Wall clock time and date at job start Tue Mar 31 2020 20:41:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.53000 * 109.47233 * 239.99626 * 2 1 3 5 5 C 1.53005 * 109.46867 * 175.00027 * 4 2 1 6 6 C 1.53008 * 109.46774 * 180.02562 * 5 4 2 7 7 N 1.46497 * 109.46734 * 179.97438 * 6 5 4 8 8 C 1.36943 * 119.99762 * 179.97438 * 7 6 5 9 9 H 1.07994 * 119.99644 * 0.02562 * 8 7 6 10 10 C 1.38812 * 119.99581 * 180.02562 * 8 7 6 11 11 N 1.31621 * 119.99394 * 180.02562 * 10 8 7 12 12 Si 1.86793 * 120.00467 * 0.02562 * 10 8 7 13 13 H 1.48494 * 109.47318 * 89.99708 * 12 10 8 14 14 H 1.48501 * 109.47211 * 209.99716 * 12 10 8 15 15 H 1.48500 * 109.47329 * 329.99909 * 12 10 8 16 16 N 1.46499 * 109.46799 * 120.00100 * 2 1 3 17 17 C 1.34778 * 119.99771 * 274.99826 * 16 2 1 18 18 O 1.21279 * 120.00041 * 0.02562 * 17 16 2 19 19 C 1.50703 * 119.99935 * 180.02562 * 17 16 2 20 20 H 1.08995 * 109.47091 * 59.99897 * 19 17 16 21 21 C 1.53002 * 109.47014 * 300.00266 * 19 17 16 22 22 C 1.52997 * 109.47250 * 180.02562 * 19 17 16 23 23 C 1.50698 * 109.47431 * 184.99762 * 22 19 17 24 24 C 1.38272 * 119.98480 * 89.99743 * 23 22 19 25 25 C 1.38218 * 120.04954 * 179.97438 * 24 23 22 26 26 C 1.38220 * 120.02794 * 0.02562 * 25 24 23 27 27 C 1.38437 * 119.97415 * 359.97438 * 26 25 24 28 28 F 1.35099 * 120.02670 * 180.02562 * 27 26 25 29 29 C 1.38172 * 119.98792 * 269.72729 * 23 22 19 30 30 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 31 31 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 32 32 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 33 33 H 1.08990 * 109.47170 * 295.00238 * 4 2 1 34 34 H 1.09001 * 109.46952 * 55.00315 * 4 2 1 35 35 H 1.09000 * 109.47443 * 300.00098 * 5 4 2 36 36 H 1.09001 * 109.47099 * 60.00379 * 5 4 2 37 37 H 1.09000 * 109.47044 * 300.00132 * 6 5 4 38 38 H 1.09001 * 109.47171 * 60.00211 * 6 5 4 39 39 H 0.97003 * 120.00464 * 0.02562 * 7 6 5 40 40 H 0.97005 * 119.99558 * 180.02562 * 11 10 8 41 41 H 0.96998 * 120.00630 * 95.00428 * 16 2 1 42 42 H 1.08991 * 109.47341 * 59.99752 * 21 19 17 43 43 H 1.09000 * 109.46953 * 180.02562 * 21 19 17 44 44 H 1.09005 * 109.46885 * 299.99846 * 21 19 17 45 45 H 1.08998 * 109.47374 * 305.00137 * 22 19 17 46 46 H 1.09008 * 109.46968 * 64.99786 * 22 19 17 47 47 H 1.08004 * 119.97518 * 359.97438 * 24 23 22 48 48 H 1.08001 * 119.98925 * 180.02562 * 25 24 23 49 49 H 1.08001 * 120.01602 * 179.97438 * 26 25 24 50 50 H 1.07996 * 120.01564 * 359.97438 * 29 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5649 -0.6133 -1.3136 6 6 4.0749 -1.3341 -2.5632 7 7 5.5349 -1.2302 -2.6251 8 6 6.2187 -1.8044 -3.6633 9 1 5.6816 -2.3335 -4.4366 10 6 7.6021 -1.7064 -3.7217 11 7 8.2593 -2.2578 -4.7199 12 14 8.5310 -0.7919 -2.3838 13 1 8.8922 -1.7373 -1.2972 14 1 9.7669 -0.1995 -2.9556 15 1 7.6725 0.2883 -1.8349 16 7 2.0183 -0.6906 1.1962 17 6 2.1470 -0.0182 2.3571 18 8 1.8581 1.1584 2.4117 19 6 2.6498 -0.7285 3.5875 20 1 3.6490 -1.1203 3.3980 21 6 1.7062 -1.8828 3.9314 22 6 2.7005 0.2544 4.7589 23 6 3.3177 -0.4219 5.9558 24 6 4.6854 -0.3673 6.1516 25 6 5.2528 -0.9866 7.2492 26 6 4.4535 -1.6619 8.1523 27 6 3.0841 -1.7173 7.9574 28 9 2.3018 -2.3766 8.8397 29 6 2.5160 -1.0916 6.8603 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.7517 -1.7715 -1.2055 34 1 1.6055 -0.2618 -2.1369 35 1 3.8533 0.4369 -1.3572 36 1 3.9995 -1.0728 -0.4258 37 1 3.7865 -2.3844 -2.5199 38 1 3.6403 -0.8743 -3.4507 39 1 6.0173 -0.7553 -1.9303 40 1 9.2261 -2.1896 -4.7605 41 1 2.2490 -1.6318 1.1527 42 1 1.6696 -2.5831 3.0971 43 1 2.0696 -2.3962 4.8216 44 1 0.7068 -1.4909 4.1210 45 1 3.3014 1.1203 4.4809 46 1 1.6893 0.5780 5.0057 47 1 5.3108 0.1598 5.4462 48 1 6.3212 -0.9430 7.4013 49 1 4.8971 -2.1462 9.0097 50 1 1.4473 -1.1302 6.7098 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734262402.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:41:40 Heat of formation + Delta-G solvation = -74.615127 kcal Electronic energy + Delta-G solvation = -28279.284124 eV Core-core repulsion = 24220.082057 eV Total energy + Delta-G solvation = -4059.202067 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -49.24756 -40.47578 -39.43727 -37.04116 -35.28624 -35.00115 -32.70909 -31.70716 -30.98431 -30.71470 -29.70553 -27.22447 -25.95691 -24.42912 -23.09913 -22.73466 -21.82615 -21.00747 -20.79639 -20.11306 -17.80145 -17.52291 -17.16660 -16.74590 -16.53571 -16.47906 -15.94376 -15.55837 -14.83811 -14.70111 -14.57616 -14.34384 -14.07599 -13.95705 -13.76099 -13.61347 -13.39190 -13.08625 -12.90670 -12.60956 -12.55325 -12.48343 -12.28162 -12.23007 -12.08666 -11.72750 -11.57362 -11.40049 -11.31836 -11.28224 -11.00096 -10.92227 -10.55241 -10.41962 -10.12732 -9.87637 -9.60287 -9.34910 -9.19251 -9.04444 -8.90219 -7.23862 -5.77869 -3.13240 0.74614 0.79183 2.49405 2.96257 3.21213 3.36153 3.39165 3.44036 3.83196 4.21119 4.34049 4.44850 4.53815 4.58140 4.59901 4.62915 4.73647 4.83232 4.93770 4.95267 5.05091 5.06118 5.24498 5.32553 5.35743 5.38064 5.41430 5.51807 5.52731 5.54214 5.65175 5.67135 5.69741 5.76919 5.79926 5.83733 5.90631 5.92231 5.99276 6.07051 6.10752 6.13508 6.26707 6.40678 6.49584 6.73050 6.76657 7.35809 7.98746 8.07983 8.41466 9.20700 9.93266 10.13236 11.40630 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.009917 B = 0.002405 C = 0.002038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2822.837824 B =11641.500271 C =13738.596114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.140 3.860 3 H 0.088 0.912 4 C -0.123 4.123 5 C -0.129 4.129 6 C 0.157 3.843 7 N -0.758 5.758 8 C -0.244 4.244 9 H 0.090 0.910 10 C 0.002 3.998 11 N -0.935 5.935 12 Si 0.886 3.114 13 H -0.284 1.284 14 H -0.291 1.291 15 H -0.277 1.277 16 N -0.720 5.720 17 C 0.519 3.481 18 O -0.542 6.542 19 C -0.107 4.107 20 H 0.101 0.899 21 C -0.148 4.148 22 C -0.063 4.063 23 C -0.049 4.049 24 C -0.126 4.126 25 C -0.087 4.087 26 C -0.160 4.160 27 C 0.098 3.902 28 F -0.141 7.141 29 C -0.150 4.150 30 H 0.057 0.943 31 H 0.066 0.934 32 H 0.056 0.944 33 H 0.069 0.931 34 H 0.080 0.920 35 H 0.061 0.939 36 H 0.060 0.940 37 H 0.025 0.975 38 H 0.025 0.975 39 H 0.360 0.640 40 H 0.259 0.741 41 H 0.401 0.599 42 H 0.063 0.937 43 H 0.070 0.930 44 H 0.061 0.939 45 H 0.087 0.913 46 H 0.082 0.918 47 H 0.131 0.869 48 H 0.133 0.867 49 H 0.133 0.867 50 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.302 2.113 25.452 29.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.036 3.964 3 H 0.106 0.894 4 C -0.161 4.161 5 C -0.167 4.167 6 C 0.029 3.971 7 N -0.403 5.403 8 C -0.374 4.374 9 H 0.107 0.893 10 C -0.193 4.193 11 N -0.583 5.583 12 Si 0.716 3.284 13 H -0.211 1.211 14 H -0.217 1.217 15 H -0.204 1.204 16 N -0.372 5.372 17 C 0.305 3.695 18 O -0.419 6.419 19 C -0.128 4.128 20 H 0.120 0.880 21 C -0.205 4.205 22 C -0.101 4.101 23 C -0.049 4.049 24 C -0.144 4.144 25 C -0.105 4.105 26 C -0.178 4.178 27 C 0.078 3.922 28 F -0.120 7.120 29 C -0.169 4.169 30 H 0.076 0.924 31 H 0.085 0.915 32 H 0.075 0.925 33 H 0.088 0.912 34 H 0.099 0.901 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.043 0.957 38 H 0.043 0.957 39 H 0.193 0.807 40 H 0.069 0.931 41 H 0.235 0.765 42 H 0.082 0.918 43 H 0.089 0.911 44 H 0.080 0.920 45 H 0.106 0.894 46 H 0.101 0.899 47 H 0.149 0.851 48 H 0.151 0.849 49 H 0.151 0.849 50 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -15.505 2.816 25.282 29.791 hybrid contribution 0.851 -0.061 0.993 1.309 sum -14.654 2.755 26.275 30.211 Atomic orbital electron populations 1.22161 0.95394 1.02013 1.02410 1.21049 0.93693 0.97743 0.83934 0.89392 1.21841 0.96525 1.00978 0.96789 1.21782 0.94165 1.01337 0.99420 1.20632 0.84865 0.97081 0.94476 1.42734 1.01756 1.66979 1.28863 1.19076 0.89902 1.27292 1.01151 0.89258 1.24691 0.96207 1.00562 0.97867 1.69709 1.07302 1.49387 1.31883 0.86522 0.79731 0.79954 0.82186 1.21093 1.21696 1.20355 1.46129 1.67194 1.14187 1.09673 1.20525 0.77303 0.87149 0.84478 1.90698 1.50122 1.15998 1.85105 1.21287 1.01778 0.96953 0.92826 0.88048 1.21876 0.99081 0.96871 1.02695 1.20443 1.02423 0.97049 0.90174 1.19737 0.93368 0.96308 0.95530 1.21219 0.94460 1.00416 0.98281 1.21047 1.00152 0.95802 0.93526 1.21170 0.91939 1.02879 1.01857 1.17716 0.88829 0.96257 0.89360 1.91504 1.74534 1.78685 1.67274 1.21071 1.01078 1.00314 0.94417 0.92361 0.91549 0.92510 0.91247 0.90110 0.92019 0.92145 0.95692 0.95668 0.80739 0.93067 0.76453 0.91843 0.91100 0.91984 0.89427 0.89919 0.85082 0.84877 0.84862 0.84717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.46 9.48 37.16 0.35 -1.10 16 2 C 0.14 1.43 2.57 -67.93 -0.17 1.26 16 3 H 0.09 1.08 7.58 -51.93 -0.39 0.69 16 4 C -0.12 -1.30 4.75 -26.73 -0.13 -1.43 16 5 C -0.13 -1.83 5.22 -26.72 -0.14 -1.97 16 6 C 0.16 2.93 6.26 -4.04 -0.03 2.91 16 7 N -0.76 -18.12 5.41 -59.91 -0.32 -18.45 16 8 C -0.24 -6.99 10.47 -15.06 -0.16 -7.15 16 9 H 0.09 2.72 8.06 -52.49 -0.42 2.30 16 10 C 0.00 0.07 5.50 -17.43 -0.10 -0.03 16 11 N -0.93 -29.52 13.97 55.49 0.78 -28.75 16 12 Si 0.89 22.20 27.74 -169.99 -4.71 17.48 16 13 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 14 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 15 H -0.28 -6.57 6.52 56.52 0.37 -6.20 16 16 N -0.72 -6.78 4.42 -53.80 -0.24 -7.02 16 17 C 0.52 5.50 7.12 -10.98 -0.08 5.43 16 18 O -0.54 -7.69 15.58 5.56 0.09 -7.60 16 19 C -0.11 -0.84 2.72 -91.77 -0.25 -1.09 16 20 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 21 C -0.15 -0.95 8.67 37.16 0.32 -0.62 16 22 C -0.06 -0.51 4.19 -27.89 -0.12 -0.63 16 23 C -0.05 -0.38 4.70 -104.63 -0.49 -0.87 16 24 C -0.13 -0.92 9.70 -39.58 -0.38 -1.30 16 25 C -0.09 -0.59 10.04 -39.60 -0.40 -0.99 16 26 C -0.16 -1.18 10.03 -39.51 -0.40 -1.57 16 27 C 0.10 0.83 7.30 -39.42 -0.29 0.54 16 28 F -0.14 -1.34 17.27 2.25 0.04 -1.30 16 29 C -0.15 -1.17 7.96 -39.51 -0.31 -1.48 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 34 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 35 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.06 0.84 7.75 -51.93 -0.40 0.44 16 37 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.36 8.41 5.53 -40.82 -0.23 8.19 16 40 H 0.26 7.78 8.31 -40.82 -0.34 7.44 16 41 H 0.40 3.06 8.02 -40.82 -0.33 2.73 16 42 H 0.06 0.36 7.56 -51.93 -0.39 -0.04 16 43 H 0.07 0.45 6.28 -51.93 -0.33 0.12 16 44 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 45 H 0.09 0.78 7.90 -51.93 -0.41 0.37 16 46 H 0.08 0.68 8.08 -51.92 -0.42 0.26 16 47 H 0.13 0.83 8.06 -52.48 -0.42 0.40 16 48 H 0.13 0.63 8.06 -52.49 -0.42 0.21 16 49 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 50 H 0.13 0.90 8.05 -52.49 -0.42 0.47 16 LS Contribution 410.52 15.07 6.19 6.19 Total: -1.00 -34.13 410.52 -9.36 -43.49 By element: Atomic # 1 Polarization: 14.46 SS G_CDS: -8.41 Total: 6.05 kcal Atomic # 6 Polarization: -7.34 SS G_CDS: -2.76 Total: -10.10 kcal Atomic # 7 Polarization: -54.42 SS G_CDS: 0.21 Total: -54.21 kcal Atomic # 8 Polarization: -7.69 SS G_CDS: 0.09 Total: -7.60 kcal Atomic # 9 Polarization: -1.34 SS G_CDS: 0.04 Total: -1.30 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -4.71 Total: 17.48 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -34.13 -9.36 -43.49 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734262402.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.129 kcal (2) G-P(sol) polarization free energy of solvation -34.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds