Wall clock time and date at job start Tue Mar 31 2020 19:57:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.47557 * 2 1 4 4 C 1.53004 * 109.47129 * 120.00006 * 2 1 3 5 5 C 1.50701 * 109.46658 * 294.99848 * 4 2 1 6 6 C 1.34672 * 126.59177 * 274.68620 * 5 4 2 7 7 N 1.34130 * 108.01831 * 179.88034 * 6 5 4 8 8 C 1.30491 * 109.25957 * 0.39163 * 7 6 5 9 9 N 1.35046 * 108.69775 * 359.76294 * 8 7 6 10 10 H 0.97006 * 126.39906 * 180.02562 * 9 8 7 11 11 C 1.50701 * 109.47255 * 239.99689 * 2 1 3 12 12 O 1.21284 * 120.00198 * 263.16034 * 11 2 1 13 13 N 1.34775 * 119.99999 * 83.16205 * 11 2 1 14 14 C 1.46926 * 120.63274 * 4.71084 * 13 11 2 15 15 C 1.52756 * 109.01078 * 233.58659 * 14 13 11 16 16 C 1.53046 * 109.37996 * 305.58721 * 15 14 13 17 17 C 1.53038 * 109.53831 * 61.24025 * 16 15 14 18 18 C 1.53007 * 109.49391 * 178.68306 * 17 16 15 19 19 O 1.42898 * 109.47110 * 299.83588 * 18 17 16 20 20 N 1.46493 * 109.52502 * 58.60451 * 17 16 15 21 21 C 1.36935 * 120.00573 * 60.14480 * 20 17 16 22 22 H 1.08002 * 119.99573 * 359.97438 * 21 20 17 23 23 C 1.38810 * 120.00472 * 180.02562 * 21 20 17 24 24 N 1.31622 * 119.99686 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 120.00087 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.47095 * 359.97438 * 25 23 21 27 27 H 1.48494 * 109.47322 * 119.99868 * 25 23 21 28 28 H 1.48507 * 109.46685 * 239.99782 * 25 23 21 29 29 C 1.46933 * 120.62915 * 184.98854 * 13 11 2 30 30 H 1.08995 * 109.47184 * 305.58496 * 1 2 3 31 31 H 1.08998 * 109.47389 * 185.57718 * 1 2 3 32 32 H 1.09007 * 109.46730 * 65.57764 * 1 2 3 33 33 H 1.08995 * 109.47200 * 54.99980 * 4 2 1 34 34 H 1.09002 * 109.47406 * 175.00149 * 4 2 1 35 35 H 1.07996 * 125.98942 * 0.02562 * 6 5 4 36 36 H 1.08004 * 125.65359 * 179.77703 * 8 7 6 37 37 H 1.08998 * 109.58507 * 353.41992 * 14 13 11 38 38 H 1.08996 * 109.58959 * 113.84028 * 14 13 11 39 39 H 1.08997 * 109.56443 * 185.55121 * 15 14 13 40 40 H 1.09004 * 109.38632 * 65.50944 * 15 14 13 41 41 H 1.09004 * 109.45855 * 301.21643 * 16 15 14 42 42 H 1.08999 * 109.44829 * 181.25477 * 16 15 14 43 43 H 1.09003 * 109.47150 * 59.84136 * 18 17 16 44 44 H 1.09001 * 109.46655 * 179.83493 * 18 17 16 45 45 H 0.96704 * 113.99556 * 180.02562 * 19 18 17 46 46 H 0.97005 * 119.99563 * 240.14273 * 20 17 16 47 47 H 0.97000 * 119.99831 * 179.97438 * 24 23 21 48 48 H 1.08998 * 109.58739 * 246.15647 * 29 13 11 49 49 H 1.08993 * 109.58832 * 6.57977 * 29 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6413 0.0571 2.4765 6 6 2.3102 1.0893 3.0250 7 7 1.6243 1.5037 4.1005 8 6 0.5601 0.7624 4.2442 9 7 0.5327 -0.1529 3.2516 10 1 -0.1460 -0.8320 3.1133 11 6 2.0323 -0.7105 -1.2304 12 8 2.3524 -1.8786 -1.1680 13 7 2.1260 -0.0477 -2.4002 14 6 1.8407 1.3919 -2.4700 15 6 0.7946 1.6398 -3.5552 16 6 1.2760 1.0295 -4.8735 17 6 1.4504 -0.4815 -4.7045 18 6 1.9000 -1.0953 -6.0320 19 8 0.9119 -0.8423 -7.0327 20 7 0.1765 -1.0787 -4.2963 21 6 -0.9234 -0.9643 -5.1040 22 1 -0.8518 -0.4333 -6.0417 23 6 -2.1306 -1.5297 -4.7169 24 7 -2.2179 -2.1763 -3.5738 25 14 -3.6308 -1.3741 -5.8190 26 1 -3.2717 -0.6065 -7.0385 27 1 -4.1027 -2.7277 -6.2067 28 1 -4.7107 -0.6640 -5.0877 29 6 2.5094 -0.7524 -3.6312 30 1 -0.3633 0.5980 0.8357 31 1 -0.3634 -1.0228 0.0999 32 1 -0.3633 0.4249 -0.9358 33 1 1.6054 -1.7198 1.2952 34 1 3.1263 -0.7995 1.2057 35 1 3.2355 1.5110 2.6611 36 1 -0.1769 0.8640 5.0272 37 1 1.4570 1.7353 -1.5093 38 1 2.7538 1.9339 -2.7158 39 1 0.6483 2.7124 -3.6828 40 1 -0.1475 1.1763 -3.2623 41 1 2.2301 1.4761 -5.1535 42 1 0.5407 1.2251 -5.6540 43 1 2.8474 -0.6498 -6.3358 44 1 2.0269 -2.1710 -5.9103 45 1 1.1311 -1.2042 -7.9023 46 1 0.1121 -1.5553 -3.4539 47 1 -3.0616 -2.5711 -3.3032 48 1 3.4782 -0.3889 -3.9738 49 1 2.5667 -1.8233 -3.4365 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733823938.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:57:40 Heat of formation + Delta-G solvation = -37.573927 kcal Electronic energy + Delta-G solvation = -31092.445877 eV Core-core repulsion = 27054.769999 eV Total energy + Delta-G solvation = -4037.675878 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.94995 -41.46638 -39.44856 -37.14023 -36.09575 -35.48591 -33.71688 -33.21546 -32.69145 -31.11194 -30.37619 -27.40222 -26.91910 -26.60572 -25.58413 -23.84909 -23.04434 -22.40165 -21.59387 -20.35485 -19.45683 -19.14639 -18.90687 -17.97931 -17.89694 -16.99077 -16.57975 -16.29369 -15.90977 -15.81233 -15.55272 -15.38860 -15.09667 -14.88554 -14.77687 -14.63040 -14.38333 -14.13358 -13.90402 -13.50573 -13.45695 -13.44366 -13.41433 -13.03256 -12.87612 -12.73430 -12.59512 -12.31739 -12.17167 -11.93189 -11.73894 -11.67169 -11.48631 -11.30117 -10.91944 -10.89214 -10.80403 -10.58259 -10.53202 -9.50719 -9.25893 -8.85365 -7.77643 -5.01835 1.14411 1.45265 1.47324 1.56408 1.63973 2.07402 2.27061 2.36676 2.64874 3.43000 3.45833 3.70014 3.78347 3.80942 3.93293 3.96281 4.02015 4.15919 4.21714 4.28778 4.31679 4.41321 4.42642 4.53188 4.59178 4.64472 4.66199 4.70231 4.73371 4.74204 4.82461 4.83646 4.91481 5.00916 5.06348 5.08176 5.22188 5.34387 5.40777 5.59205 5.61609 5.71991 5.83965 5.93433 6.44560 6.50756 6.57917 7.14325 7.17587 7.23532 7.51773 8.23063 8.46665 9.46523 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.013618 B = 0.003607 C = 0.003151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2055.592055 B = 7760.126842 C = 8882.747467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.090 4.090 3 H 0.121 0.879 4 C -0.017 4.017 5 C -0.015 4.015 6 C -0.039 4.039 7 N -0.534 5.534 8 C 0.187 3.813 9 N -0.561 5.561 10 H 0.430 0.570 11 C 0.517 3.483 12 O -0.586 6.586 13 N -0.596 5.596 14 C 0.109 3.891 15 C -0.126 4.126 16 C -0.109 4.109 17 C 0.176 3.824 18 C 0.075 3.925 19 O -0.566 6.566 20 N -0.714 5.714 21 C -0.175 4.175 22 H 0.093 0.907 23 C -0.092 4.092 24 N -0.978 5.978 25 Si 0.954 3.046 26 H -0.269 1.269 27 H -0.307 1.307 28 H -0.303 1.303 29 C 0.119 3.881 30 H 0.077 0.923 31 H 0.040 0.960 32 H 0.048 0.952 33 H 0.066 0.934 34 H 0.095 0.905 35 H 0.178 0.822 36 H 0.240 0.760 37 H 0.096 0.904 38 H 0.100 0.900 39 H 0.086 0.914 40 H 0.039 0.961 41 H 0.079 0.921 42 H 0.045 0.955 43 H 0.068 0.932 44 H 0.022 0.978 45 H 0.376 0.624 46 H 0.365 0.635 47 H 0.239 0.761 48 H 0.104 0.896 49 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.570 9.273 7.685 16.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.112 4.112 3 H 0.138 0.862 4 C -0.056 4.056 5 C -0.131 4.131 6 C -0.186 4.186 7 N -0.253 5.253 8 C -0.097 4.097 9 N -0.165 5.165 10 H 0.269 0.731 11 C 0.306 3.694 12 O -0.466 6.466 13 N -0.327 5.327 14 C -0.013 4.013 15 C -0.164 4.164 16 C -0.148 4.148 17 C 0.085 3.915 18 C -0.005 4.005 19 O -0.372 6.372 20 N -0.352 5.352 21 C -0.308 4.308 22 H 0.111 0.889 23 C -0.282 4.282 24 N -0.633 5.633 25 Si 0.787 3.213 26 H -0.194 1.194 27 H -0.235 1.235 28 H -0.232 1.232 29 C -0.004 4.004 30 H 0.096 0.904 31 H 0.059 0.941 32 H 0.067 0.933 33 H 0.085 0.915 34 H 0.113 0.887 35 H 0.195 0.805 36 H 0.256 0.744 37 H 0.114 0.886 38 H 0.118 0.882 39 H 0.104 0.896 40 H 0.058 0.942 41 H 0.097 0.903 42 H 0.064 0.936 43 H 0.086 0.914 44 H 0.040 0.960 45 H 0.223 0.777 46 H 0.196 0.804 47 H 0.048 0.952 48 H 0.122 0.878 49 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 11.620 9.724 8.557 17.401 hybrid contribution -1.809 -2.055 -1.496 3.119 sum 9.812 7.669 7.061 14.316 Atomic orbital electron populations 1.21588 0.92772 1.01723 1.02405 1.21267 0.97234 1.01514 0.91145 0.86162 1.19730 1.02098 0.96790 0.87028 1.21090 0.91587 1.02505 0.97956 1.22341 1.02569 0.98077 0.95659 1.70270 1.07034 1.28287 1.19739 1.25634 0.99584 0.89127 0.95308 1.43404 1.21114 1.29160 1.22778 0.73062 1.21024 0.76409 0.86496 0.85474 1.90655 1.51575 1.18427 1.85979 1.47976 1.67154 1.10490 1.07120 1.21939 0.99684 0.79064 1.00596 1.21680 0.98630 1.00798 0.95326 1.21740 1.00844 0.95011 0.97222 1.20368 0.86223 0.93545 0.91327 1.22633 0.90589 0.97746 0.89539 1.86728 1.47466 1.80888 1.22110 1.42549 1.05942 1.64118 1.22581 1.19832 0.87482 1.23820 0.99639 0.88918 1.25334 1.00393 1.03573 0.98912 1.69851 1.24689 1.44680 1.24079 0.85295 0.80986 0.76156 0.78836 1.19391 1.23523 1.23176 1.21626 0.97307 0.97641 0.83855 0.90379 0.94069 0.93290 0.91499 0.88676 0.80478 0.74372 0.88569 0.88206 0.89570 0.94164 0.90282 0.93609 0.91440 0.95955 0.77684 0.80382 0.95248 0.87831 0.91899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.56 8.71 71.98 0.63 -2.94 16 2 C -0.09 -2.23 1.86 -11.54 -0.02 -2.25 16 3 H 0.12 2.33 6.38 -2.39 -0.02 2.32 16 4 C -0.02 -0.39 4.67 29.85 0.14 -0.26 16 5 C -0.02 -0.31 5.61 40.95 0.23 -0.08 16 6 C -0.04 -0.86 11.79 83.52 0.98 0.13 16 7 N -0.53 -12.54 11.25 -200.31 -2.25 -14.79 16 8 C 0.19 3.22 13.04 180.26 2.35 5.57 16 9 N -0.56 -9.59 5.97 -186.49 -1.11 -10.71 16 10 H 0.43 5.66 8.96 -92.70 -0.83 4.83 16 11 C 0.52 16.72 6.82 87.66 0.60 17.32 16 12 O -0.59 -23.70 15.60 -3.04 -0.05 -23.75 16 13 N -0.60 -17.58 2.87 -819.75 -2.36 -19.94 16 14 C 0.11 2.49 6.06 86.22 0.52 3.01 16 15 C -0.13 -3.65 5.91 30.53 0.18 -3.47 16 16 C -0.11 -3.39 4.39 30.62 0.13 -3.25 16 17 C 0.18 6.28 0.68 3.68 0.00 6.28 16 18 C 0.08 2.44 6.08 71.98 0.44 2.88 16 19 O -0.57 -19.92 9.96 -148.98 -1.48 -21.41 16 20 N -0.71 -34.31 4.22 -303.00 -1.28 -35.58 16 21 C -0.18 -9.43 8.29 84.03 0.70 -8.74 16 22 H 0.09 4.96 5.31 -2.91 -0.02 4.95 16 23 C -0.09 -5.35 5.50 84.86 0.47 -4.89 16 24 N -0.98 -60.99 13.06 21.65 0.28 -60.71 16 25 Si 0.95 47.94 29.55 68.60 2.03 49.97 16 26 H -0.27 -12.79 7.11 99.48 0.71 -12.08 16 27 H -0.31 -15.74 7.11 99.48 0.71 -15.04 16 28 H -0.30 -15.36 7.11 99.48 0.71 -14.65 16 29 C 0.12 3.73 5.13 86.36 0.44 4.18 16 30 H 0.08 1.83 7.40 -2.39 -0.02 1.81 16 31 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.05 1.61 7.76 -2.38 -0.02 1.59 16 33 H 0.07 1.73 8.04 -2.39 -0.02 1.71 16 34 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 35 H 0.18 3.24 8.06 -2.91 -0.02 3.22 16 36 H 0.24 2.05 8.06 -2.91 -0.02 2.03 16 37 H 0.10 1.91 5.18 -2.39 -0.01 1.90 16 38 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 39 H 0.09 2.03 8.14 -2.39 -0.02 2.02 16 40 H 0.04 1.57 7.53 -2.38 -0.02 1.55 16 41 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 42 H 0.05 1.70 6.84 -2.39 -0.02 1.69 16 43 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 44 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 45 H 0.38 9.46 9.12 -74.05 -0.68 8.79 16 46 H 0.36 20.08 7.65 -92.70 -0.71 19.37 16 47 H 0.24 14.72 8.31 -92.71 -0.77 13.95 16 48 H 0.10 2.45 8.14 -2.39 -0.02 2.43 16 49 H 0.06 2.37 7.04 -2.39 -0.02 2.35 16 Total: -1.00 -79.83 385.12 0.35 -79.48 By element: Atomic # 1 Polarization: 45.17 SS G_CDS: -1.22 Total: 43.95 kcal Atomic # 6 Polarization: 5.70 SS G_CDS: 7.79 Total: 13.50 kcal Atomic # 7 Polarization: -135.02 SS G_CDS: -6.72 Total: -141.74 kcal Atomic # 8 Polarization: -43.63 SS G_CDS: -1.53 Total: -45.16 kcal Atomic # 14 Polarization: 47.94 SS G_CDS: 2.03 Total: 49.97 kcal Total: -79.83 0.35 -79.48 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733823938.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.904 kcal (2) G-P(sol) polarization free energy of solvation -79.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds