Wall clock time and date at job start Tue Mar 31 2020 20:11:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08995 * 109.47290 * 2 1 4 4 C 1.52995 * 109.47403 * 239.99880 * 2 1 3 5 5 C 1.53004 * 109.47010 * 65.00157 * 4 2 1 6 6 C 1.50701 * 109.47329 * 180.02562 * 5 4 2 7 7 C 1.38243 * 119.97484 * 269.73274 * 6 5 4 8 8 C 1.38198 * 120.02519 * 179.72840 * 7 6 5 9 9 C 1.38465 * 119.97195 * 0.55999 * 8 7 6 10 10 F 1.35101 * 120.02526 * 179.68805 * 9 8 7 11 11 C 1.38460 * 119.94954 * 359.70715 * 9 8 7 12 12 C 1.38197 * 119.97599 * 359.97438 * 11 9 8 13 13 C 1.50701 * 109.46988 * 120.00157 * 2 1 3 14 14 O 1.21279 * 120.00115 * 120.00125 * 13 2 1 15 15 N 1.34778 * 120.00249 * 299.99966 * 13 2 1 16 16 C 1.46494 * 120.00473 * 179.97438 * 15 13 2 17 17 C 1.53003 * 109.47287 * 180.02562 * 16 15 13 18 18 H 1.09003 * 109.47027 * 65.00201 * 17 16 15 19 19 C 1.53001 * 109.47158 * 184.99958 * 17 16 15 20 20 N 1.46497 * 109.47044 * 304.99842 * 17 16 15 21 21 C 1.46492 * 120.00594 * 300.00097 * 20 17 16 22 22 C 1.36944 * 119.99528 * 119.99961 * 20 17 16 23 23 H 1.08001 * 120.00236 * 23.12211 * 22 20 17 24 24 C 1.38816 * 119.99698 * 203.11977 * 22 20 17 25 25 N 1.31616 * 120.00268 * 11.68791 * 24 22 20 26 26 Si 1.86802 * 119.99737 * 191.68770 * 24 22 20 27 27 H 1.48503 * 109.47105 * 90.00442 * 26 24 22 28 28 H 1.48503 * 109.46815 * 209.99880 * 26 24 22 29 29 H 1.48494 * 109.47051 * 330.00241 * 26 24 22 30 30 H 1.09001 * 109.47312 * 299.99786 * 1 2 3 31 31 H 1.09005 * 109.47355 * 60.00250 * 1 2 3 32 32 H 1.09004 * 109.47037 * 179.97438 * 1 2 3 33 33 H 1.08996 * 109.47572 * 184.99984 * 4 2 1 34 34 H 1.09000 * 109.47556 * 305.00271 * 4 2 1 35 35 H 1.09008 * 109.47103 * 299.99945 * 5 4 2 36 36 H 1.08999 * 109.47358 * 59.99887 * 5 4 2 37 37 H 1.08000 * 119.98443 * 359.96605 * 7 6 5 38 38 H 1.07999 * 120.01325 * 180.25004 * 8 7 6 39 39 H 1.07995 * 120.01178 * 179.97438 * 11 9 8 40 40 H 1.07994 * 119.99011 * 179.97438 * 12 11 9 41 41 H 0.97008 * 119.99409 * 0.02562 * 15 13 2 42 42 H 1.09001 * 109.47078 * 60.00040 * 16 15 13 43 43 H 1.09004 * 109.47268 * 300.00179 * 16 15 13 44 44 H 1.08998 * 109.47405 * 179.97438 * 19 17 16 45 45 H 1.08993 * 109.47390 * 300.00107 * 19 17 16 46 46 H 1.09003 * 109.46953 * 60.00198 * 19 17 16 47 47 H 1.09007 * 109.47397 * 93.93410 * 21 20 17 48 48 H 1.08994 * 109.47896 * 213.93502 * 21 20 17 49 49 H 1.09003 * 109.46860 * 333.94208 * 21 20 17 50 50 H 0.97002 * 120.00537 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.6353 0.0690 -2.4953 6 6 2.1371 -0.6417 -3.7258 7 6 3.3884 -0.3447 -4.2330 8 6 3.8519 -0.9998 -5.3581 9 6 3.0578 -1.9457 -5.9841 10 9 3.5073 -2.5822 -7.0877 11 6 1.8025 -2.2384 -5.4784 12 6 1.3438 -1.5868 -4.3494 13 6 2.0323 -0.7105 1.2305 14 8 2.7295 -1.6965 1.1192 15 7 1.7067 -0.2501 2.4546 16 6 2.1945 -0.9410 3.6507 17 6 1.6840 -0.2200 4.9000 18 1 0.5977 -0.2969 4.9455 19 6 2.2936 -0.8654 6.1462 20 7 2.0717 1.1915 4.8419 21 6 3.4879 1.5601 4.7745 22 6 1.1101 2.1665 4.8505 23 1 0.1340 1.9587 5.2633 24 6 1.3901 3.4221 4.3287 25 7 2.4849 3.6125 3.6234 26 14 0.2130 4.8414 4.6277 27 1 0.5968 5.5483 5.8760 28 1 0.2767 5.7865 3.4840 29 1 -1.1702 4.3177 4.7606 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 3.1263 -0.7995 -1.2055 34 1 1.6054 -1.7198 -1.2952 35 1 0.5489 0.1472 -2.5390 36 1 2.0699 1.0675 -2.4494 37 1 4.0054 0.3969 -3.7475 38 1 4.8311 -0.7704 -5.7518 39 1 1.1822 -2.9757 -5.9661 40 1 0.3646 -1.8146 -3.9550 41 1 1.1487 0.5385 2.5436 42 1 3.2845 -0.9414 3.6510 43 1 1.8307 -1.9685 3.6506 44 1 1.9303 -0.3515 7.0361 45 1 2.0052 -1.9156 6.1894 46 1 3.3799 -0.7885 6.1007 47 1 3.7808 1.6887 3.7324 48 1 3.6466 2.4936 5.3142 49 1 4.0903 0.7720 5.2264 50 1 2.6804 4.4897 3.2585 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734040047.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:11:44 Heat of formation + Delta-G solvation = -73.081379 kcal Electronic energy + Delta-G solvation = -28922.457037 eV Core-core repulsion = 24863.321479 eV Total energy + Delta-G solvation = -4059.135559 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.59 seconds Orbital eigenvalues (eV) -49.89181 -40.92654 -40.08510 -38.44100 -36.46629 -35.31565 -33.81662 -32.79529 -32.06386 -31.04666 -28.97353 -27.97926 -27.22723 -25.88599 -24.88244 -23.98764 -23.25062 -21.76257 -21.05824 -20.37482 -18.81128 -18.64116 -17.95785 -17.39071 -17.11690 -16.96605 -16.58869 -16.43736 -16.31588 -15.84108 -15.29309 -15.12899 -14.84020 -14.65269 -14.52807 -14.39482 -14.30324 -14.07053 -13.80752 -13.58668 -13.54726 -13.31106 -13.12214 -12.81767 -12.60136 -12.58819 -12.47192 -12.45259 -12.34882 -12.24749 -12.06055 -11.96344 -11.73106 -11.70609 -11.50971 -11.45409 -10.64632 -10.56351 -10.04677 -9.83369 -9.48311 -8.73277 -7.73802 -5.23152 0.16441 0.29680 1.51289 1.55276 1.61141 1.79045 2.44818 2.56004 2.65629 3.31206 3.39768 3.67158 3.69932 3.78344 3.86257 3.97935 4.03187 4.09963 4.19114 4.30919 4.37386 4.41882 4.54081 4.57218 4.63467 4.64672 4.73754 4.79228 4.85519 4.88063 4.96160 5.02202 5.05049 5.09458 5.10056 5.14884 5.17996 5.29101 5.29564 5.32288 5.36577 5.45728 5.50912 5.65693 5.68434 5.75178 5.77608 5.96342 6.39399 6.78195 7.21917 7.40691 7.92785 8.39274 9.27605 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.015183 B = 0.002333 C = 0.002166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1843.687830 B =11999.634257 C =12922.724914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.105 4.105 3 H 0.095 0.905 4 C -0.080 4.080 5 C -0.076 4.076 6 C -0.092 4.092 7 C -0.098 4.098 8 C -0.158 4.158 9 C 0.067 3.933 10 F -0.152 7.152 11 C -0.155 4.155 12 C -0.090 4.090 13 C 0.507 3.493 14 O -0.597 6.597 15 N -0.702 5.702 16 C 0.113 3.887 17 C 0.157 3.843 18 H 0.074 0.926 19 C -0.150 4.150 20 N -0.601 5.601 21 C 0.182 3.818 22 C -0.257 4.257 23 H 0.072 0.928 24 C -0.041 4.041 25 N -0.928 5.928 26 Si 0.958 3.042 27 H -0.298 1.298 28 H -0.298 1.298 29 H -0.267 1.267 30 H 0.054 0.946 31 H 0.093 0.907 32 H 0.062 0.938 33 H 0.048 0.952 34 H 0.064 0.936 35 H 0.098 0.902 36 H 0.081 0.919 37 H 0.142 0.858 38 H 0.145 0.855 39 H 0.150 0.850 40 H 0.154 0.846 41 H 0.410 0.590 42 H 0.036 0.964 43 H 0.066 0.934 44 H 0.053 0.947 45 H 0.075 0.925 46 H 0.046 0.954 47 H 0.000 1.000 48 H 0.014 0.986 49 H 0.020 0.980 50 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.330 -8.744 -13.716 16.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.126 4.126 3 H 0.113 0.887 4 C -0.118 4.118 5 C -0.113 4.113 6 C -0.092 4.092 7 C -0.115 4.115 8 C -0.177 4.177 9 C 0.048 3.952 10 F -0.131 7.131 11 C -0.174 4.174 12 C -0.108 4.108 13 C 0.295 3.705 14 O -0.479 6.479 15 N -0.352 5.352 16 C -0.013 4.013 17 C 0.050 3.950 18 H 0.092 0.908 19 C -0.209 4.209 20 N -0.324 5.324 21 C 0.037 3.963 22 C -0.387 4.387 23 H 0.090 0.910 24 C -0.237 4.237 25 N -0.574 5.574 26 Si 0.788 3.212 27 H -0.225 1.225 28 H -0.225 1.225 29 H -0.192 1.192 30 H 0.073 0.927 31 H 0.112 0.888 32 H 0.081 0.919 33 H 0.067 0.933 34 H 0.083 0.917 35 H 0.116 0.884 36 H 0.099 0.901 37 H 0.160 0.840 38 H 0.163 0.837 39 H 0.168 0.832 40 H 0.172 0.828 41 H 0.247 0.753 42 H 0.055 0.945 43 H 0.084 0.916 44 H 0.073 0.927 45 H 0.094 0.906 46 H 0.065 0.935 47 H 0.019 0.981 48 H 0.033 0.967 49 H 0.038 0.962 50 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -3.781 -9.307 -13.868 17.124 hybrid contribution 0.017 1.284 0.076 1.287 sum -3.763 -8.023 -13.792 16.394 Atomic orbital electron populations 1.21801 0.91134 1.02886 1.03748 1.21300 0.99092 1.00449 0.91795 0.88681 1.21226 1.00438 0.98735 0.91444 1.20684 1.02772 0.98356 0.89472 1.20162 0.94586 0.97404 0.97069 1.21195 0.95825 0.99509 0.95019 1.21338 1.01230 0.97460 0.97673 1.18002 0.95078 0.96097 0.86030 1.91463 1.89552 1.80810 1.51231 1.21381 0.94919 1.02606 0.98483 1.21221 1.00889 0.94662 0.94041 1.21216 0.79425 0.84073 0.85812 1.90603 1.40698 1.28941 1.87702 1.45952 1.52385 1.31618 1.05200 1.21817 0.97899 0.95535 0.86048 1.20824 0.98458 0.83541 0.92171 0.90797 1.22069 1.00695 1.00594 0.97560 1.44051 1.02056 1.00499 1.85834 1.20403 0.83790 0.95025 0.97051 1.19478 0.95018 0.91979 1.32270 0.90978 1.25606 0.98980 1.00706 0.98375 1.70229 1.27571 1.21893 1.37749 0.85405 0.79539 0.79995 0.76230 1.22538 1.22507 1.19216 0.92655 0.88832 0.91903 0.93287 0.91733 0.88374 0.90069 0.84000 0.83735 0.83202 0.82829 0.75332 0.94507 0.91577 0.92743 0.90581 0.93489 0.98145 0.96700 0.96208 0.94542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.95 8.84 71.98 0.64 -2.32 16 2 C -0.11 -2.84 2.72 -11.54 -0.03 -2.87 16 3 H 0.10 2.68 8.14 -2.39 -0.02 2.66 16 4 C -0.08 -1.92 4.01 30.59 0.12 -1.80 16 5 C -0.08 -1.32 5.10 29.85 0.15 -1.17 16 6 C -0.09 -1.69 5.13 -19.86 -0.10 -1.79 16 7 C -0.10 -1.83 9.70 22.26 0.22 -1.62 16 8 C -0.16 -3.03 10.03 22.31 0.22 -2.80 16 9 C 0.07 1.37 7.30 22.38 0.16 1.53 16 10 F -0.15 -3.35 17.27 44.97 0.78 -2.57 16 11 C -0.16 -2.71 10.03 22.31 0.22 -2.49 16 12 C -0.09 -1.49 9.70 22.26 0.22 -1.27 16 13 C 0.51 18.12 7.15 87.66 0.63 18.75 16 14 O -0.60 -24.94 15.92 -3.03 -0.05 -24.99 16 15 N -0.70 -25.81 5.28 -463.06 -2.45 -28.25 16 16 C 0.11 4.09 4.97 86.38 0.43 4.52 16 17 C 0.16 5.67 2.87 44.99 0.13 5.80 16 18 H 0.07 2.59 7.87 -2.39 -0.02 2.57 16 19 C -0.15 -4.57 9.18 71.98 0.66 -3.91 16 20 N -0.60 -26.83 2.29 -702.78 -1.61 -28.43 16 21 C 0.18 8.63 8.11 127.77 1.04 9.66 16 22 C -0.26 -12.51 9.32 84.03 0.78 -11.72 16 23 H 0.07 3.40 7.82 -2.91 -0.02 3.38 16 24 C -0.04 -2.06 5.12 84.86 0.43 -1.62 16 25 N -0.93 -50.25 10.65 21.65 0.23 -50.02 16 26 Si 0.96 41.66 29.57 68.60 2.03 43.69 16 27 H -0.30 -13.28 7.11 99.48 0.71 -12.57 16 28 H -0.30 -13.20 7.11 99.48 0.71 -12.49 16 29 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 30 H 0.05 1.31 7.56 -2.39 -0.02 1.29 16 31 H 0.09 1.48 6.57 -2.38 -0.02 1.46 16 32 H 0.06 1.28 8.14 -2.38 -0.02 1.26 16 33 H 0.05 1.39 7.95 -2.39 -0.02 1.37 16 34 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 35 H 0.10 1.33 6.51 -2.38 -0.02 1.32 16 36 H 0.08 1.37 8.08 -2.39 -0.02 1.36 16 37 H 0.14 2.32 8.06 -2.91 -0.02 2.30 16 38 H 0.14 2.29 8.06 -2.91 -0.02 2.26 16 39 H 0.15 2.00 8.06 -2.91 -0.02 1.98 16 40 H 0.15 1.81 8.06 -2.91 -0.02 1.78 16 41 H 0.41 15.83 7.31 -92.70 -0.68 15.15 16 42 H 0.04 1.47 7.84 -2.39 -0.02 1.45 16 43 H 0.07 2.19 8.14 -2.38 -0.02 2.17 16 44 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 45 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 46 H 0.05 1.47 6.66 -2.39 -0.02 1.46 16 47 H 0.00 0.01 7.41 -2.38 -0.02 0.00 16 48 H 0.01 0.75 7.23 -2.39 -0.02 0.73 16 49 H 0.02 0.83 6.43 -2.39 -0.02 0.81 16 50 H 0.25 13.17 8.31 -92.71 -0.77 12.40 16 Total: -1.00 -61.89 406.22 5.10 -56.79 By element: Atomic # 1 Polarization: 28.68 SS G_CDS: 0.25 Total: 28.92 kcal Atomic # 6 Polarization: -1.06 SS G_CDS: 5.92 Total: 4.87 kcal Atomic # 7 Polarization: -102.88 SS G_CDS: -3.82 Total: -106.70 kcal Atomic # 8 Polarization: -24.94 SS G_CDS: -0.05 Total: -24.99 kcal Atomic # 9 Polarization: -3.35 SS G_CDS: 0.78 Total: -2.57 kcal Atomic # 14 Polarization: 41.66 SS G_CDS: 2.03 Total: 43.69 kcal Total: -61.89 5.10 -56.79 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734040047.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.296 kcal (2) G-P(sol) polarization free energy of solvation -61.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.59 seconds