -18.97759 -18.16254 -17.99430 -17.34053 -16.85577 -16.35304 -15.74712 -15.10453 -14.99325 -14.88805 -14.51472 -14.22222 -13.95689 -13.76093 -13.70624 -13.49090 -13.34698 -13.24474 -12.97378 -12.59360 -12.42664 -12.21393 -12.17661 -11.88942 -11.74164 -11.34461 -11.19640 -10.97898 -10.81930 -10.73321 -10.38378 -10.33486 -10.09133 -10.08023 -10.04700 -9.89363 -9.57275 -9.36526 -8.99034 -8.78223 -8.42920 -8.23489 -6.87667 -5.63384 -2.90257 1.94909 2.91503 3.02706 3.07477 3.32980 3.48254 3.55393 3.57561 4.48506 4.64949 4.68410 4.81330 4.86882 4.99094 5.03526 5.11174 5.29493 5.34401 5.39205 5.42794 5.47949 5.55180 5.62771 5.63799 5.76555 5.79270 5.83985 5.86569 5.88829 5.92987 6.04639 6.05759 6.12628 6.13955 6.23709 6.36406 6.41986 6.53536 6.65123 6.74191 6.85711 6.98111 7.08441 7.27416 7.72543 7.96623 8.07797 8.33415 8.48971 8.54972 9.67092 10.18652 10.55343 11.59420 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.013618 B = 0.003607 C = 0.003151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2055.592055 B = 7760.126842 C = 8882.747467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.102 4.102 3 H 0.094 0.906 4 C -0.028 4.028 5 C -0.008 4.008 6 C -0.030 4.030 7 N -0.496 5.496 8 C 0.177 3.823 9 N -0.564 5.564 10 H 0.420 0.580 11 C 0.525 3.475 12 O -0.544 6.544 13 N -0.595 5.595 14 C 0.108 3.892 15 C -0.130 4.130 16 C -0.116 4.116 17 C 0.189 3.811 18 C 0.075 3.925 19 O -0.539 6.539 20 N -0.705 5.705 21 C -0.205 4.205 22 H 0.092 0.908 23 C -0.024 4.024 24 N -0.940 5.940 25 Si 0.900 3.100 26 H -0.281 1.281 27 H -0.297 1.297 28 H -0.297 1.297 29 C 0.115 3.885 30 H 0.057 0.943 31 H 0.064 0.936 32 H 0.073 0.927 33 H 0.082 0.918 34 H 0.090 0.910 35 H 0.167 0.833 36 H 0.205 0.795 37 H 0.080 0.920 38 H 0.061 0.939 39 H 0.059 0.941 40 H 0.088 0.912 41 H 0.041 0.959 42 H 0.074 0.926 43 H 0.024 0.976 44 H 0.038 0.962 45 H 0.353 0.647 46 H 0.383 0.617 47 H 0.249 0.751 48 H 0.064 0.936 49 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.830 6.862 7.767 14.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.124 4.124 3 H 0.112 0.888 4 C -0.067 4.067 5 C -0.124 4.124 6 C -0.177 4.177 7 N -0.215 5.215 8 C -0.106 4.106 9 N -0.167 5.167 10 H 0.258 0.742 11 C 0.313 3.687 12 O -0.421 6.421 13 N -0.327 5.327 14 C -0.015 4.015 15 C -0.168 4.168 16 C -0.156 4.156 17 C 0.096 3.904 18 C -0.007 4.007 19 O -0.342 6.342 20 N -0.345 5.345 21 C -0.337 4.337 22 H 0.110 0.890 23 C -0.218 4.218 24 N -0.590 5.590 25 Si 0.733 3.267 26 H -0.206 1.206 27 H -0.224 1.224 28 H -0.225 1.225 29 C -0.008 4.008 30 H 0.076 0.924 31 H 0.084 0.916 32 H 0.092 0.908 33 H 0.101 0.899 34 H 0.108 0.892 35 H 0.184 0.816 36 H 0.222 0.778 37 H 0.099 0.901 38 H 0.079 0.921 39 H 0.078 0.922 40 H 0.107 0.893 41 H 0.059 0.941 42 H 0.093 0.907 43 H 0.042 0.958 44 H 0.056 0.944 45 H 0.198 0.802 46 H 0.217 0.783 47 H 0.059 0.941 48 H 0.082 0.918 49 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 9.841 7.265 8.710 15.016 hybrid contribution -1.357 -1.346 -1.464 2.407 sum 8.484 5.919 7.246 12.630 Atomic orbital electron populations 1.21732 0.91854 1.03155 1.02989 1.21302 0.98443 1.00419 0.92227 0.88821 1.19901 1.01965 0.97695 0.87157 1.21277 0.90820 1.02394 0.97876 1.22070 1.02066 0.97921 0.95691 1.70256 1.05624 1.26741 1.18860 1.24916 0.99963 0.90441 0.95329 1.43368 1.21294 1.28997 1.23081 0.74161 1.20395 0.77108 0.86831 0.84318 1.90678 1.49721 1.16536 1.85195 1.47830 1.67825 1.09415 1.07672 1.21738 0.98776 0.80438 1.00555 1.21749 1.00111 0.99765 0.95178 1.21846 0.99792 0.96496 0.97439 1.19949 0.87959 0.92599 0.89934 1.22714 0.89191 0.98415 0.90338 1.86839 1.46242 1.80516 1.20557 1.42409 1.04441 1.63963 1.23678 1.19614 0.86947 1.26923 1.00178 0.88996 1.24718 0.97818 1.01815 0.97470 1.69697 1.24922 1.42217 1.22199 0.86185 0.83659 0.76901 0.79940 1.20633 1.22447 1.22528 1.21684 0.96330 0.98799 0.83946 0.92439 0.91649 0.90838 0.89891 0.89196 0.81571 0.77826 0.90146 0.92053 0.92217 0.89338 0.94060 0.90690 0.95825 0.94419 0.80201 0.78258 0.94148 0.91755 0.88959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.94 8.71 37.16 0.32 -1.62 16 2 C -0.10 -1.31 1.86 -91.77 -0.17 -1.48 16 3 H 0.09 1.04 6.38 -51.93 -0.33 0.71 16 4 C -0.03 -0.33 4.67 -27.88 -0.13 -0.46 16 5 C -0.01 -0.08 5.61 -81.60 -0.46 -0.54 16 6 C -0.03 -0.35 11.79 -17.81 -0.21 -0.56 16 7 N -0.50 -6.27 11.25 -14.67 -0.16 -6.43 16 8 C 0.18 1.72 13.04 -90.38 -1.18 0.54 16 9 N -0.56 -5.25 5.97 -10.30 -0.06 -5.31 16 10 H 0.42 3.01 8.96 -40.82 -0.37 2.64 16 11 C 0.53 8.56 6.82 -10.99 -0.07 8.48 16 12 O -0.54 -10.70 15.60 5.55 0.09 -10.62 16 13 N -0.60 -9.22 2.87 -173.03 -0.50 -9.72 16 14 C 0.11 1.41 6.06 -3.94 -0.02 1.38 16 15 C -0.13 -2.02 5.91 -26.83 -0.16 -2.17 16 16 C -0.12 -1.95 4.39 -26.69 -0.12 -2.07 16 17 C 0.19 3.48 0.68 -131.70 -0.09 3.39 16 18 C 0.07 1.28 6.08 37.16 0.23 1.51 16 19 O -0.54 -9.92 9.96 -35.23 -0.35 -10.27 16 20 N -0.70 -16.61 4.22 -47.12 -0.20 -16.81 16 21 C -0.21 -5.44 8.29 -15.06 -0.12 -5.56 16 22 H 0.09 2.46 5.31 -52.49 -0.28 2.18 16 23 C -0.02 -0.68 5.50 -17.43 -0.10 -0.78 16 24 N -0.94 -28.05 13.06 55.49 0.72 -27.32 16 25 Si 0.90 22.68 29.55 -169.99 -5.02 17.66 16 26 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 27 H -0.30 -7.63 7.11 56.52 0.40 -7.23 16 28 H -0.30 -7.57 7.11 56.52 0.40 -7.17 16 29 C 0.12 1.90 5.13 -3.71 -0.02 1.88 16 30 H 0.06 0.70 7.40 -51.93 -0.38 0.31 16 31 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.07 1.18 7.76 -51.93 -0.40 0.78 16 33 H 0.08 1.05 8.04 -51.93 -0.42 0.63 16 34 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.17 1.67 8.06 -52.49 -0.42 1.25 16 36 H 0.21 1.19 8.06 -52.48 -0.42 0.76 16 37 H 0.08 0.93 5.18 -51.93 -0.27 0.66 16 38 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 39 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.09 1.73 7.53 -51.93 -0.39 1.34 16 41 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 42 H 0.07 1.46 6.84 -51.93 -0.36 1.11 16 43 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 44 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 45 H 0.35 4.79 9.12 45.56 0.42 5.21 16 46 H 0.38 10.11 7.65 -40.82 -0.31 9.80 16 47 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 48 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 49 H 0.09 1.72 7.04 -51.93 -0.37 1.36 16 LS Contribution 385.12 15.07 5.80 5.80 Total: -1.00 -34.86 385.12 -8.80 -43.67 By element: Atomic # 1 Polarization: 24.23 SS G_CDS: -6.82 Total: 17.41 kcal Atomic # 6 Polarization: 4.25 SS G_CDS: -2.30 Total: 1.95 kcal Atomic # 7 Polarization: -65.40 SS G_CDS: -0.20 Total: -65.60 kcal Atomic # 8 Polarization: -20.62 SS G_CDS: -0.26 Total: -20.88 kcal Atomic # 14 Polarization: 22.68 SS G_CDS: -5.02 Total: 17.66 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -34.86 -8.80 -43.67 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733823938.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.654 kcal (2) G-P(sol) polarization free energy of solvation -34.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds