Wall clock time and date at job start Tue Mar 31 2020 21:02:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.47253 * 2 1 4 4 C 1.52999 * 109.47103 * 240.00357 * 2 1 3 5 5 C 1.53001 * 109.47074 * 175.00059 * 4 2 1 6 6 N 1.46504 * 109.46630 * 179.97438 * 5 4 2 7 7 C 1.36939 * 119.99297 * 180.02562 * 6 5 4 8 8 H 1.07997 * 120.00452 * 359.97438 * 7 6 5 9 9 C 1.38819 * 119.99570 * 180.02562 * 7 6 5 10 10 N 1.31616 * 119.99948 * 359.97438 * 9 7 6 11 11 Si 1.86797 * 119.99850 * 179.97438 * 9 7 6 12 12 H 1.48504 * 109.47410 * 359.97438 * 11 9 7 13 13 H 1.48503 * 109.47206 * 119.99737 * 11 9 7 14 14 H 1.48498 * 109.47245 * 239.99457 * 11 9 7 15 15 N 1.46498 * 109.47071 * 119.99667 * 2 1 3 16 16 C 1.34772 * 120.00067 * 274.99842 * 15 2 1 17 17 O 1.21568 * 120.00133 * 0.02562 * 16 15 2 18 18 C 1.47713 * 119.99769 * 180.02562 * 16 15 2 19 19 C 1.41499 * 126.51857 * 180.02562 * 18 16 15 20 20 C 1.35367 * 105.50197 * 179.79640 * 19 18 16 21 21 N 1.35028 * 107.23111 * 0.35230 * 20 19 18 22 22 C 1.46503 * 124.88738 * 179.89868 * 21 20 19 23 23 C 1.53175 * 109.53763 * 325.16050 * 22 21 20 24 24 C 1.53092 * 109.16179 * 176.85076 * 23 22 21 25 25 O 1.42910 * 109.41107 * 302.39040 * 24 23 22 26 26 C 1.42900 * 114.09727 * 61.16189 * 25 24 23 27 27 C 1.53090 * 109.41229 * 298.83586 * 26 25 24 28 28 N 1.28472 * 110.22920 * 359.62596 * 21 20 19 29 29 H 1.09001 * 109.47253 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46829 * 300.00407 * 1 2 3 31 31 H 1.08999 * 109.47181 * 59.99628 * 1 2 3 32 32 H 1.09005 * 109.46928 * 294.99767 * 4 2 1 33 33 H 1.08998 * 109.47777 * 54.99219 * 4 2 1 34 34 H 1.08997 * 109.47338 * 299.99502 * 5 4 2 35 35 H 1.09003 * 109.47147 * 59.99619 * 5 4 2 36 36 H 0.96998 * 120.00391 * 0.02562 * 6 5 4 37 37 H 0.97009 * 119.99886 * 180.02562 * 10 9 7 38 38 H 0.97006 * 119.99672 * 95.00790 * 15 2 1 39 39 H 1.07998 * 127.25006 * 0.05197 * 19 18 16 40 40 H 1.08000 * 126.38292 * 180.24567 * 20 19 18 41 41 H 1.08997 * 109.61242 * 204.94430 * 22 21 20 42 42 H 1.09006 * 109.52647 * 296.75376 * 23 22 21 43 43 H 1.08998 * 109.52537 * 56.94268 * 23 22 21 44 44 H 1.08998 * 109.48147 * 182.40843 * 24 23 22 45 45 H 1.08997 * 109.48550 * 62.37144 * 24 23 22 46 46 H 1.09003 * 109.47953 * 178.86010 * 26 25 24 47 47 H 1.08993 * 109.48568 * 58.82345 * 26 25 24 48 48 H 1.09001 * 109.52724 * 297.70937 * 27 26 25 49 49 H 1.08998 * 109.57540 * 177.55097 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5648 -0.6132 -1.3137 6 7 4.0531 -1.3043 -2.5097 7 6 5.3953 -1.3412 -2.7789 8 1 6.0937 -0.8605 -2.1100 9 6 5.8580 -1.9956 -3.9124 10 7 5.0067 -2.5809 -4.7279 11 14 7.6887 -2.0453 -4.2802 12 1 8.4272 -1.3174 -3.2172 13 1 8.1467 -3.4572 -4.3237 14 1 7.9476 -1.4004 -5.5926 15 7 2.0183 -0.6905 1.1962 16 6 2.1471 -0.0181 2.3571 17 8 1.8575 1.1613 2.4118 18 6 2.6400 -0.7143 3.5630 19 6 2.8268 -0.1468 4.8457 20 6 3.2843 -1.1552 5.6243 21 7 3.3711 -2.2545 4.8451 22 6 3.8282 -3.5700 5.2998 23 6 4.9280 -3.3948 6.3514 24 6 5.3440 -4.7710 6.8776 25 8 4.2014 -5.4383 7.4174 26 6 3.1595 -5.6719 6.4678 27 6 2.6558 -4.3319 5.9252 28 7 2.9897 -1.9823 3.6488 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 1.7516 -1.7715 -1.2056 33 1 1.6053 -0.2618 -2.1370 34 1 3.8532 0.4370 -1.3574 35 1 3.9995 -1.0727 -0.4259 36 1 3.4258 -1.7357 -3.1107 37 1 5.3301 -3.0385 -5.5198 38 1 2.2491 -1.6317 1.1526 39 1 2.6396 0.8747 5.1422 40 1 3.5350 -1.0918 6.6729 41 1 4.2197 -4.1340 4.4533 42 1 5.7890 -2.9021 5.8996 43 1 4.5512 -2.7885 7.1752 44 1 6.0963 -4.6499 7.6570 45 1 5.7583 -5.3624 6.0611 46 1 2.3380 -6.1999 6.9520 47 1 3.5451 -6.2750 5.6459 48 1 2.2330 -3.7446 6.7403 49 1 1.8911 -4.5084 5.1688 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753965839.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:02:37 Heat of formation + Delta-G solvation = -25.901304 kcal Electronic energy + Delta-G solvation = -28842.762878 eV Core-core repulsion = 24805.593163 eV Total energy + Delta-G solvation = -4037.169715 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.76945 -40.76746 -40.17483 -37.87365 -36.12661 -35.84626 -33.67334 -32.49998 -32.31655 -31.89945 -31.06371 -29.43410 -26.69585 -25.88835 -24.81148 -24.30710 -23.16470 -22.98506 -21.85797 -21.20513 -20.80865 -19.32003 -18.91784 -17.96747 -17.33674 -17.27325 -16.93801 -16.70374 -16.63394 -15.90929 -15.77642 -15.56376 -15.44236 -15.21168 -15.00757 -14.73347 -14.66047 -14.51596 -14.32785 -14.02008 -13.60824 -13.43408 -13.12362 -12.92558 -12.91221 -12.65628 -12.43694 -12.41909 -12.25331 -12.07605 -12.02485 -11.96323 -11.92029 -11.66079 -11.54065 -11.23421 -10.98173 -10.74745 -10.35582 -10.16223 -9.97776 -9.03788 -7.98477 -5.27786 0.50178 1.15519 1.36356 1.44888 1.46089 1.56355 2.17508 2.36658 2.53121 2.87993 3.15922 3.34849 3.49418 3.53288 3.64415 3.80387 3.81987 3.84650 4.03598 4.12480 4.14895 4.17564 4.31328 4.38335 4.44865 4.54053 4.55851 4.62305 4.65437 4.69544 4.74334 4.74571 4.76111 4.84748 4.91093 4.94671 4.97690 5.04347 5.18875 5.24429 5.30997 5.32255 5.45423 5.52518 5.82047 6.15989 6.24142 6.42754 6.87966 7.15461 7.30496 8.04681 8.30260 9.25061 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.008676 B = 0.002710 C = 0.002238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3226.474736 B =10329.767496 C =12505.392030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.150 3.850 3 H 0.074 0.926 4 C -0.118 4.118 5 C 0.155 3.845 6 N -0.745 5.745 7 C -0.249 4.249 8 H 0.069 0.931 9 C -0.073 4.073 10 N -0.967 5.967 11 Si 0.974 3.026 12 H -0.270 1.270 13 H -0.289 1.289 14 H -0.290 1.290 15 N -0.702 5.702 16 C 0.601 3.399 17 O -0.571 6.571 18 C -0.044 4.044 19 C -0.198 4.198 20 C 0.000 4.000 21 N -0.271 5.271 22 C 0.139 3.861 23 C -0.159 4.159 24 C 0.064 3.936 25 O -0.395 6.395 26 C 0.066 3.934 27 C -0.159 4.159 28 N -0.276 5.276 29 H 0.067 0.933 30 H 0.051 0.949 31 H 0.082 0.918 32 H 0.076 0.924 33 H 0.087 0.913 34 H 0.009 0.991 35 H 0.016 0.984 36 H 0.376 0.624 37 H 0.253 0.747 38 H 0.410 0.590 39 H 0.166 0.834 40 H 0.219 0.781 41 H 0.107 0.893 42 H 0.090 0.910 43 H 0.097 0.903 44 H 0.121 0.879 45 H 0.063 0.937 46 H 0.116 0.884 47 H 0.064 0.936 48 H 0.084 0.916 49 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.915 -4.782 28.938 29.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.045 3.955 3 H 0.092 0.908 4 C -0.156 4.156 5 C 0.028 3.972 6 N -0.387 5.387 7 C -0.381 4.381 8 H 0.087 0.913 9 C -0.265 4.265 10 N -0.617 5.617 11 Si 0.803 3.197 12 H -0.194 1.194 13 H -0.216 1.216 14 H -0.217 1.217 15 N -0.352 5.352 16 C 0.387 3.613 17 O -0.449 6.449 18 C -0.202 4.202 19 C -0.226 4.226 20 C -0.142 4.142 21 N -0.059 5.059 22 C 0.039 3.961 23 C -0.198 4.198 24 C -0.013 4.013 25 O -0.314 6.314 26 C -0.012 4.012 27 C -0.197 4.197 28 N -0.113 5.113 29 H 0.086 0.914 30 H 0.070 0.930 31 H 0.101 0.899 32 H 0.094 0.906 33 H 0.105 0.895 34 H 0.027 0.973 35 H 0.034 0.966 36 H 0.208 0.792 37 H 0.062 0.938 38 H 0.246 0.754 39 H 0.184 0.816 40 H 0.236 0.764 41 H 0.125 0.875 42 H 0.109 0.891 43 H 0.116 0.884 44 H 0.139 0.861 45 H 0.081 0.919 46 H 0.134 0.866 47 H 0.082 0.918 48 H 0.102 0.898 49 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -5.833 -5.036 28.575 29.596 hybrid contribution 0.756 0.365 -0.803 1.162 sum -5.077 -4.670 27.772 28.616 Atomic orbital electron populations 1.22082 0.93235 1.02935 1.02751 1.20938 0.95167 0.96523 0.82837 0.90764 1.21898 0.94556 1.01667 0.97471 1.20731 0.93561 0.94223 0.88646 1.42548 1.04543 1.65274 1.26384 1.19622 0.85225 1.27815 1.05435 0.91307 1.25568 1.02164 1.01089 0.97689 1.69814 1.34553 1.41802 1.15556 0.85073 0.79945 0.77154 0.77574 1.19422 1.21553 1.21743 1.45979 1.65744 1.14571 1.08954 1.17166 0.76645 0.85345 0.82135 1.90737 1.52641 1.16240 1.85250 1.21912 1.10313 0.91611 0.96408 1.21988 1.07436 1.01789 0.91385 1.23277 1.05025 0.85451 1.00493 1.45974 1.44189 1.10771 1.04944 1.21925 0.96379 0.78801 0.98976 1.22630 0.97948 1.00941 0.98263 1.22709 0.88296 0.89990 1.00326 1.87971 1.27844 1.78313 1.37225 1.22662 0.91152 0.94218 0.93118 1.22603 0.97180 0.98275 1.01668 1.73486 1.16179 1.16833 1.04764 0.91370 0.92996 0.89936 0.90566 0.89472 0.97297 0.96648 0.79159 0.93819 0.75433 0.81634 0.76420 0.87518 0.89119 0.88407 0.86093 0.91889 0.86632 0.91759 0.89758 0.90186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.66 9.48 71.98 0.68 -2.98 16 2 C 0.15 4.39 2.57 44.99 0.12 4.50 16 3 H 0.07 2.44 7.58 -2.39 -0.02 2.42 16 4 C -0.12 -3.80 4.87 30.59 0.15 -3.65 16 5 C 0.15 6.56 6.15 86.38 0.53 7.10 16 6 N -0.74 -39.22 5.60 -343.43 -1.92 -41.15 16 7 C -0.25 -14.46 9.99 84.03 0.84 -13.62 16 8 H 0.07 3.92 7.83 -2.91 -0.02 3.89 16 9 C -0.07 -4.26 5.50 84.86 0.47 -3.79 16 10 N -0.97 -59.67 13.06 21.65 0.28 -59.38 16 11 Si 0.97 46.88 29.55 68.60 2.03 48.91 16 12 H -0.27 -12.35 7.11 99.48 0.71 -11.65 16 13 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 14 H -0.29 -13.87 7.11 99.48 0.71 -13.17 16 15 N -0.70 -20.96 4.53 -445.54 -2.02 -22.98 16 16 C 0.60 19.59 7.79 86.75 0.68 20.26 16 17 O -0.57 -21.49 16.59 -3.93 -0.07 -21.55 16 18 C -0.04 -1.25 7.13 42.46 0.30 -0.94 16 19 C -0.20 -4.54 10.81 22.41 0.24 -4.30 16 20 C 0.00 0.00 10.54 83.54 0.88 0.88 16 21 N -0.27 -5.05 3.22 -326.82 -1.05 -6.10 16 22 C 0.14 1.73 3.16 45.11 0.14 1.87 16 23 C -0.16 -1.23 5.10 30.68 0.16 -1.07 16 24 C 0.06 0.45 6.84 72.01 0.49 0.94 16 25 O -0.39 -4.31 10.77 -148.98 -1.60 -5.91 16 26 C 0.07 0.55 6.84 72.01 0.49 1.04 16 27 C -0.16 -1.61 5.75 30.68 0.18 -1.43 16 28 N -0.28 -7.14 11.67 -48.17 -0.56 -7.71 16 29 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 30 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.08 2.36 8.14 -2.38 -0.02 2.34 16 33 H 0.09 2.72 8.14 -2.39 -0.02 2.70 16 34 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 35 H 0.02 0.67 7.75 -2.39 -0.02 0.65 16 36 H 0.38 20.60 7.67 -92.71 -0.71 19.89 16 37 H 0.25 15.00 8.31 -92.70 -0.77 14.23 16 38 H 0.41 11.73 8.33 -92.70 -0.77 10.96 16 39 H 0.17 3.49 8.06 -2.91 -0.02 3.47 16 40 H 0.22 1.56 7.09 -2.91 -0.02 1.54 16 41 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 42 H 0.09 0.72 8.14 -2.38 -0.02 0.70 16 43 H 0.10 0.54 6.91 -2.39 -0.02 0.53 16 44 H 0.12 0.49 8.14 -2.39 -0.02 0.47 16 45 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 46 H 0.12 0.68 8.14 -2.39 -0.02 0.66 16 47 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 48 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 49 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 Total: -1.00 -76.34 402.33 0.91 -75.43 By element: Atomic # 1 Polarization: 36.15 SS G_CDS: -0.52 Total: 35.62 kcal Atomic # 6 Polarization: -1.53 SS G_CDS: 6.35 Total: 4.81 kcal Atomic # 7 Polarization: -132.04 SS G_CDS: -5.27 Total: -137.32 kcal Atomic # 8 Polarization: -25.80 SS G_CDS: -1.67 Total: -27.46 kcal Atomic # 14 Polarization: 46.88 SS G_CDS: 2.03 Total: 48.91 kcal Total: -76.34 0.91 -75.43 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753965839.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.531 kcal (2) G-P(sol) polarization free energy of solvation -76.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds