Wall clock time and date at job start Tue Mar 31 2020 19:36:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.47098 * 2 1 4 4 C 1.50698 * 109.47276 * 239.99156 * 2 1 3 5 5 O 1.21276 * 120.00292 * 246.04916 * 4 2 1 6 6 N 1.34782 * 119.99324 * 65.77142 * 4 2 1 7 7 C 1.46505 * 119.99398 * 174.51459 * 6 4 2 8 8 C 1.53006 * 109.54193 * 63.18498 * 7 6 4 9 9 N 1.46495 * 109.47235 * 54.69694 * 8 7 6 10 10 C 1.36934 * 119.99938 * 184.94804 * 9 8 7 11 11 H 1.08007 * 119.99987 * 5.00225 * 10 9 8 12 12 C 1.38816 * 120.00397 * 184.99763 * 10 9 8 13 13 N 1.31621 * 120.00173 * 184.83860 * 12 10 9 14 14 Si 1.86796 * 119.99490 * 4.82964 * 12 10 9 15 15 H 1.48498 * 109.47116 * 94.57180 * 14 12 10 16 16 H 1.48499 * 109.47126 * 214.56933 * 14 12 10 17 17 H 1.48494 * 109.47646 * 334.57080 * 14 12 10 18 18 C 1.53170 * 109.54673 * 303.00206 * 7 6 4 19 19 C 1.53278 * 109.06380 * 297.02910 * 18 7 6 20 20 O 1.42900 * 109.46250 * 302.44455 * 19 18 7 21 21 C 1.42909 * 114.09700 * 61.16023 * 20 19 18 22 22 C 1.53097 * 109.41045 * 298.84330 * 21 20 19 23 23 C 1.50700 * 109.46860 * 119.99640 * 2 1 3 24 24 C 1.39871 * 126.04408 * 64.08455 * 23 2 1 25 25 N 1.30837 * 108.20673 * 179.97438 * 24 23 2 26 26 N 1.40082 * 108.20185 * 0.02562 * 25 24 23 27 27 C 1.46499 * 126.03337 * 180.02562 * 26 25 24 28 28 C 1.34947 * 107.93041 * 359.75230 * 26 25 24 29 29 H 1.09004 * 109.47167 * 300.00321 * 1 2 3 30 30 H 1.08998 * 109.47340 * 60.00318 * 1 2 3 31 31 H 1.09004 * 109.47606 * 180.02562 * 1 2 3 32 32 H 0.96996 * 120.00030 * 354.52379 * 6 4 2 33 33 H 1.08999 * 109.46992 * 174.70733 * 8 7 6 34 34 H 1.09007 * 109.46311 * 294.70128 * 8 7 6 35 35 H 0.96998 * 120.00027 * 4.95788 * 9 8 7 36 36 H 0.96996 * 119.99347 * 180.02562 * 13 12 10 37 37 H 1.08997 * 109.52449 * 57.01816 * 18 7 6 38 38 H 1.08999 * 109.52252 * 177.20783 * 18 7 6 39 39 H 1.09004 * 109.45964 * 182.44782 * 19 18 7 40 40 H 1.09004 * 109.46765 * 62.45034 * 19 18 7 41 41 H 1.08993 * 109.47905 * 178.86085 * 21 20 19 42 42 H 1.08998 * 109.49067 * 58.82712 * 21 20 19 43 43 H 1.09001 * 109.51686 * 297.69794 * 22 21 20 44 44 H 1.08994 * 109.57054 * 177.54721 * 22 21 20 45 45 H 1.08005 * 125.89239 * 359.97438 * 24 23 2 46 46 H 1.09000 * 109.47509 * 89.97099 * 27 26 25 47 47 H 1.09006 * 109.47266 * 209.97352 * 27 26 25 48 48 H 1.09000 * 109.47581 * 329.96745 * 27 26 25 49 49 H 1.07991 * 126.12895 * 180.24338 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7106 -1.2303 5 8 2.6365 -1.7566 -1.1223 6 7 1.8053 -0.1863 -2.4511 7 6 2.3952 -0.8111 -3.6377 8 6 1.8369 -2.2262 -3.8021 9 7 0.3732 -2.1734 -3.8304 10 6 -0.3531 -3.3337 -3.8685 11 1 0.1485 -4.2874 -3.7961 12 6 -1.7341 -3.2841 -4.0000 13 7 -2.4411 -4.3928 -3.9411 14 14 -2.5891 -1.6438 -4.2605 15 1 -2.7884 -1.4148 -5.7141 16 1 -3.9072 -1.6586 -3.5766 17 1 -1.7518 -0.5542 -3.6980 18 6 3.9173 -0.8759 -3.4797 19 6 4.4730 0.5502 -3.3951 20 8 4.0944 1.2788 -4.5646 21 6 2.6821 1.4107 -4.7382 22 6 2.0546 0.0212 -4.8777 23 6 2.0323 -0.7103 1.2305 24 6 1.8405 -2.0616 1.5367 25 7 2.4213 -2.3074 2.6830 26 7 3.0012 -1.1184 3.1436 27 6 3.7507 -0.9520 4.3913 28 6 2.7529 -0.1547 2.2321 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.2516 0.6046 -2.5439 33 1 2.2033 -2.6552 -4.7347 34 1 2.1621 -2.8444 -2.9652 35 1 -0.0815 -1.3167 -3.8224 36 1 -3.4060 -4.3581 -4.0333 37 1 4.1662 -1.4206 -2.5690 38 1 4.3515 -1.3851 -4.3400 39 1 5.5602 0.5128 -3.3262 40 1 4.0697 1.0454 -2.5118 41 1 2.4791 1.9931 -5.6369 42 1 2.2550 1.9171 -3.8726 43 1 2.4513 -0.4699 -5.7663 44 1 0.9725 0.1164 -4.9666 45 1 1.3055 -2.7783 0.9312 46 1 4.8078 -1.1456 4.2088 47 1 3.6259 0.0673 4.7570 48 1 3.3762 -1.6537 5.1366 49 1 3.0703 0.8757 2.2924 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733832686.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:36:20 Heat of formation + Delta-G solvation = 17.546880 kcal Electronic energy + Delta-G solvation = -31235.657178 eV Core-core repulsion = 27200.371518 eV Total energy + Delta-G solvation = -4035.285661 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.28449 -40.45771 -38.41429 -35.94250 -34.30711 -33.71123 -32.71849 -31.39577 -31.12269 -30.69717 -29.30504 -26.86908 -26.52963 -24.36247 -23.74108 -23.23882 -21.47941 -21.22388 -21.01213 -19.69026 -19.03278 -17.71837 -17.28457 -16.45507 -16.10404 -15.98383 -15.47308 -15.40040 -14.90934 -14.52599 -14.48127 -14.39251 -13.92458 -13.87383 -13.56546 -13.18492 -12.94821 -12.89994 -12.75965 -12.64591 -12.51834 -12.40552 -12.15903 -11.83001 -11.77596 -11.59707 -11.43709 -11.23744 -11.11586 -10.89914 -10.56427 -10.40857 -10.33412 -10.11341 -9.62042 -9.54009 -9.36633 -9.15655 -8.78159 -8.59633 -8.32495 -7.12215 -5.71303 -3.04707 1.91659 2.54576 2.88630 3.02422 3.30159 3.37631 3.44053 3.52540 3.87789 4.43688 4.60746 4.66916 4.73605 4.88564 4.91610 4.94953 4.98989 5.00978 5.06172 5.17413 5.18659 5.25871 5.30652 5.38690 5.50619 5.59050 5.64148 5.66369 5.76104 5.77423 5.81518 5.95015 5.95760 5.99936 6.10673 6.15296 6.21211 6.32893 6.37236 6.49917 6.78557 6.85646 7.00984 7.02711 7.18315 7.80101 7.83816 8.08525 8.47679 8.62606 9.28373 9.99943 10.21525 11.47722 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.009078 B = 0.004860 C = 0.003606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3083.680647 B = 5759.895036 C = 7763.786827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.028 4.028 3 H 0.092 0.908 4 C 0.526 3.474 5 O -0.517 6.517 6 N -0.719 5.719 7 C 0.172 3.828 8 C 0.149 3.851 9 N -0.748 5.748 10 C -0.232 4.232 11 H 0.088 0.912 12 C 0.002 3.998 13 N -0.935 5.935 14 Si 0.886 3.114 15 H -0.287 1.287 16 H -0.293 1.293 17 H -0.281 1.281 18 C -0.163 4.163 19 C 0.067 3.933 20 O -0.385 6.385 21 C 0.062 3.938 22 C -0.157 4.157 23 C -0.213 4.213 24 C 0.092 3.908 25 N -0.304 5.304 26 N -0.384 5.384 27 C 0.106 3.894 28 C 0.052 3.948 29 H 0.063 0.937 30 H 0.059 0.941 31 H 0.069 0.931 32 H 0.392 0.608 33 H 0.025 0.975 34 H 0.056 0.944 35 H 0.359 0.641 36 H 0.258 0.742 37 H 0.097 0.903 38 H 0.078 0.922 39 H 0.089 0.911 40 H 0.047 0.953 41 H 0.093 0.907 42 H 0.046 0.954 43 H 0.089 0.911 44 H 0.082 0.918 45 H 0.184 0.816 46 H 0.071 0.929 47 H 0.083 0.917 48 H 0.086 0.914 49 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.927 17.148 10.317 23.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.051 4.051 3 H 0.110 0.890 4 C 0.311 3.689 5 O -0.392 6.392 6 N -0.372 5.372 7 C 0.086 3.914 8 C 0.021 3.979 9 N -0.394 5.394 10 C -0.362 4.362 11 H 0.105 0.895 12 C -0.193 4.193 13 N -0.584 5.584 14 Si 0.718 3.282 15 H -0.214 1.214 16 H -0.219 1.219 17 H -0.208 1.208 18 C -0.202 4.202 19 C -0.010 4.010 20 O -0.304 6.304 21 C -0.015 4.015 22 C -0.195 4.195 23 C -0.225 4.225 24 C -0.094 4.094 25 N -0.125 5.125 26 N -0.166 5.166 27 C -0.036 4.036 28 C -0.094 4.094 29 H 0.082 0.918 30 H 0.078 0.922 31 H 0.088 0.912 32 H 0.226 0.774 33 H 0.043 0.957 34 H 0.074 0.926 35 H 0.192 0.808 36 H 0.068 0.932 37 H 0.115 0.885 38 H 0.097 0.903 39 H 0.107 0.893 40 H 0.065 0.935 41 H 0.111 0.889 42 H 0.065 0.935 43 H 0.108 0.892 44 H 0.100 0.900 45 H 0.201 0.799 46 H 0.089 0.911 47 H 0.101 0.899 48 H 0.105 0.895 49 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 13.825 15.341 11.304 23.543 hybrid contribution -1.482 1.984 -0.685 2.569 sum 12.342 17.325 10.620 23.775 Atomic orbital electron populations 1.21757 0.92216 1.03825 1.01952 1.19501 0.97170 0.98596 0.89830 0.89032 1.20332 0.79339 0.85224 0.83989 1.90648 1.40652 1.21564 1.86305 1.45980 1.53159 1.32009 1.06027 1.20595 0.92328 0.94601 0.83865 1.21050 0.85050 0.92316 0.99510 1.42612 1.00662 1.05199 1.90965 1.19063 0.89432 0.86476 1.41262 0.89450 1.24662 0.96016 0.96105 1.02553 1.69713 1.05704 1.25433 1.57542 0.86525 0.79126 0.84765 0.77826 1.21398 1.21929 1.20814 1.22556 0.94848 0.97869 1.04910 1.22537 0.99653 0.91319 0.87468 1.87902 1.22395 1.74983 1.45082 1.22578 0.81498 0.96156 1.01250 1.22459 1.02336 0.96253 0.98450 1.19463 1.09552 0.94927 0.98516 1.23788 0.97119 0.95810 0.92720 1.77417 1.16209 1.04375 1.14478 1.48377 1.43404 1.06943 1.17892 1.21761 0.95609 1.03127 0.83122 1.22146 1.00568 0.95440 0.91201 0.91830 0.92160 0.91152 0.77364 0.95703 0.92591 0.80790 0.93231 0.88478 0.90319 0.89324 0.93517 0.88897 0.93530 0.89242 0.89982 0.79935 0.91087 0.89858 0.89493 0.81397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.71 9.08 37.16 0.34 -1.37 16 2 C -0.03 -0.34 3.08 -92.93 -0.29 -0.63 16 3 H 0.09 0.82 8.11 -51.93 -0.42 0.40 16 4 C 0.53 7.88 6.45 -10.98 -0.07 7.81 16 5 O -0.52 -9.59 11.40 5.56 0.06 -9.53 16 6 N -0.72 -9.88 3.65 -47.44 -0.17 -10.06 16 7 C 0.17 2.58 0.32 -131.64 -0.04 2.54 16 8 C 0.15 2.97 4.92 -4.04 -0.02 2.95 16 9 N -0.75 -17.38 4.99 -59.90 -0.30 -17.68 16 10 C -0.23 -6.61 10.47 -15.06 -0.16 -6.77 16 11 H 0.09 2.74 8.06 -52.48 -0.42 2.31 16 12 C 0.00 0.05 5.50 -17.43 -0.10 -0.04 16 13 N -0.94 -29.63 13.97 55.49 0.78 -28.85 16 14 Si 0.89 21.76 28.01 -169.99 -4.76 17.00 16 15 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 16 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 17 H -0.28 -6.19 6.15 56.52 0.35 -5.85 16 18 C -0.16 -2.25 4.74 -26.50 -0.13 -2.37 16 19 C 0.07 0.79 6.68 37.30 0.25 1.04 16 20 O -0.38 -4.87 10.77 -35.23 -0.38 -5.24 16 21 C 0.06 0.69 6.67 37.21 0.25 0.93 16 22 C -0.16 -2.09 4.79 -26.59 -0.13 -2.22 16 23 C -0.21 -2.84 4.49 -105.05 -0.47 -3.31 16 24 C 0.09 1.47 10.55 -17.36 -0.18 1.29 16 25 N -0.30 -4.81 12.58 30.63 0.39 -4.42 16 26 N -0.38 -4.63 4.01 -68.16 -0.27 -4.90 16 27 C 0.11 0.75 11.47 59.85 0.69 1.44 16 28 C 0.05 0.58 11.38 -17.22 -0.20 0.38 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.06 0.69 7.82 -51.93 -0.41 0.29 16 31 H 0.07 1.06 8.10 -51.93 -0.42 0.64 16 32 H 0.39 4.55 7.31 -40.82 -0.30 4.25 16 33 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.06 1.27 6.38 -51.93 -0.33 0.94 16 35 H 0.36 7.93 4.23 -40.82 -0.17 7.75 16 36 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 37 H 0.10 1.51 6.09 -51.93 -0.32 1.19 16 38 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 39 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.05 0.53 7.75 -51.93 -0.40 0.12 16 41 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.05 0.45 7.16 -51.93 -0.37 0.08 16 43 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 44 H 0.08 1.16 7.20 -51.93 -0.37 0.79 16 45 H 0.18 3.14 8.03 -52.48 -0.42 2.72 16 46 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 47 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 48 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 49 H 0.17 1.17 8.06 -52.49 -0.42 0.75 16 LS Contribution 386.20 15.07 5.82 5.82 Total: -1.00 -36.25 386.20 -6.87 -43.12 By element: Atomic # 1 Polarization: 20.86 SS G_CDS: -7.78 Total: 13.08 kcal Atomic # 6 Polarization: 1.92 SS G_CDS: -0.25 Total: 1.67 kcal Atomic # 7 Polarization: -66.33 SS G_CDS: 0.41 Total: -65.91 kcal Atomic # 8 Polarization: -14.46 SS G_CDS: -0.32 Total: -14.77 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -4.76 Total: 17.00 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -36.25 -6.87 -43.12 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733832686.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.666 kcal (2) G-P(sol) polarization free energy of solvation -36.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.119 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds