Wall clock time and date at job start Tue Mar 31 2020 20:40:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09004 * 109.46865 * 2 1 4 4 C 1.52996 * 109.47260 * 239.99645 * 2 1 3 5 5 C 1.53007 * 109.46959 * 174.99734 * 4 2 1 6 6 C 1.53001 * 109.46960 * 180.02562 * 5 4 2 7 7 N 1.46891 * 109.47050 * 180.02562 * 6 5 4 8 8 C 1.46901 * 111.00048 * 180.02562 * 7 6 5 9 9 C 1.50704 * 109.47242 * 179.97438 * 8 7 6 10 10 O 1.21291 * 119.99979 * 359.97438 * 9 8 7 11 11 N 1.34776 * 119.99750 * 179.97438 * 9 8 7 12 12 C 1.37101 * 119.99673 * 179.97438 * 11 9 8 13 13 H 1.08001 * 120.00032 * 0.02562 * 12 11 9 14 14 C 1.38947 * 120.00029 * 180.02562 * 12 11 9 15 15 N 1.31410 * 120.00022 * 0.02562 * 14 12 11 16 16 Si 1.86802 * 120.00081 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47134 * 90.00343 * 16 14 12 18 18 H 1.48508 * 109.46998 * 210.00334 * 16 14 12 19 19 H 1.48496 * 109.47099 * 329.99879 * 16 14 12 20 20 N 1.46507 * 109.46937 * 119.99591 * 2 1 3 21 21 C 1.34768 * 120.00159 * 275.00102 * 20 2 1 22 22 O 1.21694 * 120.00335 * 354.41425 * 21 20 2 23 23 C 1.46681 * 119.99916 * 174.41543 * 21 20 2 24 24 C 1.37866 * 126.23151 * 4.71917 * 23 21 20 25 25 C 1.39838 * 107.08311 * 179.97438 * 24 23 21 26 26 C 1.35455 * 107.86839 * 0.02562 * 25 24 23 27 27 N 1.35537 * 108.86478 * 359.76124 * 26 25 24 28 28 C 1.46496 * 125.67207 * 180.26374 * 27 26 25 29 29 H 1.08995 * 109.47731 * 60.00129 * 1 2 3 30 30 H 1.09004 * 109.46865 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.47359 * 299.99653 * 1 2 3 32 32 H 1.08995 * 109.47398 * 294.99630 * 4 2 1 33 33 H 1.09003 * 109.47030 * 55.00582 * 4 2 1 34 34 H 1.08995 * 109.46981 * 300.00151 * 5 4 2 35 35 H 1.08994 * 109.46811 * 60.00533 * 5 4 2 36 36 H 1.09005 * 109.47232 * 300.00249 * 6 5 4 37 37 H 1.08999 * 109.46963 * 60.00014 * 6 5 4 38 38 H 1.00902 * 110.99860 * 303.95238 * 7 6 5 39 39 H 1.08998 * 109.47149 * 299.99550 * 8 7 6 40 40 H 1.08996 * 109.47399 * 59.99888 * 8 7 6 41 41 H 0.96999 * 120.00288 * 0.02562 * 11 9 8 42 42 H 0.97001 * 120.00621 * 179.97438 * 15 14 12 43 43 H 0.96999 * 119.99256 * 95.00706 * 20 2 1 44 44 H 1.07996 * 126.45915 * 359.93074 * 24 23 21 45 45 H 1.08001 * 126.06957 * 180.02562 * 25 24 23 46 46 H 1.07994 * 125.56422 * 179.97438 * 26 25 24 47 47 H 1.09002 * 109.47646 * 270.88207 * 28 27 26 48 48 H 1.08996 * 109.47607 * 30.88160 * 28 27 26 49 49 H 1.09002 * 109.47183 * 150.88368 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5649 -0.6132 -1.3136 6 6 4.0748 -1.3340 -2.5631 7 7 5.5388 -1.2308 -2.6246 8 6 6.0651 -1.9126 -3.8147 9 6 7.5665 -1.7852 -3.8439 10 8 8.1414 -1.1850 -2.9605 11 7 8.2702 -2.3382 -4.8516 12 6 9.6360 -2.2217 -4.8784 13 1 10.1479 -1.6873 -4.0919 14 6 10.3615 -2.7914 -5.9176 15 7 9.7385 -3.4412 -6.8749 16 14 12.2225 -2.6334 -5.9538 17 1 12.8307 -3.7797 -5.2318 18 1 12.6917 -2.6305 -7.3628 19 1 12.6244 -1.3643 -5.2958 20 7 2.0183 -0.6906 1.1963 21 6 2.1469 -0.0182 2.3572 22 8 1.9555 1.1832 2.3890 23 6 2.5177 -0.7345 3.5823 24 6 2.8517 -2.0687 3.6768 25 6 3.1335 -2.3275 5.0218 26 6 2.9697 -1.1725 5.7104 27 7 2.6004 -0.1958 4.8463 28 6 2.3316 1.2004 5.1994 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.7517 -1.7715 -1.2055 33 1 1.6054 -0.2618 -2.1369 34 1 3.8531 0.4370 -1.3573 35 1 3.9994 -1.0727 -0.4259 36 1 3.7865 -2.3843 -2.5199 37 1 3.6402 -0.8742 -3.4506 38 1 5.8347 -0.2664 -2.6004 39 1 5.7903 -2.9668 -3.7807 40 1 5.6446 -1.4562 -4.7107 41 1 7.8103 -2.8178 -5.5582 42 1 10.2449 -3.8386 -7.6006 43 1 2.2490 -1.6317 1.1527 44 1 2.8882 -2.7802 2.8651 45 1 3.4292 -3.2792 5.4379 46 1 3.1136 -1.0493 6.7736 47 1 1.2800 1.3125 5.4634 48 1 2.9519 1.4863 6.0489 49 1 2.5630 1.8413 4.3486 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734225399.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:40:10 Heat of formation + Delta-G solvation = -36.057705 kcal Electronic energy + Delta-G solvation = -27802.879714 eV Core-core repulsion = 23765.269584 eV Total energy + Delta-G solvation = -4037.610130 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.63485 -39.58645 -38.29213 -37.02765 -35.49354 -33.88474 -33.38331 -32.41403 -31.23708 -30.80601 -29.10625 -27.31098 -26.77454 -25.14956 -23.78368 -23.05929 -21.48626 -21.22040 -20.59531 -19.90906 -19.18254 -18.15175 -17.85761 -16.67378 -16.21797 -15.95296 -15.82669 -15.59557 -14.94122 -14.66176 -14.52682 -14.46151 -14.07052 -13.94122 -13.69126 -13.58992 -13.53454 -13.29503 -13.08821 -12.78367 -12.61129 -12.56360 -12.42808 -12.26176 -11.99138 -11.64681 -11.54939 -11.42172 -11.31170 -11.04868 -10.90551 -10.73577 -10.37949 -10.19995 -10.18232 -9.49145 -9.38027 -9.02642 -8.49807 -8.43440 -8.02231 -7.93631 -6.39958 -3.80677 1.21104 2.34954 2.47224 3.10529 3.16472 3.19390 3.27706 3.33851 3.93233 4.07138 4.25747 4.46126 4.52708 4.62990 4.70330 4.78533 4.85578 4.90822 5.06108 5.10649 5.13391 5.18080 5.26113 5.27752 5.31852 5.35654 5.40673 5.53100 5.59951 5.68887 5.74688 5.78215 5.82646 5.90203 5.92384 6.01179 6.09085 6.21347 6.26186 6.31201 6.47340 6.69839 6.90429 7.24999 7.27538 7.56987 7.70268 7.95682 8.08502 8.63494 9.19858 9.56454 10.08194 10.77836 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.014387 B = 0.001769 C = 0.001640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1945.729631 B =15825.198688 C =17071.900674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.144 3.856 3 H 0.091 0.909 4 C -0.125 4.125 5 C -0.118 4.118 6 C 0.059 3.941 7 N -0.671 5.671 8 C 0.051 3.949 9 C 0.441 3.559 10 O -0.583 6.583 11 N -0.565 5.565 12 C -0.299 4.299 13 H 0.103 0.897 14 C 0.021 3.979 15 N -0.902 5.902 16 Si 0.930 3.070 17 H -0.278 1.278 18 H -0.284 1.284 19 H -0.270 1.270 20 N -0.711 5.711 21 C 0.593 3.407 22 O -0.553 6.553 23 C -0.055 4.055 24 C -0.138 4.138 25 C -0.207 4.207 26 C 0.013 3.987 27 N -0.411 5.411 28 C 0.064 3.936 29 H 0.067 0.933 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.071 0.929 33 H 0.080 0.920 34 H 0.062 0.938 35 H 0.074 0.926 36 H 0.069 0.931 37 H 0.025 0.975 38 H 0.349 0.651 39 H 0.085 0.915 40 H 0.042 0.958 41 H 0.392 0.608 42 H 0.271 0.729 43 H 0.403 0.597 44 H 0.144 0.856 45 H 0.143 0.857 46 H 0.168 0.832 47 H 0.074 0.926 48 H 0.082 0.918 49 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.145 3.387 18.757 29.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.040 3.960 3 H 0.109 0.891 4 C -0.164 4.164 5 C -0.156 4.156 6 C -0.070 4.070 7 N -0.303 5.303 8 C -0.082 4.082 9 C 0.226 3.774 10 O -0.467 6.467 11 N -0.201 5.201 12 C -0.428 4.428 13 H 0.121 0.879 14 C -0.180 4.180 15 N -0.544 5.544 16 Si 0.757 3.243 17 H -0.204 1.204 18 H -0.210 1.210 19 H -0.194 1.194 20 N -0.362 5.362 21 C 0.381 3.619 22 O -0.432 6.432 23 C -0.169 4.169 24 C -0.165 4.165 25 C -0.231 4.231 26 C -0.123 4.123 27 N -0.084 5.084 28 C -0.077 4.077 29 H 0.086 0.914 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.089 0.911 33 H 0.098 0.902 34 H 0.081 0.919 35 H 0.092 0.908 36 H 0.088 0.912 37 H 0.043 0.957 38 H 0.168 0.832 39 H 0.103 0.897 40 H 0.060 0.940 41 H 0.225 0.775 42 H 0.081 0.919 43 H 0.239 0.761 44 H 0.162 0.838 45 H 0.161 0.839 46 H 0.185 0.815 47 H 0.092 0.908 48 H 0.101 0.899 49 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -21.800 4.423 19.658 29.686 hybrid contribution 0.524 -0.250 -1.200 1.333 sum -21.276 4.174 18.457 28.474 Atomic orbital electron populations 1.22185 0.95194 1.02242 1.02507 1.21023 0.93731 0.97871 0.83405 0.89064 1.21877 0.96365 1.01200 0.96931 1.21567 0.93933 1.01113 0.98984 1.21971 0.88278 1.00496 0.96279 1.60076 1.08076 1.21503 1.40637 1.21666 0.94974 1.00119 0.91430 1.19842 0.88152 0.84939 0.84465 1.90524 1.71169 1.46259 1.38742 1.41868 1.07410 1.48560 1.22299 1.19708 0.81554 1.32785 1.08778 0.87937 1.25264 1.00697 0.96620 0.95438 1.69611 1.36668 1.35992 1.12117 0.85852 0.82210 0.78925 0.77264 1.20385 1.20957 1.19438 1.45718 1.67239 1.14280 1.08971 1.16965 0.76394 0.86098 0.82453 1.90761 1.52225 1.14130 1.86125 1.20056 1.16883 0.93907 0.86006 1.21381 1.03944 0.93417 0.97743 1.20853 1.10139 0.98403 0.93696 1.22048 1.05970 0.88105 0.96134 1.43850 1.49300 1.09247 1.06003 1.22303 1.02279 0.79393 1.03765 0.91409 0.92315 0.92326 0.91063 0.90168 0.91885 0.90777 0.91217 0.95687 0.83233 0.89656 0.93975 0.77465 0.91903 0.76122 0.83800 0.83919 0.81455 0.90790 0.89947 0.87584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.19 9.48 37.15 0.35 -0.83 16 2 C 0.14 1.19 2.62 -67.93 -0.18 1.02 16 3 H 0.09 0.94 7.50 -51.93 -0.39 0.55 16 4 C -0.13 -0.92 4.75 -26.73 -0.13 -1.05 16 5 C -0.12 -1.20 5.36 -26.73 -0.14 -1.34 16 6 C 0.06 0.71 5.68 -3.83 -0.02 0.68 16 7 N -0.67 -11.07 6.13 -115.06 -0.70 -11.77 16 8 C 0.05 0.91 6.17 -4.97 -0.03 0.88 16 9 C 0.44 10.63 7.82 -10.98 -0.09 10.54 16 10 O -0.58 -16.22 15.78 5.55 0.09 -16.13 16 11 N -0.56 -14.54 5.29 -10.96 -0.06 -14.60 16 12 C -0.30 -8.45 9.68 -14.93 -0.14 -8.59 16 13 H 0.10 3.05 7.16 -52.49 -0.38 2.67 16 14 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 15 N -0.90 -24.74 13.05 55.50 0.72 -24.01 16 16 Si 0.93 21.26 29.55 -169.99 -5.02 16.24 16 17 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 18 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 19 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 20 N -0.71 -6.23 4.51 -55.11 -0.25 -6.48 16 21 C 0.59 6.72 7.74 -12.86 -0.10 6.62 16 22 O -0.55 -7.65 14.26 5.19 0.07 -7.57 16 23 C -0.06 -0.59 6.89 -81.98 -0.56 -1.15 16 24 C -0.14 -1.28 10.36 -39.12 -0.41 -1.68 16 25 C -0.21 -1.75 10.81 -39.98 -0.43 -2.19 16 26 C 0.01 0.10 11.38 -16.91 -0.19 -0.09 16 27 N -0.41 -3.91 3.16 -120.24 -0.38 -4.29 16 28 C 0.06 0.47 10.65 59.84 0.64 1.11 16 29 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.07 0.83 7.75 -51.93 -0.40 0.43 16 36 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.02 0.28 8.14 -51.93 -0.42 -0.14 16 38 H 0.35 6.01 8.43 -39.29 -0.33 5.68 16 39 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 40 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 41 H 0.39 9.61 7.90 -40.82 -0.32 9.29 16 42 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 43 H 0.40 2.83 7.50 -40.82 -0.31 2.52 16 44 H 0.14 1.02 7.45 -52.49 -0.39 0.63 16 45 H 0.14 0.93 8.06 -52.49 -0.42 0.51 16 46 H 0.17 0.79 8.06 -52.49 -0.42 0.37 16 47 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 48 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 49 H 0.11 1.00 6.19 -51.93 -0.32 0.67 16 LS Contribution 409.95 15.07 6.18 6.18 Total: -1.00 -34.87 409.95 -8.78 -43.65 By element: Atomic # 1 Polarization: 22.27 SS G_CDS: -7.89 Total: 14.38 kcal Atomic # 6 Polarization: 5.94 SS G_CDS: -1.53 Total: 4.41 kcal Atomic # 7 Polarization: -60.48 SS G_CDS: -0.67 Total: -61.15 kcal Atomic # 8 Polarization: -23.86 SS G_CDS: 0.16 Total: -23.70 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -34.87 -8.78 -43.65 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734225399.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.593 kcal (2) G-P(sol) polarization free energy of solvation -34.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds