Wall clock time and date at job start Tue Mar 31 2020 20:11:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.47111 * 2 1 4 4 C 1.52998 * 109.47044 * 239.99953 * 2 1 3 5 5 N 1.46494 * 109.47044 * 185.00294 * 4 2 1 6 6 C 1.34780 * 119.99897 * 180.02562 * 5 4 2 7 7 O 1.21289 * 120.00087 * 0.02562 * 6 5 4 8 8 C 1.50699 * 120.00249 * 180.27263 * 6 5 4 9 9 H 1.09002 * 109.46990 * 299.72659 * 8 6 5 10 10 C 1.52995 * 109.47002 * 59.72262 * 8 6 5 11 11 C 1.52996 * 109.47489 * 179.72326 * 8 6 5 12 12 C 1.52995 * 109.47466 * 174.99930 * 11 8 6 13 13 C 1.50698 * 109.47347 * 180.02562 * 12 11 8 14 14 C 1.38249 * 119.97408 * 269.72793 * 13 12 11 15 15 C 1.38193 * 120.02400 * 179.72522 * 14 13 12 16 16 C 1.38469 * 119.97595 * 0.56862 * 15 14 13 17 17 F 1.35100 * 120.02616 * 179.68131 * 16 15 14 18 18 C 1.38457 * 119.94371 * 359.70611 * 16 15 14 19 19 C 1.38192 * 119.97676 * 359.97438 * 18 16 15 20 20 N 1.46499 * 109.46818 * 120.00313 * 2 1 3 21 21 C 1.46495 * 120.00303 * 60.00017 * 20 2 1 22 22 C 1.36941 * 119.99681 * 239.99632 * 20 2 1 23 23 H 1.07994 * 120.00204 * 23.06894 * 22 20 2 24 24 C 1.38811 * 119.99950 * 203.07564 * 22 20 2 25 25 N 1.31617 * 120.00165 * 11.68352 * 24 22 20 26 26 Si 1.86802 * 120.00018 * 191.69271 * 24 22 20 27 27 H 1.48506 * 109.47331 * 89.99682 * 26 24 22 28 28 H 1.48502 * 109.47376 * 209.99329 * 26 24 22 29 29 H 1.48496 * 109.47333 * 329.99899 * 26 24 22 30 30 H 1.09004 * 109.47163 * 300.00290 * 1 2 3 31 31 H 1.08998 * 109.47009 * 59.99307 * 1 2 3 32 32 H 1.09003 * 109.47589 * 180.02562 * 1 2 3 33 33 H 1.09006 * 109.47061 * 64.99773 * 4 2 1 34 34 H 1.09000 * 109.46977 * 305.00642 * 4 2 1 35 35 H 0.96992 * 120.00506 * 359.97438 * 5 4 2 36 36 H 1.09002 * 109.46924 * 60.00357 * 10 8 6 37 37 H 1.09002 * 109.47460 * 179.97438 * 10 8 6 38 38 H 1.09002 * 109.47382 * 300.00556 * 10 8 6 39 39 H 1.09002 * 109.47215 * 295.00748 * 11 8 6 40 40 H 1.09008 * 109.47080 * 55.00231 * 11 8 6 41 41 H 1.08996 * 109.47459 * 300.00179 * 12 11 8 42 42 H 1.09000 * 109.46837 * 59.99824 * 12 11 8 43 43 H 1.08001 * 119.98765 * 359.97438 * 14 13 12 44 44 H 1.08003 * 120.01658 * 180.25374 * 15 14 13 45 45 H 1.08000 * 120.01009 * 179.97438 * 18 16 15 46 46 H 1.08007 * 119.98700 * 179.97438 * 19 18 16 47 47 H 1.08997 * 109.47472 * 93.95098 * 21 20 2 48 48 H 1.09004 * 109.46819 * 213.94883 * 21 20 2 49 49 H 1.09000 * 109.47208 * 333.94621 * 21 20 2 50 50 H 0.97006 * 120.00268 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5000 -0.8264 -1.1905 6 6 4.1730 -1.4284 -2.1912 7 8 3.5699 -1.8825 -3.1404 8 6 5.6744 -1.5421 -2.1279 9 1 6.1126 -0.5451 -2.0831 10 6 6.0739 -2.3313 -0.8796 11 6 6.1839 -2.2677 -3.3748 12 6 7.7138 -2.2735 -3.3720 13 6 8.2157 -2.9876 -4.6005 14 6 8.4461 -4.3502 -4.5615 15 6 8.9009 -5.0071 -5.6890 16 6 9.1371 -4.2982 -6.8548 17 9 9.5879 -4.9383 -7.9558 18 6 8.9114 -2.9326 -6.8909 19 6 8.4503 -2.2789 -5.7640 20 7 2.0183 -0.6907 1.1961 21 6 1.6644 -2.0932 1.4279 22 6 2.8056 -0.0252 2.0975 23 1 2.7713 1.0528 2.1520 24 6 3.6479 -0.7363 2.9412 25 7 3.8658 -2.0165 2.7274 26 14 4.4719 0.1238 4.3802 27 1 3.5998 0.0296 5.5786 28 1 5.7761 -0.5267 4.6649 29 1 4.6947 1.5523 4.0414 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 1.7516 -0.1583 -2.1370 34 1 1.6052 -1.7198 -1.2952 35 1 3.9824 -0.4623 -0.4320 36 1 5.6356 -3.3283 -0.9244 37 1 7.1598 -2.4139 -0.8340 38 1 5.7108 -1.8144 0.0088 39 1 5.8166 -3.2940 -3.3735 40 1 5.8241 -1.7542 -4.2665 41 1 8.0811 -1.2472 -3.3734 42 1 8.0736 -2.7869 -2.4804 43 1 8.2668 -4.9022 -3.6507 44 1 9.0770 -6.0723 -5.6596 45 1 9.0956 -2.3785 -7.7994 46 1 8.2745 -1.2136 -5.7919 47 1 2.4508 -2.7365 1.0332 48 1 1.5550 -2.2682 2.4983 49 1 0.7239 -2.3186 0.9250 50 1 4.4541 -2.5136 3.3172 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734040046.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:11:39 Heat of formation + Delta-G solvation = -72.307952 kcal Electronic energy + Delta-G solvation = -29011.384256 eV Core-core repulsion = 24952.282236 eV Total energy + Delta-G solvation = -4059.102020 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -49.88909 -40.91970 -40.07859 -38.42708 -36.46355 -35.30037 -33.81184 -32.78074 -32.05798 -31.03177 -28.96128 -27.95996 -27.22702 -25.87610 -24.86453 -23.98190 -23.24736 -21.75381 -21.05140 -20.35781 -18.78585 -18.63787 -17.95639 -17.38401 -17.13020 -16.95650 -16.58834 -16.42279 -16.22698 -15.85404 -15.25875 -15.16841 -14.84085 -14.67708 -14.42449 -14.35194 -14.31225 -14.15750 -13.72213 -13.64953 -13.53062 -13.29217 -13.10326 -12.80953 -12.60277 -12.56452 -12.49210 -12.41793 -12.35420 -12.23970 -12.05051 -11.95844 -11.72400 -11.69153 -11.48940 -11.44538 -10.63855 -10.54333 -10.04161 -9.82725 -9.47690 -8.71175 -7.71446 -5.20719 0.17020 0.30258 1.51732 1.56184 1.61452 1.78465 2.46252 2.57036 2.66329 3.31728 3.41685 3.68205 3.70743 3.78959 3.87228 3.98353 4.03515 4.11157 4.20057 4.31941 4.37951 4.42113 4.54956 4.57499 4.62741 4.64675 4.74953 4.80744 4.86707 4.87583 4.97263 5.00691 5.05806 5.10524 5.14364 5.15665 5.18625 5.29666 5.30541 5.33577 5.40645 5.48418 5.51585 5.66604 5.69608 5.76604 5.79266 5.96966 6.41069 6.78964 7.23910 7.41371 7.94429 8.41129 9.29389 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.015862 B = 0.002345 C = 0.002151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1764.798301 B =11938.874202 C =13013.812797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.157 3.843 3 H 0.073 0.927 4 C 0.113 3.887 5 N -0.702 5.702 6 C 0.506 3.494 7 O -0.597 6.597 8 C -0.100 4.100 9 H 0.117 0.883 10 C -0.133 4.133 11 C -0.081 4.081 12 C -0.076 4.076 13 C -0.092 4.092 14 C -0.096 4.096 15 C -0.158 4.158 16 C 0.066 3.934 17 F -0.152 7.152 18 C -0.156 4.156 19 C -0.092 4.092 20 N -0.600 5.600 21 C 0.183 3.817 22 C -0.259 4.259 23 H 0.071 0.929 24 C -0.037 4.037 25 N -0.923 5.923 26 Si 0.956 3.044 27 H -0.299 1.299 28 H -0.298 1.298 29 H -0.270 1.270 30 H 0.053 0.947 31 H 0.075 0.925 32 H 0.046 0.954 33 H 0.066 0.934 34 H 0.036 0.964 35 H 0.410 0.590 36 H 0.039 0.961 37 H 0.091 0.909 38 H 0.048 0.952 39 H 0.050 0.950 40 H 0.061 0.939 41 H 0.094 0.906 42 H 0.088 0.912 43 H 0.145 0.855 44 H 0.146 0.854 45 H 0.149 0.851 46 H 0.152 0.848 47 H 0.001 0.999 48 H 0.014 0.986 49 H 0.018 0.982 50 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.175 0.811 -13.785 16.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.050 3.950 3 H 0.092 0.908 4 C -0.013 4.013 5 N -0.352 5.352 6 C 0.294 3.706 7 O -0.479 6.479 8 C -0.121 4.121 9 H 0.135 0.865 10 C -0.191 4.191 11 C -0.119 4.119 12 C -0.113 4.113 13 C -0.092 4.092 14 C -0.114 4.114 15 C -0.177 4.177 16 C 0.048 3.952 17 F -0.131 7.131 18 C -0.175 4.175 19 C -0.110 4.110 20 N -0.323 5.323 21 C 0.038 3.962 22 C -0.389 4.389 23 H 0.088 0.912 24 C -0.233 4.233 25 N -0.569 5.569 26 Si 0.786 3.214 27 H -0.227 1.227 28 H -0.225 1.225 29 H -0.194 1.194 30 H 0.072 0.928 31 H 0.094 0.906 32 H 0.065 0.935 33 H 0.084 0.916 34 H 0.055 0.945 35 H 0.247 0.753 36 H 0.058 0.942 37 H 0.110 0.890 38 H 0.067 0.933 39 H 0.069 0.931 40 H 0.080 0.920 41 H 0.112 0.888 42 H 0.106 0.894 43 H 0.163 0.837 44 H 0.163 0.837 45 H 0.167 0.833 46 H 0.169 0.831 47 H 0.020 0.980 48 H 0.033 0.967 49 H 0.036 0.964 50 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 8.844 0.378 -14.373 16.881 hybrid contribution 0.472 -0.164 1.143 1.248 sum 9.317 0.214 -13.230 16.182 Atomic orbital electron populations 1.22070 0.95390 1.01508 1.01943 1.20817 0.94056 0.95560 0.84570 0.90843 1.21813 0.80585 0.99796 0.99096 1.45951 1.08006 1.58103 1.23094 1.21245 0.91404 0.76530 0.81442 1.90608 1.71634 1.50309 1.35388 1.21302 0.89913 1.02921 0.97925 0.86515 1.21703 1.02888 0.99172 0.95337 1.21235 0.94816 1.00049 0.95805 1.20683 0.93710 1.01753 0.95115 1.20169 0.98621 0.94132 0.96284 1.21202 0.97440 0.94241 0.98490 1.21350 1.02613 1.01595 0.92126 1.18006 1.01869 0.91688 0.83687 1.91462 1.87065 1.82279 1.52276 1.21370 1.02458 0.92548 1.01110 1.21220 0.97162 1.01366 0.91236 1.44029 1.57736 1.09243 1.21335 1.20399 0.93885 0.84906 0.97016 1.19444 1.15444 0.91348 1.12673 0.91154 1.25552 0.98897 0.96655 1.02209 1.70224 1.39728 1.08267 1.38644 0.85453 0.77214 0.78409 0.80339 1.22652 1.22472 1.19432 0.92776 0.90620 0.93504 0.91588 0.94542 0.75309 0.94169 0.89005 0.93335 0.93092 0.92021 0.88782 0.89384 0.83729 0.83668 0.83340 0.83056 0.98024 0.96703 0.96372 0.94556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.57 9.18 71.98 0.66 -3.91 16 2 C 0.16 5.65 2.87 44.99 0.13 5.78 16 3 H 0.07 2.57 7.86 -2.39 -0.02 2.55 16 4 C 0.11 4.08 4.97 86.38 0.43 4.50 16 5 N -0.70 -25.65 5.28 -463.06 -2.44 -28.09 16 6 C 0.51 17.94 7.16 87.66 0.63 18.57 16 7 O -0.60 -24.80 15.92 -3.06 -0.05 -24.85 16 8 C -0.10 -2.64 2.73 -11.54 -0.03 -2.68 16 9 H 0.12 2.54 8.14 -2.39 -0.02 2.52 16 10 C -0.13 -3.75 8.84 71.98 0.64 -3.11 16 11 C -0.08 -1.91 4.01 30.59 0.12 -1.79 16 12 C -0.08 -1.27 5.10 29.85 0.15 -1.12 16 13 C -0.09 -1.66 5.13 -19.86 -0.10 -1.76 16 14 C -0.10 -1.73 9.70 22.26 0.22 -1.52 16 15 C -0.16 -2.96 10.03 22.31 0.22 -2.73 16 16 C 0.07 1.35 7.30 22.38 0.16 1.52 16 17 F -0.15 -3.35 17.27 44.97 0.78 -2.57 16 18 C -0.16 -2.76 10.03 22.31 0.22 -2.54 16 19 C -0.09 -1.54 9.70 22.26 0.22 -1.32 16 20 N -0.60 -26.60 2.29 -702.80 -1.61 -28.21 16 21 C 0.18 8.59 8.11 127.77 1.04 9.63 16 22 C -0.26 -12.51 9.32 84.03 0.78 -11.73 16 23 H 0.07 3.32 7.82 -2.91 -0.02 3.29 16 24 C -0.04 -1.84 5.12 84.86 0.43 -1.40 16 25 N -0.92 -49.06 10.65 21.65 0.23 -48.83 16 26 Si 0.96 41.44 29.57 68.60 2.03 43.47 16 27 H -0.30 -13.34 7.11 99.48 0.71 -12.63 16 28 H -0.30 -13.14 7.11 99.48 0.71 -12.43 16 29 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 30 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 31 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 32 H 0.05 1.47 6.66 -2.39 -0.02 1.45 16 33 H 0.07 2.18 8.14 -2.38 -0.02 2.16 16 34 H 0.04 1.45 7.84 -2.39 -0.02 1.43 16 35 H 0.41 15.73 7.30 -92.71 -0.68 15.05 16 36 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.09 1.97 6.56 -2.39 -0.02 1.96 16 38 H 0.05 1.67 7.56 -2.39 -0.02 1.65 16 39 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 40 H 0.06 1.57 7.96 -2.38 -0.02 1.55 16 41 H 0.09 1.27 8.08 -2.39 -0.02 1.25 16 42 H 0.09 1.36 6.51 -2.39 -0.02 1.34 16 43 H 0.14 2.19 8.06 -2.91 -0.02 2.17 16 44 H 0.15 2.22 8.06 -2.91 -0.02 2.20 16 45 H 0.15 2.04 8.06 -2.91 -0.02 2.02 16 46 H 0.15 1.88 8.06 -2.91 -0.02 1.85 16 47 H 0.00 0.08 7.41 -2.39 -0.02 0.06 16 48 H 0.01 0.74 7.23 -2.39 -0.02 0.73 16 49 H 0.02 0.75 6.43 -2.39 -0.02 0.74 16 50 H 0.24 12.96 8.31 -92.70 -0.77 12.19 16 Total: -1.00 -60.97 406.19 5.11 -55.86 By element: Atomic # 1 Polarization: 28.58 SS G_CDS: 0.25 Total: 28.83 kcal Atomic # 6 Polarization: -1.54 SS G_CDS: 5.92 Total: 4.39 kcal Atomic # 7 Polarization: -101.31 SS G_CDS: -3.82 Total: -105.13 kcal Atomic # 8 Polarization: -24.80 SS G_CDS: -0.05 Total: -24.85 kcal Atomic # 9 Polarization: -3.35 SS G_CDS: 0.78 Total: -2.57 kcal Atomic # 14 Polarization: 41.44 SS G_CDS: 2.03 Total: 43.47 kcal Total: -60.97 5.11 -55.86 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734040046.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.447 kcal (2) G-P(sol) polarization free energy of solvation -60.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds