Wall clock time and date at job start Tue Mar 31 2020 19:36:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.47098 * 2 1 4 4 C 1.50698 * 109.47276 * 239.99156 * 2 1 3 5 5 O 1.21276 * 120.00292 * 246.04916 * 4 2 1 6 6 N 1.34782 * 119.99324 * 65.77142 * 4 2 1 7 7 C 1.46505 * 119.99398 * 174.51459 * 6 4 2 8 8 C 1.53006 * 109.54193 * 63.18498 * 7 6 4 9 9 N 1.46495 * 109.47235 * 54.69694 * 8 7 6 10 10 C 1.36934 * 119.99938 * 184.94804 * 9 8 7 11 11 H 1.08007 * 119.99987 * 5.00225 * 10 9 8 12 12 C 1.38816 * 120.00397 * 184.99763 * 10 9 8 13 13 N 1.31621 * 120.00173 * 184.83860 * 12 10 9 14 14 Si 1.86796 * 119.99490 * 4.82964 * 12 10 9 15 15 H 1.48498 * 109.47116 * 94.57180 * 14 12 10 16 16 H 1.48499 * 109.47126 * 214.56933 * 14 12 10 17 17 H 1.48494 * 109.47646 * 334.57080 * 14 12 10 18 18 C 1.53170 * 109.54673 * 303.00206 * 7 6 4 19 19 C 1.53278 * 109.06380 * 297.02910 * 18 7 6 20 20 O 1.42900 * 109.46250 * 302.44455 * 19 18 7 21 21 C 1.42909 * 114.09700 * 61.16023 * 20 19 18 22 22 C 1.53097 * 109.41045 * 298.84330 * 21 20 19 23 23 C 1.50700 * 109.46860 * 119.99640 * 2 1 3 24 24 C 1.39871 * 126.04408 * 64.08455 * 23 2 1 25 25 N 1.30837 * 108.20673 * 179.97438 * 24 23 2 26 26 N 1.40082 * 108.20185 * 0.02562 * 25 24 23 27 27 C 1.46499 * 126.03337 * 180.02562 * 26 25 24 28 28 C 1.34947 * 107.93041 * 359.75230 * 26 25 24 29 29 H 1.09004 * 109.47167 * 300.00321 * 1 2 3 30 30 H 1.08998 * 109.47340 * 60.00318 * 1 2 3 31 31 H 1.09004 * 109.47606 * 180.02562 * 1 2 3 32 32 H 0.96996 * 120.00030 * 354.52379 * 6 4 2 33 33 H 1.08999 * 109.46992 * 174.70733 * 8 7 6 34 34 H 1.09007 * 109.46311 * 294.70128 * 8 7 6 35 35 H 0.96998 * 120.00027 * 4.95788 * 9 8 7 36 36 H 0.96996 * 119.99347 * 180.02562 * 13 12 10 37 37 H 1.08997 * 109.52449 * 57.01816 * 18 7 6 38 38 H 1.08999 * 109.52252 * 177.20783 * 18 7 6 39 39 H 1.09004 * 109.45964 * 182.44782 * 19 18 7 40 40 H 1.09004 * 109.46765 * 62.45034 * 19 18 7 41 41 H 1.08993 * 109.47905 * 178.86085 * 21 20 19 42 42 H 1.08998 * 109.49067 * 58.82712 * 21 20 19 43 43 H 1.09001 * 109.51686 * 297.69794 * 22 21 20 44 44 H 1.08994 * 109.57054 * 177.54721 * 22 21 20 45 45 H 1.08005 * 125.89239 * 359.97438 * 24 23 2 46 46 H 1.09000 * 109.47509 * 89.97099 * 27 26 25 47 47 H 1.09006 * 109.47266 * 209.97352 * 27 26 25 48 48 H 1.09000 * 109.47581 * 329.96745 * 27 26 25 49 49 H 1.07991 * 126.12895 * 180.24338 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7106 -1.2303 5 8 2.6365 -1.7566 -1.1223 6 7 1.8053 -0.1863 -2.4511 7 6 2.3952 -0.8111 -3.6377 8 6 1.8369 -2.2262 -3.8021 9 7 0.3732 -2.1734 -3.8304 10 6 -0.3531 -3.3337 -3.8685 11 1 0.1485 -4.2874 -3.7961 12 6 -1.7341 -3.2841 -4.0000 13 7 -2.4411 -4.3928 -3.9411 14 14 -2.5891 -1.6438 -4.2605 15 1 -2.7884 -1.4148 -5.7141 16 1 -3.9072 -1.6586 -3.5766 17 1 -1.7518 -0.5542 -3.6980 18 6 3.9173 -0.8759 -3.4797 19 6 4.4730 0.5502 -3.3951 20 8 4.0944 1.2788 -4.5646 21 6 2.6821 1.4107 -4.7382 22 6 2.0546 0.0212 -4.8777 23 6 2.0323 -0.7103 1.2305 24 6 1.8405 -2.0616 1.5367 25 7 2.4213 -2.3074 2.6830 26 7 3.0012 -1.1184 3.1436 27 6 3.7507 -0.9520 4.3913 28 6 2.7529 -0.1547 2.2321 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.2516 0.6046 -2.5439 33 1 2.2033 -2.6552 -4.7347 34 1 2.1621 -2.8444 -2.9652 35 1 -0.0815 -1.3167 -3.8224 36 1 -3.4060 -4.3581 -4.0333 37 1 4.1662 -1.4206 -2.5690 38 1 4.3515 -1.3851 -4.3400 39 1 5.5602 0.5128 -3.3262 40 1 4.0697 1.0454 -2.5118 41 1 2.4791 1.9931 -5.6369 42 1 2.2550 1.9171 -3.8726 43 1 2.4513 -0.4699 -5.7663 44 1 0.9725 0.1164 -4.9666 45 1 1.3055 -2.7783 0.9312 46 1 4.8078 -1.1456 4.2088 47 1 3.6259 0.0673 4.7570 48 1 3.3762 -1.6537 5.1366 49 1 3.0703 0.8757 2.2924 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733832686.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:36:19 Heat of formation + Delta-G solvation = -10.145651 kcal Electronic energy + Delta-G solvation = -31236.858016 eV Core-core repulsion = 27200.371518 eV Total energy + Delta-G solvation = -4036.486499 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.28691 -41.57804 -39.47721 -37.34787 -35.46524 -35.33060 -33.73679 -33.13039 -32.20259 -32.04371 -30.22067 -28.46713 -27.32934 -25.51337 -25.05852 -24.50545 -23.01896 -22.42578 -21.92806 -20.70642 -20.32678 -19.73668 -18.29013 -17.42310 -17.17127 -16.95288 -16.71455 -16.41995 -16.29680 -16.05255 -15.49953 -15.46932 -15.23123 -14.99347 -14.95740 -14.72439 -14.35641 -13.99351 -13.78238 -13.73429 -13.56364 -13.43314 -13.29079 -13.18562 -12.98952 -12.83106 -12.79646 -12.50046 -12.45165 -12.25691 -12.06542 -11.84258 -11.63240 -11.41343 -11.32622 -11.01677 -10.61123 -10.40023 -10.21294 -9.83293 -9.28650 -9.23079 -8.01255 -5.34320 1.00462 1.31877 1.42707 1.49254 1.75035 1.79539 1.87797 2.42351 2.49409 3.00053 3.29267 3.49559 3.63207 3.70607 3.87606 3.89204 3.98847 4.05217 4.13185 4.25327 4.29345 4.32819 4.40255 4.46523 4.47419 4.52912 4.67356 4.71514 4.76822 4.83060 4.83998 4.86641 4.88069 4.89281 5.01771 5.10608 5.14518 5.15895 5.19484 5.23142 5.39268 5.66903 5.70687 5.77516 6.21166 6.24534 6.29153 6.75633 6.78267 7.09711 7.51538 7.82908 8.09605 9.21313 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.009078 B = 0.004860 C = 0.003606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3083.680647 B = 5759.895036 C = 7763.786827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.017 4.017 3 H 0.140 0.860 4 C 0.518 3.482 5 O -0.561 6.561 6 N -0.710 5.710 7 C 0.181 3.819 8 C 0.149 3.851 9 N -0.739 5.739 10 C -0.232 4.232 11 H 0.037 0.963 12 C -0.067 4.067 13 N -0.989 5.989 14 Si 0.964 3.036 15 H -0.279 1.279 16 H -0.297 1.297 17 H -0.237 1.237 18 C -0.157 4.157 19 C 0.075 3.925 20 O -0.393 6.393 21 C 0.065 3.935 22 C -0.154 4.154 23 C -0.234 4.234 24 C 0.064 3.936 25 N -0.348 5.348 26 N -0.381 5.381 27 C 0.094 3.906 28 C 0.075 3.925 29 H 0.086 0.914 30 H 0.073 0.927 31 H 0.026 0.974 32 H 0.408 0.592 33 H 0.015 0.985 34 H 0.021 0.979 35 H 0.369 0.631 36 H 0.257 0.743 37 H 0.075 0.925 38 H 0.072 0.928 39 H 0.103 0.897 40 H 0.060 0.940 41 H 0.114 0.886 42 H 0.070 0.930 43 H 0.081 0.919 44 H 0.079 0.921 45 H 0.147 0.853 46 H 0.082 0.918 47 H 0.124 0.876 48 H 0.084 0.916 49 H 0.223 0.777 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.806 23.297 11.049 29.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.039 4.039 3 H 0.158 0.842 4 C 0.305 3.695 5 O -0.438 6.438 6 N -0.364 5.364 7 C 0.094 3.906 8 C 0.022 3.978 9 N -0.385 5.385 10 C -0.364 4.364 11 H 0.055 0.945 12 C -0.258 4.258 13 N -0.639 5.639 14 Si 0.790 3.210 15 H -0.206 1.206 16 H -0.224 1.224 17 H -0.161 1.161 18 C -0.197 4.197 19 C -0.001 4.001 20 O -0.312 6.312 21 C -0.011 4.011 22 C -0.192 4.192 23 C -0.246 4.246 24 C -0.121 4.121 25 N -0.170 5.170 26 N -0.163 5.163 27 C -0.045 4.045 28 C -0.072 4.072 29 H 0.105 0.895 30 H 0.091 0.909 31 H 0.046 0.954 32 H 0.245 0.755 33 H 0.033 0.967 34 H 0.039 0.961 35 H 0.204 0.796 36 H 0.066 0.934 37 H 0.094 0.906 38 H 0.091 0.909 39 H 0.121 0.879 40 H 0.079 0.921 41 H 0.132 0.868 42 H 0.088 0.912 43 H 0.099 0.901 44 H 0.098 0.902 45 H 0.165 0.835 46 H 0.100 0.900 47 H 0.142 0.858 48 H 0.102 0.898 49 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges 14.739 21.534 12.042 28.739 hybrid contribution -1.658 -0.119 -0.825 1.856 sum 13.081 21.414 11.216 27.486 Atomic orbital electron populations 1.21748 0.92473 1.01549 1.03718 1.19531 0.96723 1.00281 0.87386 0.84185 1.21046 0.78508 0.84779 0.85135 1.90656 1.42620 1.23596 1.86949 1.45893 1.53076 1.32195 1.05220 1.20367 0.92942 0.91640 0.85646 1.21068 0.83301 0.95998 0.97446 1.42385 1.01717 1.03811 1.90605 1.18931 0.90042 0.86548 1.40830 0.94531 1.25613 0.96632 1.01118 1.02416 1.69939 1.05979 1.28896 1.59123 0.85279 0.77603 0.80057 0.78036 1.20576 1.22385 1.16066 1.22471 0.93900 0.99711 1.03571 1.22518 1.00481 0.89282 0.87857 1.87909 1.23327 1.74668 1.45321 1.22706 0.80583 0.94424 1.03412 1.22445 1.02398 0.97626 0.96736 1.19660 1.11074 0.93758 1.00122 1.23494 0.98251 0.97151 0.93229 1.77301 1.17729 1.07088 1.14895 1.48789 1.42450 1.05961 1.19117 1.22188 0.95544 1.05573 0.81225 1.22882 0.97978 0.97021 0.89308 0.89526 0.90856 0.95424 0.75496 0.96709 0.96099 0.79566 0.93424 0.90639 0.90917 0.87910 0.92146 0.86772 0.91166 0.90058 0.90198 0.83541 0.89985 0.85792 0.89764 0.76083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.07 9.08 71.98 0.65 -2.42 16 2 C -0.02 -0.36 3.08 -12.29 -0.04 -0.40 16 3 H 0.14 1.67 8.11 -2.39 -0.02 1.65 16 4 C 0.52 15.11 6.45 87.66 0.57 15.68 16 5 O -0.56 -21.83 11.40 -3.02 -0.03 -21.87 16 6 N -0.71 -18.01 3.65 -422.38 -1.54 -19.55 16 7 C 0.18 5.28 0.32 3.72 0.00 5.28 16 8 C 0.15 6.26 4.92 86.38 0.43 6.68 16 9 N -0.74 -35.03 4.99 -343.44 -1.71 -36.74 16 10 C -0.23 -13.94 10.47 84.03 0.88 -13.06 16 11 H 0.04 2.50 8.06 -2.91 -0.02 2.48 16 12 C -0.07 -4.04 5.50 84.86 0.47 -3.57 16 13 N -0.99 -65.50 13.97 21.65 0.30 -65.20 16 14 Si 0.96 44.69 28.01 68.60 1.92 46.61 16 15 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 16 H -0.30 -14.01 7.11 99.48 0.71 -13.31 16 17 H -0.24 -9.09 6.15 99.48 0.61 -8.48 16 18 C -0.16 -4.26 4.74 30.74 0.15 -4.11 16 19 C 0.08 1.54 6.68 72.08 0.48 2.03 16 20 O -0.39 -8.42 10.77 -148.98 -1.60 -10.02 16 21 C 0.07 1.15 6.67 72.01 0.48 1.63 16 22 C -0.15 -3.72 4.79 30.68 0.15 -3.57 16 23 C -0.23 -5.96 4.49 -20.14 -0.09 -6.05 16 24 C 0.06 2.18 10.55 85.24 0.90 3.08 16 25 N -0.35 -11.41 12.58 -57.02 -0.72 -12.13 16 26 N -0.38 -8.46 4.01 -369.56 -1.48 -9.94 16 27 C 0.09 1.07 11.47 127.77 1.47 2.53 16 28 C 0.08 1.39 11.38 83.54 0.95 2.34 16 29 H 0.09 1.53 8.14 -2.38 -0.02 1.51 16 30 H 0.07 1.42 7.82 -2.39 -0.02 1.40 16 31 H 0.03 0.84 8.10 -2.38 -0.02 0.82 16 32 H 0.41 7.72 7.31 -92.71 -0.68 7.04 16 33 H 0.02 0.65 8.14 -2.39 -0.02 0.63 16 34 H 0.02 1.03 6.38 -2.38 -0.02 1.02 16 35 H 0.37 15.77 4.23 -92.71 -0.39 15.38 16 36 H 0.26 16.11 8.31 -92.71 -0.77 15.34 16 37 H 0.08 2.41 6.09 -2.39 -0.01 2.40 16 38 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 39 H 0.10 1.84 8.14 -2.38 -0.02 1.82 16 40 H 0.06 1.10 7.75 -2.38 -0.02 1.08 16 41 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16 42 H 0.07 0.95 7.16 -2.39 -0.02 0.93 16 43 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 44 H 0.08 1.98 7.20 -2.39 -0.02 1.97 16 45 H 0.15 5.84 8.03 -2.91 -0.02 5.82 16 46 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 47 H 0.12 0.43 8.14 -2.38 -0.02 0.41 16 48 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 49 H 0.22 1.55 8.06 -2.92 -0.02 1.52 16 Total: -1.00 -88.26 386.20 2.36 -85.90 By element: Atomic # 1 Polarization: 37.08 SS G_CDS: -0.20 Total: 36.88 kcal Atomic # 6 Polarization: -1.37 SS G_CDS: 7.43 Total: 6.06 kcal Atomic # 7 Polarization: -138.41 SS G_CDS: -5.15 Total: -143.57 kcal Atomic # 8 Polarization: -30.25 SS G_CDS: -1.64 Total: -31.89 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 1.92 Total: 46.61 kcal Total: -88.26 2.36 -85.90 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733832686.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.754 kcal (2) G-P(sol) polarization free energy of solvation -88.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds