Wall clock time and date at job start Tue Mar 31 2020 20:41:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.53000 * 109.47233 * 239.99626 * 2 1 3 5 5 C 1.53005 * 109.46867 * 175.00027 * 4 2 1 6 6 C 1.53008 * 109.46774 * 180.02562 * 5 4 2 7 7 N 1.46497 * 109.46734 * 179.97438 * 6 5 4 8 8 C 1.36943 * 119.99762 * 179.97438 * 7 6 5 9 9 H 1.07994 * 119.99644 * 0.02562 * 8 7 6 10 10 C 1.38812 * 119.99581 * 180.02562 * 8 7 6 11 11 N 1.31621 * 119.99394 * 180.02562 * 10 8 7 12 12 Si 1.86793 * 120.00467 * 0.02562 * 10 8 7 13 13 H 1.48494 * 109.47318 * 89.99708 * 12 10 8 14 14 H 1.48501 * 109.47211 * 209.99716 * 12 10 8 15 15 H 1.48500 * 109.47329 * 329.99909 * 12 10 8 16 16 N 1.46499 * 109.46799 * 120.00100 * 2 1 3 17 17 C 1.34778 * 119.99771 * 274.99826 * 16 2 1 18 18 O 1.21279 * 120.00041 * 0.02562 * 17 16 2 19 19 C 1.50703 * 119.99935 * 180.02562 * 17 16 2 20 20 H 1.08995 * 109.47091 * 59.99897 * 19 17 16 21 21 C 1.53002 * 109.47014 * 300.00266 * 19 17 16 22 22 C 1.52997 * 109.47250 * 180.02562 * 19 17 16 23 23 C 1.50698 * 109.47431 * 184.99762 * 22 19 17 24 24 C 1.38272 * 119.98480 * 89.99743 * 23 22 19 25 25 C 1.38218 * 120.04954 * 179.97438 * 24 23 22 26 26 C 1.38220 * 120.02794 * 0.02562 * 25 24 23 27 27 C 1.38437 * 119.97415 * 359.97438 * 26 25 24 28 28 F 1.35099 * 120.02670 * 180.02562 * 27 26 25 29 29 C 1.38172 * 119.98792 * 269.72729 * 23 22 19 30 30 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 31 31 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 32 32 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 33 33 H 1.08990 * 109.47170 * 295.00238 * 4 2 1 34 34 H 1.09001 * 109.46952 * 55.00315 * 4 2 1 35 35 H 1.09000 * 109.47443 * 300.00098 * 5 4 2 36 36 H 1.09001 * 109.47099 * 60.00379 * 5 4 2 37 37 H 1.09000 * 109.47044 * 300.00132 * 6 5 4 38 38 H 1.09001 * 109.47171 * 60.00211 * 6 5 4 39 39 H 0.97003 * 120.00464 * 0.02562 * 7 6 5 40 40 H 0.97005 * 119.99558 * 180.02562 * 11 10 8 41 41 H 0.96998 * 120.00630 * 95.00428 * 16 2 1 42 42 H 1.08991 * 109.47341 * 59.99752 * 21 19 17 43 43 H 1.09000 * 109.46953 * 180.02562 * 21 19 17 44 44 H 1.09005 * 109.46885 * 299.99846 * 21 19 17 45 45 H 1.08998 * 109.47374 * 305.00137 * 22 19 17 46 46 H 1.09008 * 109.46968 * 64.99786 * 22 19 17 47 47 H 1.08004 * 119.97518 * 359.97438 * 24 23 22 48 48 H 1.08001 * 119.98925 * 180.02562 * 25 24 23 49 49 H 1.08001 * 120.01602 * 179.97438 * 26 25 24 50 50 H 1.07996 * 120.01564 * 359.97438 * 29 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5649 -0.6133 -1.3136 6 6 4.0749 -1.3341 -2.5632 7 7 5.5349 -1.2302 -2.6251 8 6 6.2187 -1.8044 -3.6633 9 1 5.6816 -2.3335 -4.4366 10 6 7.6021 -1.7064 -3.7217 11 7 8.2593 -2.2578 -4.7199 12 14 8.5310 -0.7919 -2.3838 13 1 8.8922 -1.7373 -1.2972 14 1 9.7669 -0.1995 -2.9556 15 1 7.6725 0.2883 -1.8349 16 7 2.0183 -0.6906 1.1962 17 6 2.1470 -0.0182 2.3571 18 8 1.8581 1.1584 2.4117 19 6 2.6498 -0.7285 3.5875 20 1 3.6490 -1.1203 3.3980 21 6 1.7062 -1.8828 3.9314 22 6 2.7005 0.2544 4.7589 23 6 3.3177 -0.4219 5.9558 24 6 4.6854 -0.3673 6.1516 25 6 5.2528 -0.9866 7.2492 26 6 4.4535 -1.6619 8.1523 27 6 3.0841 -1.7173 7.9574 28 9 2.3018 -2.3766 8.8397 29 6 2.5160 -1.0916 6.8603 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.7517 -1.7715 -1.2055 34 1 1.6055 -0.2618 -2.1369 35 1 3.8533 0.4369 -1.3572 36 1 3.9995 -1.0728 -0.4258 37 1 3.7865 -2.3844 -2.5199 38 1 3.6403 -0.8743 -3.4507 39 1 6.0173 -0.7553 -1.9303 40 1 9.2261 -2.1896 -4.7605 41 1 2.2490 -1.6318 1.1527 42 1 1.6696 -2.5831 3.0971 43 1 2.0696 -2.3962 4.8216 44 1 0.7068 -1.4909 4.1210 45 1 3.3014 1.1203 4.4809 46 1 1.6893 0.5780 5.0057 47 1 5.3108 0.1598 5.4462 48 1 6.3212 -0.9430 7.4013 49 1 4.8971 -2.1462 9.0097 50 1 1.4473 -1.1302 6.7098 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734262402.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:41:39 Heat of formation + Delta-G solvation = -94.553841 kcal Electronic energy + Delta-G solvation = -28280.148731 eV Core-core repulsion = 24220.082057 eV Total energy + Delta-G solvation = -4060.066674 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -49.89985 -41.24073 -40.06507 -38.08888 -36.65845 -35.89192 -34.21882 -32.94712 -31.83325 -31.49269 -30.78800 -27.79078 -27.36562 -25.21423 -24.29085 -23.64952 -22.69679 -22.38973 -21.62961 -20.85334 -19.62166 -18.45571 -17.85761 -17.38205 -17.30057 -17.08957 -16.62897 -16.57627 -16.32752 -15.91780 -15.77139 -15.25704 -15.13990 -14.93296 -14.66987 -14.50328 -14.35651 -14.08240 -13.79439 -13.68296 -13.49182 -13.45562 -13.13705 -13.07223 -13.01001 -12.83195 -12.64407 -12.47291 -12.16082 -12.10953 -12.02940 -11.98621 -11.88866 -11.86273 -11.72132 -11.52658 -10.97100 -10.71466 -10.02819 -9.90116 -9.63083 -9.30067 -8.03831 -5.37407 0.17174 0.24304 1.37194 1.40853 1.48471 1.68440 2.23579 2.47742 2.63180 3.24480 3.27517 3.49838 3.60366 3.78968 3.84410 3.88117 4.00801 4.04419 4.11400 4.19268 4.20082 4.28649 4.38335 4.41605 4.46102 4.57307 4.66305 4.67687 4.82250 4.84480 4.85524 4.87123 4.92752 4.97847 5.02745 5.10389 5.14029 5.15012 5.19239 5.26551 5.32037 5.37403 5.38634 5.43138 5.56949 5.63092 5.74967 5.94430 6.20735 6.60778 7.07307 7.30372 7.84435 8.02697 9.17729 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.009917 B = 0.002405 C = 0.002038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2822.837824 B =11641.500271 C =13738.596114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.144 3.856 3 H 0.066 0.934 4 C -0.112 4.112 5 C -0.116 4.116 6 C 0.151 3.849 7 N -0.762 5.762 8 C -0.237 4.237 9 H 0.056 0.944 10 C -0.067 4.067 11 N -0.984 5.984 12 Si 0.959 3.041 13 H -0.274 1.274 14 H -0.296 1.296 15 H -0.254 1.254 16 N -0.713 5.713 17 C 0.517 3.483 18 O -0.582 6.582 19 C -0.100 4.100 20 H 0.111 0.889 21 C -0.143 4.143 22 C -0.058 4.058 23 C -0.052 4.052 24 C -0.131 4.131 25 C -0.088 4.088 26 C -0.163 4.163 27 C 0.078 3.922 28 F -0.151 7.151 29 C -0.152 4.152 30 H 0.043 0.957 31 H 0.074 0.926 32 H 0.071 0.929 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.053 0.947 36 H 0.067 0.933 37 H 0.029 0.971 38 H 0.021 0.979 39 H 0.365 0.635 40 H 0.258 0.742 41 H 0.412 0.588 42 H 0.075 0.925 43 H 0.073 0.927 44 H 0.059 0.941 45 H 0.076 0.924 46 H 0.076 0.924 47 H 0.141 0.859 48 H 0.155 0.845 49 H 0.147 0.853 50 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.623 2.105 27.261 31.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.039 3.961 3 H 0.084 0.916 4 C -0.150 4.150 5 C -0.154 4.154 6 C 0.025 3.975 7 N -0.408 5.408 8 C -0.368 4.368 9 H 0.074 0.926 10 C -0.258 4.258 11 N -0.635 5.635 12 Si 0.785 3.215 13 H -0.200 1.200 14 H -0.223 1.223 15 H -0.179 1.179 16 N -0.365 5.365 17 C 0.305 3.695 18 O -0.462 6.462 19 C -0.121 4.121 20 H 0.129 0.871 21 C -0.201 4.201 22 C -0.096 4.096 23 C -0.053 4.053 24 C -0.149 4.149 25 C -0.106 4.106 26 C -0.181 4.181 27 C 0.059 3.941 28 F -0.130 7.130 29 C -0.171 4.171 30 H 0.062 0.938 31 H 0.093 0.907 32 H 0.090 0.910 33 H 0.105 0.895 34 H 0.106 0.894 35 H 0.071 0.929 36 H 0.086 0.914 37 H 0.047 0.953 38 H 0.039 0.961 39 H 0.198 0.802 40 H 0.067 0.933 41 H 0.249 0.751 42 H 0.094 0.906 43 H 0.092 0.908 44 H 0.079 0.921 45 H 0.095 0.905 46 H 0.095 0.905 47 H 0.159 0.841 48 H 0.173 0.827 49 H 0.165 0.835 50 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -15.877 2.790 27.110 31.541 hybrid contribution 0.882 -0.091 0.354 0.955 sum -14.995 2.700 27.464 31.407 Atomic orbital electron populations 1.22091 0.94179 1.02879 1.02156 1.20931 0.94552 0.96591 0.84004 0.91611 1.21751 0.93737 1.02258 0.97251 1.21653 0.96552 1.00049 0.97167 1.20854 0.82063 0.97905 0.96637 1.42789 1.03803 1.66537 1.27659 1.19072 0.90202 1.26257 1.01304 0.92607 1.25570 0.97337 1.02233 1.00707 1.69895 1.07512 1.51601 1.34465 0.85356 0.77949 0.79133 0.79021 1.19964 1.22262 1.17907 1.46098 1.66570 1.14667 1.09173 1.20979 0.76562 0.86711 0.85292 1.90683 1.51971 1.17829 1.85749 1.21269 1.02453 0.97014 0.91394 0.87074 1.21858 0.98553 0.96380 1.03296 1.20346 1.01886 0.96796 0.90522 1.19689 0.93640 0.96549 0.95386 1.21435 0.94440 1.00336 0.98705 1.21314 1.01250 0.95063 0.92934 1.21413 0.91592 1.02710 1.02418 1.17945 0.89392 0.97056 0.89711 1.91477 1.74867 1.79003 1.67631 1.21149 1.01520 1.00171 0.94272 0.93772 0.90693 0.91032 0.89463 0.89429 0.92867 0.91449 0.95266 0.96095 0.80207 0.93301 0.75131 0.90648 0.90781 0.92144 0.90545 0.90545 0.84138 0.82704 0.83479 0.84106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.47 9.48 71.98 0.68 -1.79 16 2 C 0.14 2.66 2.57 44.99 0.12 2.78 16 3 H 0.07 1.55 7.58 -2.39 -0.02 1.54 16 4 C -0.11 -2.06 4.75 30.60 0.15 -1.91 16 5 C -0.12 -3.02 5.22 30.60 0.16 -2.86 16 6 C 0.15 5.42 6.26 86.38 0.54 5.97 16 7 N -0.76 -35.44 5.41 -343.44 -1.86 -37.30 16 8 C -0.24 -13.64 10.47 84.03 0.88 -12.76 16 9 H 0.06 3.51 8.06 -2.91 -0.02 3.48 16 10 C -0.07 -3.97 5.50 84.86 0.47 -3.51 16 11 N -0.98 -63.29 13.97 21.65 0.30 -62.99 16 12 Si 0.96 45.35 27.74 68.60 1.90 47.25 16 13 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 14 H -0.30 -14.19 7.11 99.48 0.71 -13.48 16 15 H -0.25 -10.93 6.52 99.48 0.65 -10.28 16 16 N -0.71 -11.90 4.42 -442.53 -1.96 -13.85 16 17 C 0.52 10.29 7.12 87.66 0.62 10.91 16 18 O -0.58 -16.32 15.58 -3.03 -0.05 -16.37 16 19 C -0.10 -1.42 2.72 -11.54 -0.03 -1.45 16 20 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 21 C -0.14 -1.55 8.67 71.98 0.62 -0.93 16 22 C -0.06 -0.88 4.19 29.85 0.12 -0.76 16 23 C -0.05 -0.74 4.70 -19.87 -0.09 -0.83 16 24 C -0.13 -1.69 9.70 22.27 0.22 -1.48 16 25 C -0.09 -1.01 10.04 22.26 0.22 -0.78 16 26 C -0.16 -2.15 10.03 22.31 0.22 -1.92 16 27 C 0.08 1.25 7.30 22.38 0.16 1.42 16 28 F -0.15 -2.78 17.27 44.97 0.78 -2.00 16 29 C -0.15 -2.23 7.96 22.31 0.18 -2.05 16 30 H 0.04 0.84 8.14 -2.39 -0.02 0.83 16 31 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 35 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 36 H 0.07 1.67 7.75 -2.39 -0.02 1.65 16 37 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 38 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 39 H 0.36 16.17 5.53 -92.71 -0.51 15.66 16 40 H 0.26 15.76 8.31 -92.70 -0.77 14.99 16 41 H 0.41 5.05 8.02 -92.71 -0.74 4.31 16 42 H 0.07 0.64 7.56 -2.39 -0.02 0.62 16 43 H 0.07 0.79 6.28 -2.39 -0.01 0.77 16 44 H 0.06 0.68 8.14 -2.38 -0.02 0.66 16 45 H 0.08 1.34 7.90 -2.39 -0.02 1.32 16 46 H 0.08 1.25 8.08 -2.38 -0.02 1.23 16 47 H 0.14 1.50 8.06 -2.91 -0.02 1.48 16 48 H 0.16 1.04 8.06 -2.91 -0.02 1.02 16 49 H 0.15 1.44 8.06 -2.91 -0.02 1.41 16 50 H 0.14 1.78 8.05 -2.91 -0.02 1.75 16 Total: -1.00 -74.52 410.52 3.98 -70.54 By element: Atomic # 1 Polarization: 27.06 SS G_CDS: -0.38 Total: 26.68 kcal Atomic # 6 Polarization: -17.20 SS G_CDS: 5.24 Total: -11.96 kcal Atomic # 7 Polarization: -110.64 SS G_CDS: -3.51 Total: -114.15 kcal Atomic # 8 Polarization: -16.32 SS G_CDS: -0.05 Total: -16.37 kcal Atomic # 9 Polarization: -2.78 SS G_CDS: 0.78 Total: -2.00 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 1.90 Total: 47.25 kcal Total: -74.52 3.98 -70.54 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734262402.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.011 kcal (2) G-P(sol) polarization free energy of solvation -74.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds