Wall clock time and date at job start Tue Mar 31 2020 21:02:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.47253 * 2 1 4 4 C 1.52999 * 109.47103 * 240.00357 * 2 1 3 5 5 C 1.53001 * 109.47074 * 175.00059 * 4 2 1 6 6 N 1.46504 * 109.46630 * 179.97438 * 5 4 2 7 7 C 1.36939 * 119.99297 * 180.02562 * 6 5 4 8 8 H 1.07997 * 120.00452 * 359.97438 * 7 6 5 9 9 C 1.38819 * 119.99570 * 180.02562 * 7 6 5 10 10 N 1.31616 * 119.99948 * 359.97438 * 9 7 6 11 11 Si 1.86797 * 119.99850 * 179.97438 * 9 7 6 12 12 H 1.48504 * 109.47410 * 359.97438 * 11 9 7 13 13 H 1.48503 * 109.47206 * 119.99737 * 11 9 7 14 14 H 1.48498 * 109.47245 * 239.99457 * 11 9 7 15 15 N 1.46498 * 109.47071 * 119.99667 * 2 1 3 16 16 C 1.34772 * 120.00067 * 274.99842 * 15 2 1 17 17 O 1.21568 * 120.00133 * 0.02562 * 16 15 2 18 18 C 1.47713 * 119.99769 * 180.02562 * 16 15 2 19 19 C 1.41499 * 126.51857 * 180.02562 * 18 16 15 20 20 C 1.35367 * 105.50197 * 179.79640 * 19 18 16 21 21 N 1.35028 * 107.23111 * 0.35230 * 20 19 18 22 22 C 1.46503 * 124.88738 * 179.89868 * 21 20 19 23 23 C 1.53175 * 109.53763 * 325.16050 * 22 21 20 24 24 C 1.53092 * 109.16179 * 176.85076 * 23 22 21 25 25 O 1.42910 * 109.41107 * 302.39040 * 24 23 22 26 26 C 1.42900 * 114.09727 * 61.16189 * 25 24 23 27 27 C 1.53090 * 109.41229 * 298.83586 * 26 25 24 28 28 N 1.28472 * 110.22920 * 359.62596 * 21 20 19 29 29 H 1.09001 * 109.47253 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46829 * 300.00407 * 1 2 3 31 31 H 1.08999 * 109.47181 * 59.99628 * 1 2 3 32 32 H 1.09005 * 109.46928 * 294.99767 * 4 2 1 33 33 H 1.08998 * 109.47777 * 54.99219 * 4 2 1 34 34 H 1.08997 * 109.47338 * 299.99502 * 5 4 2 35 35 H 1.09003 * 109.47147 * 59.99619 * 5 4 2 36 36 H 0.96998 * 120.00391 * 0.02562 * 6 5 4 37 37 H 0.97009 * 119.99886 * 180.02562 * 10 9 7 38 38 H 0.97006 * 119.99672 * 95.00790 * 15 2 1 39 39 H 1.07998 * 127.25006 * 0.05197 * 19 18 16 40 40 H 1.08000 * 126.38292 * 180.24567 * 20 19 18 41 41 H 1.08997 * 109.61242 * 204.94430 * 22 21 20 42 42 H 1.09006 * 109.52647 * 296.75376 * 23 22 21 43 43 H 1.08998 * 109.52537 * 56.94268 * 23 22 21 44 44 H 1.08998 * 109.48147 * 182.40843 * 24 23 22 45 45 H 1.08997 * 109.48550 * 62.37144 * 24 23 22 46 46 H 1.09003 * 109.47953 * 178.86010 * 26 25 24 47 47 H 1.08993 * 109.48568 * 58.82345 * 26 25 24 48 48 H 1.09001 * 109.52724 * 297.70937 * 27 26 25 49 49 H 1.08998 * 109.57540 * 177.55097 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5648 -0.6132 -1.3137 6 7 4.0531 -1.3043 -2.5097 7 6 5.3953 -1.3412 -2.7789 8 1 6.0937 -0.8605 -2.1100 9 6 5.8580 -1.9956 -3.9124 10 7 5.0067 -2.5809 -4.7279 11 14 7.6887 -2.0453 -4.2802 12 1 8.4272 -1.3174 -3.2172 13 1 8.1467 -3.4572 -4.3237 14 1 7.9476 -1.4004 -5.5926 15 7 2.0183 -0.6905 1.1962 16 6 2.1471 -0.0181 2.3571 17 8 1.8575 1.1613 2.4118 18 6 2.6400 -0.7143 3.5630 19 6 2.8268 -0.1468 4.8457 20 6 3.2843 -1.1552 5.6243 21 7 3.3711 -2.2545 4.8451 22 6 3.8282 -3.5700 5.2998 23 6 4.9280 -3.3948 6.3514 24 6 5.3440 -4.7710 6.8776 25 8 4.2014 -5.4383 7.4174 26 6 3.1595 -5.6719 6.4678 27 6 2.6558 -4.3319 5.9252 28 7 2.9897 -1.9823 3.6488 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 1.7516 -1.7715 -1.2056 33 1 1.6053 -0.2618 -2.1370 34 1 3.8532 0.4370 -1.3574 35 1 3.9995 -1.0727 -0.4259 36 1 3.4258 -1.7357 -3.1107 37 1 5.3301 -3.0385 -5.5198 38 1 2.2491 -1.6317 1.1526 39 1 2.6396 0.8747 5.1422 40 1 3.5350 -1.0918 6.6729 41 1 4.2197 -4.1340 4.4533 42 1 5.7890 -2.9021 5.8996 43 1 4.5512 -2.7885 7.1752 44 1 6.0963 -4.6499 7.6570 45 1 5.7583 -5.3624 6.0611 46 1 2.3380 -6.1999 6.9520 47 1 3.5451 -6.2750 5.6459 48 1 2.2330 -3.7446 6.7403 49 1 1.8911 -4.5084 5.1688 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753965839.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:02:38 Heat of formation + Delta-G solvation = -0.922878 kcal Electronic energy + Delta-G solvation = -28841.679732 eV Core-core repulsion = 24805.593163 eV Total energy + Delta-G solvation = -4036.086569 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.92525 -39.89883 -39.35364 -36.43064 -35.23046 -34.29473 -32.06138 -31.88287 -31.19338 -30.94779 -30.03815 -27.81840 -25.96483 -24.37215 -24.07263 -23.25196 -22.32020 -21.50061 -20.57472 -20.32764 -19.96540 -18.25578 -17.24192 -16.86813 -16.75969 -16.41329 -16.11633 -15.85873 -15.41185 -14.89215 -14.56753 -14.49657 -14.09732 -13.96928 -13.88282 -13.74217 -13.42285 -13.29894 -13.19760 -13.01494 -12.77456 -12.31552 -12.14990 -12.03602 -11.79315 -11.56905 -11.17962 -11.12058 -11.03780 -10.99255 -10.76223 -10.59160 -10.51392 -10.35328 -9.99763 -9.95767 -9.67479 -9.43207 -9.23300 -8.90594 -8.80839 -6.88950 -5.74411 -3.02571 1.50864 1.99951 2.08661 3.24297 3.30569 3.44254 3.49966 3.50062 3.52381 3.73647 3.98143 4.21069 4.30890 4.42867 4.45325 4.55504 4.60024 4.73488 4.86257 4.93767 5.00314 5.05754 5.07542 5.18053 5.29750 5.32308 5.33477 5.42922 5.44647 5.54680 5.58634 5.62409 5.78611 5.83701 6.00019 6.09565 6.23071 6.30738 6.35093 6.39675 6.53510 6.54181 6.64255 6.88442 6.93246 7.56288 7.73316 7.85124 8.34575 8.44865 9.55869 10.14277 10.49292 11.48725 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.008676 B = 0.002710 C = 0.002238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3226.474736 B =10329.767496 C =12505.392030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.145 3.855 3 H 0.090 0.910 4 C -0.134 4.134 5 C 0.153 3.847 6 N -0.734 5.734 7 C -0.236 4.236 8 H 0.070 0.930 9 C -0.016 4.016 10 N -0.934 5.934 11 Si 0.906 3.094 12 H -0.281 1.281 13 H -0.292 1.292 14 H -0.291 1.291 15 N -0.705 5.705 16 C 0.605 3.395 17 O -0.538 6.538 18 C -0.013 4.013 19 C -0.178 4.178 20 C -0.021 4.021 21 N -0.277 5.277 22 C 0.148 3.852 23 C -0.167 4.167 24 C 0.065 3.935 25 O -0.380 6.380 26 C 0.065 3.935 27 C -0.167 4.167 28 N -0.257 5.257 29 H 0.056 0.944 30 H 0.057 0.943 31 H 0.067 0.933 32 H 0.068 0.932 33 H 0.080 0.920 34 H 0.018 0.982 35 H 0.019 0.981 36 H 0.383 0.617 37 H 0.254 0.746 38 H 0.407 0.593 39 H 0.162 0.838 40 H 0.178 0.822 41 H 0.113 0.887 42 H 0.090 0.910 43 H 0.086 0.914 44 H 0.106 0.894 45 H 0.060 0.940 46 H 0.104 0.896 47 H 0.060 0.940 48 H 0.082 0.918 49 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.489 -4.068 27.133 28.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.040 3.960 3 H 0.108 0.892 4 C -0.173 4.173 5 C 0.026 3.974 6 N -0.378 5.378 7 C -0.367 4.367 8 H 0.088 0.912 9 C -0.212 4.212 10 N -0.583 5.583 11 Si 0.738 3.262 12 H -0.206 1.206 13 H -0.219 1.219 14 H -0.218 1.218 15 N -0.356 5.356 16 C 0.389 3.611 17 O -0.414 6.414 18 C -0.174 4.174 19 C -0.206 4.206 20 C -0.163 4.163 21 N -0.065 5.065 22 C 0.047 3.953 23 C -0.205 4.205 24 C -0.012 4.012 25 O -0.298 6.298 26 C -0.013 4.013 27 C -0.205 4.205 28 N -0.092 5.092 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.098 0.902 34 H 0.036 0.964 35 H 0.037 0.963 36 H 0.217 0.783 37 H 0.064 0.936 38 H 0.242 0.758 39 H 0.179 0.821 40 H 0.195 0.805 41 H 0.131 0.869 42 H 0.108 0.892 43 H 0.104 0.896 44 H 0.124 0.876 45 H 0.078 0.922 46 H 0.122 0.878 47 H 0.078 0.922 48 H 0.100 0.900 49 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -6.403 -4.316 26.750 27.842 hybrid contribution 0.917 0.185 -0.323 0.990 sum -5.486 -4.132 26.428 27.305 Atomic orbital electron populations 1.22164 0.95370 1.02035 1.02330 1.21022 0.93630 0.97741 0.83598 0.89192 1.22060 0.98046 1.00830 0.96320 1.20643 0.90430 0.95617 0.90726 1.42375 1.05355 1.64941 1.25136 1.19288 0.83884 1.28179 1.05378 0.91234 1.24737 0.97679 1.01034 0.97704 1.69672 1.32634 1.40895 1.15147 0.86120 0.85163 0.77176 0.77789 1.20585 1.21896 1.21847 1.45983 1.66007 1.14540 1.09085 1.16869 0.77188 0.85606 0.81467 1.90772 1.51043 1.14948 1.84623 1.22021 1.08382 0.90759 0.96219 1.21768 1.06317 1.00725 0.91799 1.22740 1.07451 0.86833 0.99269 1.45606 1.45662 1.09587 1.05675 1.21605 0.95216 0.80027 0.98489 1.22642 0.98780 1.00371 0.98744 1.22583 0.88483 0.90444 0.99690 1.87986 1.27248 1.78095 1.36475 1.22596 0.90959 0.94712 0.93005 1.22668 0.97917 0.97914 1.02030 1.73548 1.15394 1.17222 1.03032 0.92532 0.92349 0.91449 0.91358 0.90154 0.96381 0.96294 0.78333 0.93614 0.75756 0.82080 0.80456 0.86908 0.89192 0.89572 0.87633 0.92192 0.87780 0.92211 0.89966 0.89371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.02 9.48 37.16 0.35 -1.66 16 2 C 0.14 2.12 2.57 -67.93 -0.17 1.95 16 3 H 0.09 1.45 7.58 -51.93 -0.39 1.06 16 4 C -0.13 -2.19 4.87 -26.73 -0.13 -2.32 16 5 C 0.15 3.22 6.15 -4.04 -0.02 3.20 16 6 N -0.73 -19.16 5.60 -59.90 -0.34 -19.49 16 7 C -0.24 -6.82 9.99 -15.06 -0.15 -6.97 16 8 H 0.07 1.98 7.83 -52.49 -0.41 1.56 16 9 C -0.02 -0.47 5.50 -17.43 -0.10 -0.56 16 10 N -0.93 -28.68 13.06 55.49 0.72 -27.96 16 11 Si 0.91 22.83 29.55 -169.99 -5.02 17.80 16 12 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 13 H -0.29 -7.33 7.11 56.52 0.40 -6.92 16 14 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 15 N -0.71 -10.39 4.53 -54.79 -0.25 -10.64 16 16 C 0.60 9.60 7.79 -12.39 -0.10 9.50 16 17 O -0.54 -9.84 16.59 5.31 0.09 -9.75 16 18 C -0.01 -0.19 7.13 -82.76 -0.59 -0.78 16 19 C -0.18 -2.09 10.81 -39.36 -0.43 -2.52 16 20 C -0.02 -0.19 10.54 -17.17 -0.18 -0.37 16 21 N -0.28 -2.77 3.22 -54.65 -0.18 -2.94 16 22 C 0.15 1.03 3.16 -67.75 -0.21 0.82 16 23 C -0.17 -0.84 5.10 -26.59 -0.14 -0.98 16 24 C 0.07 0.31 6.84 37.21 0.25 0.56 16 25 O -0.38 -2.48 10.77 -35.23 -0.38 -2.86 16 26 C 0.06 0.33 6.84 37.20 0.25 0.58 16 27 C -0.17 -0.98 5.75 -26.59 -0.15 -1.13 16 28 N -0.26 -3.35 11.67 33.42 0.39 -2.96 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 32 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 33 H 0.08 1.29 8.14 -51.93 -0.42 0.86 16 34 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.02 0.41 7.75 -51.93 -0.40 0.01 16 36 H 0.38 10.37 7.67 -40.82 -0.31 10.06 16 37 H 0.25 7.50 8.31 -40.82 -0.34 7.16 16 38 H 0.41 5.76 8.33 -40.82 -0.34 5.42 16 39 H 0.16 1.71 8.06 -52.49 -0.42 1.29 16 40 H 0.18 0.97 7.09 -52.49 -0.37 0.60 16 41 H 0.11 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.09 0.39 6.91 -51.93 -0.36 0.03 16 44 H 0.11 0.35 8.14 -51.93 -0.42 -0.07 16 45 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 46 H 0.10 0.41 8.14 -51.93 -0.42 -0.02 16 47 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 48 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 49 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 LS Contribution 402.33 15.07 6.06 6.06 Total: -1.00 -35.42 402.33 -8.47 -43.90 By element: Atomic # 1 Polarization: 17.59 SS G_CDS: -8.07 Total: 9.52 kcal Atomic # 6 Polarization: 0.82 SS G_CDS: -1.51 Total: -0.69 kcal Atomic # 7 Polarization: -64.34 SS G_CDS: 0.35 Total: -63.99 kcal Atomic # 8 Polarization: -12.32 SS G_CDS: -0.29 Total: -12.61 kcal Atomic # 14 Polarization: 22.83 SS G_CDS: -5.02 Total: 17.80 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -35.42 -8.47 -43.90 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753965839.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.975 kcal (2) G-P(sol) polarization free energy of solvation -35.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds