Wall clock time and date at job start Tue Mar 31 2020 20:11:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.47111 * 2 1 4 4 C 1.52998 * 109.47044 * 239.99953 * 2 1 3 5 5 N 1.46494 * 109.47044 * 185.00294 * 4 2 1 6 6 C 1.34780 * 119.99897 * 180.02562 * 5 4 2 7 7 O 1.21289 * 120.00087 * 0.02562 * 6 5 4 8 8 C 1.50699 * 120.00249 * 180.27263 * 6 5 4 9 9 H 1.09002 * 109.46990 * 299.72659 * 8 6 5 10 10 C 1.52995 * 109.47002 * 59.72262 * 8 6 5 11 11 C 1.52996 * 109.47489 * 179.72326 * 8 6 5 12 12 C 1.52995 * 109.47466 * 174.99930 * 11 8 6 13 13 C 1.50698 * 109.47347 * 180.02562 * 12 11 8 14 14 C 1.38249 * 119.97408 * 269.72793 * 13 12 11 15 15 C 1.38193 * 120.02400 * 179.72522 * 14 13 12 16 16 C 1.38469 * 119.97595 * 0.56862 * 15 14 13 17 17 F 1.35100 * 120.02616 * 179.68131 * 16 15 14 18 18 C 1.38457 * 119.94371 * 359.70611 * 16 15 14 19 19 C 1.38192 * 119.97676 * 359.97438 * 18 16 15 20 20 N 1.46499 * 109.46818 * 120.00313 * 2 1 3 21 21 C 1.46495 * 120.00303 * 60.00017 * 20 2 1 22 22 C 1.36941 * 119.99681 * 239.99632 * 20 2 1 23 23 H 1.07994 * 120.00204 * 23.06894 * 22 20 2 24 24 C 1.38811 * 119.99950 * 203.07564 * 22 20 2 25 25 N 1.31617 * 120.00165 * 11.68352 * 24 22 20 26 26 Si 1.86802 * 120.00018 * 191.69271 * 24 22 20 27 27 H 1.48506 * 109.47331 * 89.99682 * 26 24 22 28 28 H 1.48502 * 109.47376 * 209.99329 * 26 24 22 29 29 H 1.48496 * 109.47333 * 329.99899 * 26 24 22 30 30 H 1.09004 * 109.47163 * 300.00290 * 1 2 3 31 31 H 1.08998 * 109.47009 * 59.99307 * 1 2 3 32 32 H 1.09003 * 109.47589 * 180.02562 * 1 2 3 33 33 H 1.09006 * 109.47061 * 64.99773 * 4 2 1 34 34 H 1.09000 * 109.46977 * 305.00642 * 4 2 1 35 35 H 0.96992 * 120.00506 * 359.97438 * 5 4 2 36 36 H 1.09002 * 109.46924 * 60.00357 * 10 8 6 37 37 H 1.09002 * 109.47460 * 179.97438 * 10 8 6 38 38 H 1.09002 * 109.47382 * 300.00556 * 10 8 6 39 39 H 1.09002 * 109.47215 * 295.00748 * 11 8 6 40 40 H 1.09008 * 109.47080 * 55.00231 * 11 8 6 41 41 H 1.08996 * 109.47459 * 300.00179 * 12 11 8 42 42 H 1.09000 * 109.46837 * 59.99824 * 12 11 8 43 43 H 1.08001 * 119.98765 * 359.97438 * 14 13 12 44 44 H 1.08003 * 120.01658 * 180.25374 * 15 14 13 45 45 H 1.08000 * 120.01009 * 179.97438 * 18 16 15 46 46 H 1.08007 * 119.98700 * 179.97438 * 19 18 16 47 47 H 1.08997 * 109.47472 * 93.95098 * 21 20 2 48 48 H 1.09004 * 109.46819 * 213.94883 * 21 20 2 49 49 H 1.09000 * 109.47208 * 333.94621 * 21 20 2 50 50 H 0.97006 * 120.00268 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5000 -0.8264 -1.1905 6 6 4.1730 -1.4284 -2.1912 7 8 3.5699 -1.8825 -3.1404 8 6 5.6744 -1.5421 -2.1279 9 1 6.1126 -0.5451 -2.0831 10 6 6.0739 -2.3313 -0.8796 11 6 6.1839 -2.2677 -3.3748 12 6 7.7138 -2.2735 -3.3720 13 6 8.2157 -2.9876 -4.6005 14 6 8.4461 -4.3502 -4.5615 15 6 8.9009 -5.0071 -5.6890 16 6 9.1371 -4.2982 -6.8548 17 9 9.5879 -4.9383 -7.9558 18 6 8.9114 -2.9326 -6.8909 19 6 8.4503 -2.2789 -5.7640 20 7 2.0183 -0.6907 1.1961 21 6 1.6644 -2.0932 1.4279 22 6 2.8056 -0.0252 2.0975 23 1 2.7713 1.0528 2.1520 24 6 3.6479 -0.7363 2.9412 25 7 3.8658 -2.0165 2.7274 26 14 4.4719 0.1238 4.3802 27 1 3.5998 0.0296 5.5786 28 1 5.7761 -0.5267 4.6649 29 1 4.6947 1.5523 4.0414 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 1.7516 -0.1583 -2.1370 34 1 1.6052 -1.7198 -1.2952 35 1 3.9824 -0.4623 -0.4320 36 1 5.6356 -3.3283 -0.9244 37 1 7.1598 -2.4139 -0.8340 38 1 5.7108 -1.8144 0.0088 39 1 5.8166 -3.2940 -3.3735 40 1 5.8241 -1.7542 -4.2665 41 1 8.0811 -1.2472 -3.3734 42 1 8.0736 -2.7869 -2.4804 43 1 8.2668 -4.9022 -3.6507 44 1 9.0770 -6.0723 -5.6596 45 1 9.0956 -2.3785 -7.7994 46 1 8.2745 -1.2136 -5.7919 47 1 2.4508 -2.7365 1.0332 48 1 1.5550 -2.2682 2.4983 49 1 0.7239 -2.3186 0.9250 50 1 4.4541 -2.5136 3.3172 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734040046.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:11:40 Heat of formation + Delta-G solvation = -59.466162 kcal Electronic energy + Delta-G solvation = -29010.827395 eV Core-core repulsion = 24952.282236 eV Total energy + Delta-G solvation = -4058.545158 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -49.07597 -39.68811 -39.14307 -36.82023 -35.34808 -33.64720 -32.34226 -31.63394 -31.34982 -29.32917 -28.01021 -26.06164 -25.84567 -24.81498 -23.26768 -23.12231 -22.18058 -20.83441 -19.49666 -18.96924 -17.87077 -16.95023 -16.68721 -16.58844 -15.81578 -15.70633 -15.42060 -15.26370 -14.94506 -14.31982 -14.25608 -13.97101 -13.72337 -13.58653 -13.43765 -13.19686 -12.83727 -12.68000 -12.59539 -12.35094 -12.17208 -11.97420 -11.65919 -11.61051 -11.49398 -11.36189 -11.14621 -11.10311 -10.85148 -10.74392 -10.61421 -10.53491 -10.43069 -10.31049 -9.90151 -9.81214 -9.32835 -9.19331 -8.69819 -8.63084 -8.31008 -6.84271 -5.79680 -3.27756 0.93178 1.01424 3.21300 3.31055 3.35668 3.38534 3.39693 3.87565 4.06074 4.40687 4.48328 4.55780 4.67616 4.94721 5.05763 5.08061 5.16177 5.22906 5.33140 5.37625 5.45188 5.55471 5.60829 5.63468 5.69020 5.74195 5.88645 5.90089 5.95926 6.02576 6.07067 6.08614 6.11051 6.16366 6.20382 6.36413 6.39596 6.40070 6.45265 6.65961 6.68341 6.70824 6.79865 6.89499 7.19196 7.36834 7.69532 7.75341 8.27448 8.31421 8.87581 9.15851 9.78704 10.28936 11.22887 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.015862 B = 0.002345 C = 0.002151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1764.798301 B =11938.874202 C =13013.812797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.158 3.842 3 H 0.067 0.933 4 C 0.108 3.892 5 N -0.699 5.699 6 C 0.513 3.487 7 O -0.566 6.566 8 C -0.108 4.108 9 H 0.091 0.909 10 C -0.144 4.144 11 C -0.091 4.091 12 C -0.085 4.085 13 C -0.083 4.083 14 C -0.088 4.088 15 C -0.151 4.151 16 C 0.086 3.914 17 F -0.144 7.144 18 C -0.152 4.152 19 C -0.089 4.089 20 N -0.593 5.593 21 C 0.164 3.836 22 C -0.260 4.260 23 H 0.067 0.933 24 C 0.007 3.993 25 N -0.900 5.900 26 Si 0.900 3.100 27 H -0.289 1.289 28 H -0.292 1.292 29 H -0.281 1.281 30 H 0.056 0.944 31 H 0.045 0.955 32 H 0.051 0.949 33 H 0.051 0.949 34 H 0.056 0.944 35 H 0.414 0.586 36 H 0.057 0.943 37 H 0.059 0.941 38 H 0.078 0.922 39 H 0.069 0.931 40 H 0.069 0.931 41 H 0.074 0.926 42 H 0.080 0.920 43 H 0.134 0.866 44 H 0.133 0.867 45 H 0.133 0.867 46 H 0.132 0.868 47 H 0.029 0.971 48 H 0.041 0.959 49 H -0.003 1.003 50 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.541 -0.777 -13.281 15.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.049 3.951 3 H 0.086 0.914 4 C -0.019 4.019 5 N -0.350 5.350 6 C 0.298 3.702 7 O -0.446 6.446 8 C -0.130 4.130 9 H 0.109 0.891 10 C -0.202 4.202 11 C -0.128 4.128 12 C -0.122 4.122 13 C -0.083 4.083 14 C -0.106 4.106 15 C -0.170 4.170 16 C 0.067 3.933 17 F -0.123 7.123 18 C -0.171 4.171 19 C -0.107 4.107 20 N -0.316 5.316 21 C 0.019 3.981 22 C -0.389 4.389 23 H 0.084 0.916 24 C -0.192 4.192 25 N -0.544 5.544 26 Si 0.731 3.269 27 H -0.217 1.217 28 H -0.218 1.218 29 H -0.206 1.206 30 H 0.075 0.925 31 H 0.064 0.936 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.074 0.926 35 H 0.251 0.749 36 H 0.077 0.923 37 H 0.078 0.922 38 H 0.097 0.903 39 H 0.088 0.912 40 H 0.088 0.912 41 H 0.093 0.907 42 H 0.098 0.902 43 H 0.152 0.848 44 H 0.151 0.849 45 H 0.151 0.849 46 H 0.150 0.850 47 H 0.047 0.953 48 H 0.060 0.940 49 H 0.016 0.984 50 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 8.223 -1.240 -13.854 16.158 hybrid contribution 0.736 0.320 1.029 1.305 sum 8.959 -0.919 -12.825 15.672 Atomic orbital electron populations 1.22175 0.97607 1.01424 1.00592 1.20643 0.92531 0.95843 0.86060 0.91449 1.21899 0.80453 1.00809 0.98712 1.45860 1.07936 1.58049 1.23108 1.20516 0.89712 0.77622 0.82310 1.90628 1.70564 1.49137 1.34260 1.21275 0.92798 1.01387 0.97504 0.89085 1.21812 1.01103 1.00708 0.96558 1.21344 0.92742 1.01645 0.97115 1.20749 0.96168 1.00438 0.94819 1.20046 0.98358 0.93936 0.95940 1.20988 0.97568 0.93976 0.98047 1.21151 1.02796 1.00810 0.92262 1.17730 1.01003 0.90995 0.83572 1.91486 1.86845 1.82064 1.51881 1.21131 1.02906 0.92786 1.00271 1.20959 0.97744 1.00353 0.91626 1.43925 1.57869 1.09640 1.20191 1.20743 0.93906 0.84513 0.98891 1.19211 1.16009 0.91101 1.12605 0.91558 1.24989 0.97892 0.96139 1.00206 1.70076 1.38999 1.07228 1.38104 0.86331 0.78676 0.78779 0.83139 1.21658 1.21801 1.20609 0.92490 0.93610 0.92978 0.93113 0.92588 0.74876 0.92345 0.92165 0.90335 0.91193 0.91205 0.90688 0.90188 0.84843 0.84862 0.84910 0.84964 0.95278 0.93986 0.98441 0.93769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.59 9.18 37.16 0.34 -2.24 16 2 C 0.16 2.95 2.87 -67.93 -0.19 2.75 16 3 H 0.07 1.25 7.86 -51.93 -0.41 0.84 16 4 C 0.11 1.98 4.97 -4.05 -0.02 1.96 16 5 N -0.70 -12.89 5.28 -60.29 -0.32 -13.20 16 6 C 0.51 9.18 7.16 -10.98 -0.08 9.10 16 7 O -0.57 -11.76 15.92 5.55 0.09 -11.67 16 8 C -0.11 -1.51 2.73 -91.78 -0.25 -1.76 16 9 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 10 C -0.14 -2.08 8.84 37.16 0.33 -1.75 16 11 C -0.09 -1.13 4.01 -26.74 -0.11 -1.24 16 12 C -0.08 -0.82 5.10 -27.89 -0.14 -0.96 16 13 C -0.08 -0.82 5.13 -104.62 -0.54 -1.36 16 14 C -0.09 -0.85 9.70 -39.59 -0.38 -1.23 16 15 C -0.15 -1.48 10.03 -39.51 -0.40 -1.87 16 16 C 0.09 0.91 7.30 -39.42 -0.29 0.62 16 17 F -0.14 -1.61 17.27 2.25 0.04 -1.58 16 18 C -0.15 -1.45 10.03 -39.52 -0.40 -1.85 16 19 C -0.09 -0.83 9.70 -39.60 -0.38 -1.22 16 20 N -0.59 -13.26 2.29 -173.49 -0.40 -13.66 16 21 C 0.16 3.80 8.11 59.84 0.49 4.29 16 22 C -0.26 -6.35 9.32 -15.06 -0.14 -6.49 16 23 H 0.07 1.61 7.82 -52.49 -0.41 1.20 16 24 C 0.01 0.17 5.12 -17.43 -0.09 0.08 16 25 N -0.90 -23.51 10.65 55.49 0.59 -22.92 16 26 Si 0.90 20.22 29.57 -169.99 -5.03 15.20 16 27 H -0.29 -6.69 7.11 56.52 0.40 -6.28 16 28 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 29 H -0.28 -6.19 7.11 56.52 0.40 -5.78 16 30 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.05 0.86 6.66 -51.93 -0.35 0.52 16 33 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.06 1.12 7.84 -51.93 -0.41 0.71 16 35 H 0.41 7.99 7.30 -40.82 -0.30 7.69 16 36 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 37 H 0.06 0.71 6.56 -51.93 -0.34 0.37 16 38 H 0.08 1.36 7.56 -51.93 -0.39 0.96 16 39 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.07 0.93 7.96 -51.92 -0.41 0.52 16 41 H 0.07 0.64 8.08 -51.93 -0.42 0.22 16 42 H 0.08 0.73 6.51 -51.93 -0.34 0.40 16 43 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16 44 H 0.13 1.07 8.06 -52.48 -0.42 0.64 16 45 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 46 H 0.13 1.00 8.06 -52.48 -0.42 0.58 16 47 H 0.03 0.74 7.41 -51.93 -0.38 0.35 16 48 H 0.04 1.06 7.23 -51.93 -0.38 0.68 16 49 H 0.00 -0.06 6.43 -51.93 -0.33 -0.39 16 50 H 0.25 6.53 8.31 -40.82 -0.34 6.19 16 LS Contribution 406.19 15.07 6.12 6.12 Total: -1.00 -28.15 406.19 -9.39 -37.54 By element: Atomic # 1 Polarization: 15.58 SS G_CDS: -8.23 Total: 7.35 kcal Atomic # 6 Polarization: -0.92 SS G_CDS: -2.25 Total: -3.18 kcal Atomic # 7 Polarization: -49.66 SS G_CDS: -0.12 Total: -49.78 kcal Atomic # 8 Polarization: -11.76 SS G_CDS: 0.09 Total: -11.67 kcal Atomic # 9 Polarization: -1.61 SS G_CDS: 0.04 Total: -1.58 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.03 Total: 15.20 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -28.15 -9.39 -37.54 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734040046.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.931 kcal (2) G-P(sol) polarization free energy of solvation -28.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds