Wall clock time and date at job start Tue Mar 31 2020 20:40:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09004 * 109.46865 * 2 1 4 4 C 1.52996 * 109.47260 * 239.99645 * 2 1 3 5 5 C 1.53007 * 109.46959 * 174.99734 * 4 2 1 6 6 C 1.53001 * 109.46960 * 180.02562 * 5 4 2 7 7 N 1.46891 * 109.47050 * 180.02562 * 6 5 4 8 8 C 1.46901 * 111.00048 * 180.02562 * 7 6 5 9 9 C 1.50704 * 109.47242 * 179.97438 * 8 7 6 10 10 O 1.21291 * 119.99979 * 359.97438 * 9 8 7 11 11 N 1.34776 * 119.99750 * 179.97438 * 9 8 7 12 12 C 1.37101 * 119.99673 * 179.97438 * 11 9 8 13 13 H 1.08001 * 120.00032 * 0.02562 * 12 11 9 14 14 C 1.38947 * 120.00029 * 180.02562 * 12 11 9 15 15 N 1.31410 * 120.00022 * 0.02562 * 14 12 11 16 16 Si 1.86802 * 120.00081 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47134 * 90.00343 * 16 14 12 18 18 H 1.48508 * 109.46998 * 210.00334 * 16 14 12 19 19 H 1.48496 * 109.47099 * 329.99879 * 16 14 12 20 20 N 1.46507 * 109.46937 * 119.99591 * 2 1 3 21 21 C 1.34768 * 120.00159 * 275.00102 * 20 2 1 22 22 O 1.21694 * 120.00335 * 354.41425 * 21 20 2 23 23 C 1.46681 * 119.99916 * 174.41543 * 21 20 2 24 24 C 1.37866 * 126.23151 * 4.71917 * 23 21 20 25 25 C 1.39838 * 107.08311 * 179.97438 * 24 23 21 26 26 C 1.35455 * 107.86839 * 0.02562 * 25 24 23 27 27 N 1.35537 * 108.86478 * 359.76124 * 26 25 24 28 28 C 1.46496 * 125.67207 * 180.26374 * 27 26 25 29 29 H 1.08995 * 109.47731 * 60.00129 * 1 2 3 30 30 H 1.09004 * 109.46865 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.47359 * 299.99653 * 1 2 3 32 32 H 1.08995 * 109.47398 * 294.99630 * 4 2 1 33 33 H 1.09003 * 109.47030 * 55.00582 * 4 2 1 34 34 H 1.08995 * 109.46981 * 300.00151 * 5 4 2 35 35 H 1.08994 * 109.46811 * 60.00533 * 5 4 2 36 36 H 1.09005 * 109.47232 * 300.00249 * 6 5 4 37 37 H 1.08999 * 109.46963 * 60.00014 * 6 5 4 38 38 H 1.00902 * 110.99860 * 303.95238 * 7 6 5 39 39 H 1.08998 * 109.47149 * 299.99550 * 8 7 6 40 40 H 1.08996 * 109.47399 * 59.99888 * 8 7 6 41 41 H 0.96999 * 120.00288 * 0.02562 * 11 9 8 42 42 H 0.97001 * 120.00621 * 179.97438 * 15 14 12 43 43 H 0.96999 * 119.99256 * 95.00706 * 20 2 1 44 44 H 1.07996 * 126.45915 * 359.93074 * 24 23 21 45 45 H 1.08001 * 126.06957 * 180.02562 * 25 24 23 46 46 H 1.07994 * 125.56422 * 179.97438 * 26 25 24 47 47 H 1.09002 * 109.47646 * 270.88207 * 28 27 26 48 48 H 1.08996 * 109.47607 * 30.88160 * 28 27 26 49 49 H 1.09002 * 109.47183 * 150.88368 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5649 -0.6132 -1.3136 6 6 4.0748 -1.3340 -2.5631 7 7 5.5388 -1.2308 -2.6246 8 6 6.0651 -1.9126 -3.8147 9 6 7.5665 -1.7852 -3.8439 10 8 8.1414 -1.1850 -2.9605 11 7 8.2702 -2.3382 -4.8516 12 6 9.6360 -2.2217 -4.8784 13 1 10.1479 -1.6873 -4.0919 14 6 10.3615 -2.7914 -5.9176 15 7 9.7385 -3.4412 -6.8749 16 14 12.2225 -2.6334 -5.9538 17 1 12.8307 -3.7797 -5.2318 18 1 12.6917 -2.6305 -7.3628 19 1 12.6244 -1.3643 -5.2958 20 7 2.0183 -0.6906 1.1963 21 6 2.1469 -0.0182 2.3572 22 8 1.9555 1.1832 2.3890 23 6 2.5177 -0.7345 3.5823 24 6 2.8517 -2.0687 3.6768 25 6 3.1335 -2.3275 5.0218 26 6 2.9697 -1.1725 5.7104 27 7 2.6004 -0.1958 4.8463 28 6 2.3316 1.2004 5.1994 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.7517 -1.7715 -1.2055 33 1 1.6054 -0.2618 -2.1369 34 1 3.8531 0.4370 -1.3573 35 1 3.9994 -1.0727 -0.4259 36 1 3.7865 -2.3843 -2.5199 37 1 3.6402 -0.8742 -3.4506 38 1 5.8347 -0.2664 -2.6004 39 1 5.7903 -2.9668 -3.7807 40 1 5.6446 -1.4562 -4.7107 41 1 7.8103 -2.8178 -5.5582 42 1 10.2449 -3.8386 -7.6006 43 1 2.2490 -1.6317 1.1527 44 1 2.8882 -2.7802 2.8651 45 1 3.4292 -3.2792 5.4379 46 1 3.1136 -1.0493 6.7736 47 1 1.2800 1.3125 5.4634 48 1 2.9519 1.4863 6.0489 49 1 2.5630 1.8413 4.3486 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734225399.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:40:09 Heat of formation + Delta-G solvation = -61.277127 kcal Electronic energy + Delta-G solvation = -27803.973310 eV Core-core repulsion = 23765.269584 eV Total energy + Delta-G solvation = -4038.703726 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.30371 -40.36942 -40.14274 -37.96627 -36.65813 -35.85788 -34.11870 -33.36443 -33.14857 -31.70860 -29.77930 -28.64628 -27.37987 -26.67361 -25.02899 -23.98053 -22.39102 -21.92833 -21.27274 -21.04356 -20.60710 -19.90334 -18.82502 -17.81841 -17.46156 -17.05876 -16.70647 -16.51545 -16.44711 -16.01086 -15.64384 -15.59789 -15.25356 -15.12178 -14.92093 -14.41921 -14.28328 -14.16649 -14.12788 -13.99580 -13.51976 -13.36270 -13.23275 -13.17193 -13.06596 -12.96868 -12.87280 -12.75359 -12.42941 -12.31109 -12.14738 -12.08548 -11.76127 -11.54527 -11.50751 -11.02714 -10.35859 -10.15219 -10.02234 -9.68115 -9.30167 -9.16600 -8.47150 -5.96040 0.48383 1.37878 1.41564 1.54421 1.71669 1.83215 2.04530 2.29128 2.38663 2.43576 2.93184 3.19916 3.50555 3.71998 3.86689 3.97785 4.06891 4.14334 4.19352 4.30612 4.33072 4.35777 4.44464 4.48576 4.53050 4.54914 4.59256 4.66013 4.71168 4.72198 4.82881 4.88870 4.93046 5.06053 5.17322 5.25601 5.28244 5.30717 5.40144 5.42376 5.55898 5.82658 5.90983 6.02831 6.13819 6.31709 6.40542 6.54008 6.59837 7.12061 7.18724 7.55548 8.11241 8.70172 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.014387 B = 0.001769 C = 0.001640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1945.729631 B =15825.198688 C =17071.900674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.144 3.856 3 H 0.067 0.933 4 C -0.112 4.112 5 C -0.112 4.112 6 C 0.062 3.938 7 N -0.689 5.689 8 C 0.066 3.934 9 C 0.435 3.565 10 O -0.626 6.626 11 N -0.573 5.573 12 C -0.335 4.335 13 H 0.077 0.923 14 C -0.013 4.013 15 N -0.919 5.919 16 Si 0.994 3.006 17 H -0.270 1.270 18 H -0.269 1.269 19 H -0.274 1.274 20 N -0.701 5.701 21 C 0.585 3.415 22 O -0.589 6.589 23 C -0.091 4.091 24 C -0.139 4.139 25 C -0.224 4.224 26 C 0.019 3.981 27 N -0.422 5.422 28 C 0.063 3.937 29 H 0.081 0.919 30 H 0.072 0.928 31 H 0.037 0.963 32 H 0.091 0.909 33 H 0.096 0.904 34 H 0.048 0.952 35 H 0.060 0.940 36 H 0.083 0.917 37 H 0.041 0.959 38 H 0.340 0.660 39 H 0.106 0.894 40 H 0.066 0.934 41 H 0.397 0.603 42 H 0.278 0.722 43 H 0.413 0.587 44 H 0.160 0.840 45 H 0.162 0.838 46 H 0.201 0.799 47 H 0.081 0.919 48 H 0.109 0.891 49 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.011 2.021 18.734 29.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.040 3.960 3 H 0.085 0.915 4 C -0.150 4.150 5 C -0.150 4.150 6 C -0.067 4.067 7 N -0.321 5.321 8 C -0.067 4.067 9 C 0.223 3.777 10 O -0.512 6.512 11 N -0.210 5.210 12 C -0.465 4.465 13 H 0.095 0.905 14 C -0.213 4.213 15 N -0.560 5.560 16 Si 0.817 3.183 17 H -0.196 1.196 18 H -0.194 1.194 19 H -0.199 1.199 20 N -0.352 5.352 21 C 0.375 3.625 22 O -0.472 6.472 23 C -0.204 4.204 24 C -0.166 4.166 25 C -0.247 4.247 26 C -0.116 4.116 27 N -0.095 5.095 28 C -0.077 4.077 29 H 0.100 0.900 30 H 0.091 0.909 31 H 0.057 0.943 32 H 0.110 0.890 33 H 0.114 0.886 34 H 0.067 0.933 35 H 0.079 0.921 36 H 0.102 0.898 37 H 0.059 0.941 38 H 0.158 0.842 39 H 0.124 0.876 40 H 0.084 0.916 41 H 0.231 0.769 42 H 0.088 0.912 43 H 0.250 0.750 44 H 0.177 0.823 45 H 0.179 0.821 46 H 0.218 0.782 47 H 0.100 0.900 48 H 0.128 0.872 49 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -22.705 3.016 19.599 30.146 hybrid contribution 0.770 0.164 -1.135 1.382 sum -21.935 3.180 18.464 28.848 Atomic orbital electron populations 1.22118 0.94038 1.03027 1.02212 1.21037 0.94550 0.96788 0.83664 0.91525 1.21795 0.94012 1.02425 0.96796 1.21492 0.95886 0.99876 0.97726 1.22078 0.85387 1.01724 0.97494 1.60107 1.11076 1.20908 1.40039 1.21535 0.90100 1.01824 0.93207 1.20967 0.90779 0.83027 0.82953 1.90491 1.72890 1.47739 1.40127 1.41934 1.06879 1.49136 1.23040 1.19660 0.83104 1.34451 1.09258 0.90474 1.26049 1.04967 0.95681 0.94606 1.69666 1.38286 1.35764 1.12278 0.84923 0.76796 0.78706 0.77869 1.19586 1.19405 1.19894 1.45695 1.66418 1.14619 1.08500 1.17240 0.76097 0.85829 0.83356 1.90734 1.54131 1.15568 1.86727 1.20181 1.19118 0.94716 0.86396 1.21709 1.02938 0.93115 0.98831 1.21209 1.10502 0.99522 0.93481 1.22673 1.04011 0.87521 0.97440 1.44112 1.49343 1.10076 1.05983 1.22351 1.03379 0.78386 1.03622 0.89988 0.90907 0.94348 0.89047 0.88589 0.93274 0.92145 0.89824 0.94089 0.84175 0.87594 0.91584 0.76887 0.91249 0.75032 0.82280 0.82090 0.78218 0.90037 0.87204 0.90085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.10 9.48 71.98 0.68 -1.42 16 2 C 0.14 2.32 2.62 44.99 0.12 2.43 16 3 H 0.07 1.43 7.50 -2.38 -0.02 1.41 16 4 C -0.11 -1.41 4.75 30.60 0.15 -1.26 16 5 C -0.11 -2.14 5.36 30.60 0.16 -1.98 16 6 C 0.06 1.32 5.68 86.31 0.49 1.82 16 7 N -0.69 -22.05 6.13 -517.94 -3.17 -25.22 16 8 C 0.07 2.26 6.17 85.56 0.53 2.79 16 9 C 0.44 21.15 7.82 87.66 0.69 21.84 16 10 O -0.63 -35.73 15.78 -3.06 -0.05 -35.78 16 11 N -0.57 -29.80 5.29 -306.98 -1.62 -31.42 16 12 C -0.34 -19.33 9.68 84.04 0.81 -18.51 16 13 H 0.08 4.76 7.16 -2.91 -0.02 4.74 16 14 C -0.01 -0.71 5.50 84.93 0.47 -0.25 16 15 N -0.92 -49.75 13.05 21.66 0.28 -49.47 16 16 Si 0.99 43.31 29.55 68.60 2.03 45.33 16 17 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 18 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 19 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 20 N -0.70 -12.29 4.51 -446.50 -2.02 -14.31 16 21 C 0.59 13.87 7.74 86.45 0.67 14.54 16 22 O -0.59 -17.44 14.26 -4.33 -0.06 -17.50 16 23 C -0.09 -1.97 6.89 40.35 0.28 -1.70 16 24 C -0.14 -2.48 10.36 22.57 0.23 -2.25 16 25 C -0.22 -3.47 10.81 22.01 0.24 -3.23 16 26 C 0.02 0.28 11.38 83.48 0.95 1.23 16 27 N -0.42 -7.90 3.16 -534.33 -1.69 -9.59 16 28 C 0.06 0.94 10.65 127.77 1.36 2.30 16 29 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.07 0.78 8.14 -2.38 -0.02 0.76 16 31 H 0.04 0.68 8.14 -2.38 -0.02 0.66 16 32 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 35 H 0.06 1.33 7.75 -2.39 -0.02 1.31 16 36 H 0.08 1.60 8.14 -2.38 -0.02 1.58 16 37 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 38 H 0.34 11.75 8.43 -89.69 -0.76 11.00 16 39 H 0.11 3.24 8.14 -2.39 -0.02 3.23 16 40 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 41 H 0.40 19.46 7.90 -92.71 -0.73 18.73 16 42 H 0.28 14.05 8.31 -92.71 -0.77 13.28 16 43 H 0.41 5.48 7.50 -92.71 -0.70 4.78 16 44 H 0.16 2.10 7.45 -2.91 -0.02 2.08 16 45 H 0.16 1.78 8.06 -2.91 -0.02 1.76 16 46 H 0.20 1.32 8.06 -2.91 -0.02 1.30 16 47 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 48 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 49 H 0.08 1.65 6.19 -2.39 -0.01 1.63 16 Total: -1.00 -77.71 409.95 0.32 -77.39 By element: Atomic # 1 Polarization: 45.42 SS G_CDS: -1.21 Total: 44.21 kcal Atomic # 6 Polarization: 8.53 SS G_CDS: 7.82 Total: 16.35 kcal Atomic # 7 Polarization: -121.79 SS G_CDS: -8.22 Total: -130.00 kcal Atomic # 8 Polarization: -53.17 SS G_CDS: -0.11 Total: -53.28 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.33 kcal Total: -77.71 0.32 -77.39 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734225399.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.114 kcal (2) G-P(sol) polarization free energy of solvation -77.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds