Wall clock time and date at job start Tue Mar 31 2020 21:02:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09007 * 109.47328 * 2 1 4 4 C 1.53000 * 109.47313 * 120.00144 * 2 1 3 5 5 C 1.52999 * 109.47433 * 185.00293 * 4 2 1 6 6 N 1.46499 * 109.47515 * 179.97438 * 5 4 2 7 7 C 1.36933 * 120.00221 * 179.97438 * 6 5 4 8 8 H 1.08003 * 120.00063 * 359.97438 * 7 6 5 9 9 C 1.38819 * 120.00200 * 180.02562 * 7 6 5 10 10 N 1.31617 * 119.99636 * 359.97438 * 9 7 6 11 11 Si 1.86794 * 120.00177 * 179.97438 * 9 7 6 12 12 H 1.48504 * 109.46813 * 89.99875 * 11 9 7 13 13 H 1.48492 * 109.47325 * 209.99643 * 11 9 7 14 14 H 1.48500 * 109.47134 * 330.00126 * 11 9 7 15 15 N 1.46504 * 109.47610 * 240.00018 * 2 1 3 16 16 C 1.34783 * 119.99780 * 84.99453 * 15 2 1 17 17 O 1.21574 * 119.99897 * 0.02562 * 16 15 2 18 18 C 1.47701 * 119.99751 * 180.02562 * 16 15 2 19 19 C 1.41509 * 126.51716 * 179.97438 * 18 16 15 20 20 C 1.35371 * 105.50208 * 179.76198 * 19 18 16 21 21 N 1.35036 * 107.22760 * 0.37331 * 20 19 18 22 22 C 1.46496 * 124.88168 * 179.87078 * 21 20 19 23 23 C 1.53175 * 109.54546 * 34.27944 * 22 21 20 24 24 C 1.53094 * 109.16661 * 183.15286 * 23 22 21 25 25 O 1.42898 * 109.41211 * 57.60371 * 24 23 22 26 26 C 1.42897 * 114.10001 * 298.84343 * 25 24 23 27 27 C 1.53089 * 109.41656 * 61.16248 * 26 25 24 28 28 N 1.28468 * 110.23203 * 359.60181 * 21 20 19 29 29 H 1.08996 * 109.47739 * 299.99703 * 1 2 3 30 30 H 1.08998 * 109.47399 * 60.00138 * 1 2 3 31 31 H 1.09006 * 109.47074 * 179.97438 * 1 2 3 32 32 H 1.09007 * 109.46759 * 305.00213 * 4 2 1 33 33 H 1.08992 * 109.47260 * 65.00266 * 4 2 1 34 34 H 1.09002 * 109.47434 * 300.00356 * 5 4 2 35 35 H 1.09006 * 109.46912 * 59.99788 * 5 4 2 36 36 H 0.97005 * 119.99808 * 0.02562 * 6 5 4 37 37 H 0.96997 * 120.00004 * 180.02562 * 10 9 7 38 38 H 0.96993 * 120.00087 * 265.00511 * 15 2 1 39 39 H 1.08000 * 127.24592 * 359.97438 * 19 18 16 40 40 H 1.07993 * 126.38466 * 180.25892 * 20 19 18 41 41 H 1.09004 * 109.61401 * 154.49559 * 22 21 20 42 42 H 1.09004 * 109.52259 * 303.05552 * 23 22 21 43 43 H 1.09006 * 109.52330 * 63.24385 * 23 22 21 44 44 H 1.09006 * 109.47665 * 297.62062 * 24 23 22 45 45 H 1.08993 * 109.47955 * 177.58818 * 24 23 22 46 46 H 1.09002 * 109.48425 * 301.17758 * 26 25 24 47 47 H 1.09002 * 109.48369 * 181.14801 * 26 25 24 48 48 H 1.08997 * 109.52675 * 182.48845 * 27 26 25 49 49 H 1.08994 * 109.57561 * 62.32552 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5648 -0.6133 1.3137 6 7 4.0531 -1.3034 2.5102 7 6 5.3952 -1.3400 2.7796 8 1 6.0938 -0.8605 2.1099 9 6 5.8580 -1.9944 3.9131 10 7 5.0067 -2.5792 4.7290 11 14 7.6888 -2.0450 4.2803 12 1 8.0598 -0.8705 5.1099 13 1 8.0116 -3.2932 5.0170 14 1 8.4504 -2.0113 3.0059 15 7 2.0184 -0.6906 -1.1962 16 6 2.1471 -0.0182 -2.3572 17 8 1.8582 1.1615 -2.4116 18 6 2.6390 -0.7146 -3.5633 19 6 2.8256 -0.1471 -4.8461 20 6 3.2916 -1.1533 -5.6225 21 7 3.3680 -2.2553 -4.8459 22 6 3.8249 -3.5708 -5.3007 23 6 4.9248 -3.3958 -6.3524 24 6 5.3404 -4.7721 -6.8787 25 8 4.1977 -5.4391 -7.4184 26 6 3.1557 -5.6725 -6.4688 27 6 2.6523 -4.3325 -5.9261 28 7 2.9877 -1.9828 -3.6494 29 1 -0.3634 0.5137 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6053 -0.2617 2.1370 33 1 1.7517 -1.7715 1.2055 34 1 3.9995 -1.0727 0.4260 35 1 3.8531 0.4371 1.3574 36 1 3.4258 -1.7350 3.1111 37 1 5.3300 -3.0361 5.5211 38 1 2.2490 -1.6317 -1.1526 39 1 2.6392 0.8747 -5.1422 40 1 3.5518 -1.0874 -6.6686 41 1 4.2163 -4.1350 -4.4542 42 1 4.5480 -2.7895 -7.1761 43 1 5.7858 -2.9034 -5.9004 44 1 5.7547 -5.3635 -6.0621 45 1 6.0926 -4.6511 -7.6581 46 1 3.5413 -6.2758 -5.6469 47 1 2.3341 -6.2004 -6.9530 48 1 1.8882 -4.5098 -5.1693 49 1 2.2289 -3.7446 -6.7404 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753965840.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:02:43 Heat of formation + Delta-G solvation = -0.860027 kcal Electronic energy + Delta-G solvation = -28841.218478 eV Core-core repulsion = 24805.134634 eV Total energy + Delta-G solvation = -4036.083844 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.92443 -39.89890 -39.35223 -36.42959 -35.23079 -34.29303 -32.06108 -31.88349 -31.19336 -30.94688 -30.03745 -27.81784 -25.96487 -24.37467 -24.07035 -23.25014 -22.31819 -21.49841 -20.57352 -20.32721 -19.96490 -18.25645 -17.24129 -16.86667 -16.76063 -16.41698 -16.11462 -15.85613 -15.41169 -14.89138 -14.56724 -14.49813 -14.10050 -13.96455 -13.88149 -13.74030 -13.42072 -13.30326 -13.19850 -13.01346 -12.76860 -12.31545 -12.15032 -12.03520 -11.79365 -11.56852 -11.17587 -11.11923 -11.03695 -10.98900 -10.74957 -10.58714 -10.52521 -10.35263 -10.02112 -9.96097 -9.66871 -9.43185 -9.23289 -8.90238 -8.80451 -6.88894 -5.74138 -3.02333 1.50869 1.99931 2.08664 3.24326 3.30622 3.44922 3.49812 3.50076 3.51582 3.73555 3.98189 4.21062 4.31000 4.42820 4.45347 4.55525 4.60183 4.73522 4.86227 4.93821 5.00298 5.05739 5.07547 5.18099 5.29722 5.32389 5.33518 5.43006 5.44721 5.54675 5.58734 5.62416 5.78731 5.83731 6.00083 6.09624 6.23112 6.30856 6.35197 6.39794 6.53569 6.54215 6.64317 6.88543 6.93348 7.56326 7.72903 7.85172 8.34608 8.45189 9.56052 10.14489 10.49515 11.48978 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.008679 B = 0.002709 C = 0.002238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3225.530085 B =10333.511083 C =12507.108083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.145 3.855 3 H 0.090 0.910 4 C -0.134 4.134 5 C 0.153 3.847 6 N -0.734 5.734 7 C -0.237 4.237 8 H 0.069 0.931 9 C -0.016 4.016 10 N -0.935 5.935 11 Si 0.907 3.093 12 H -0.290 1.290 13 H -0.291 1.291 14 H -0.282 1.282 15 N -0.705 5.705 16 C 0.605 3.395 17 O -0.539 6.539 18 C -0.013 4.013 19 C -0.178 4.178 20 C -0.021 4.021 21 N -0.277 5.277 22 C 0.148 3.852 23 C -0.167 4.167 24 C 0.065 3.935 25 O -0.380 6.380 26 C 0.065 3.935 27 C -0.166 4.166 28 N -0.257 5.257 29 H 0.067 0.933 30 H 0.057 0.943 31 H 0.056 0.944 32 H 0.080 0.920 33 H 0.068 0.932 34 H 0.019 0.981 35 H 0.018 0.982 36 H 0.383 0.617 37 H 0.255 0.745 38 H 0.407 0.593 39 H 0.162 0.838 40 H 0.178 0.822 41 H 0.113 0.887 42 H 0.086 0.914 43 H 0.090 0.910 44 H 0.060 0.940 45 H 0.106 0.894 46 H 0.060 0.940 47 H 0.104 0.896 48 H 0.088 0.912 49 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.476 -4.108 -27.114 28.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.040 3.960 3 H 0.108 0.892 4 C -0.173 4.173 5 C 0.026 3.974 6 N -0.378 5.378 7 C -0.368 4.368 8 H 0.087 0.913 9 C -0.211 4.211 10 N -0.584 5.584 11 Si 0.738 3.262 12 H -0.217 1.217 13 H -0.218 1.218 14 H -0.208 1.208 15 N -0.356 5.356 16 C 0.389 3.611 17 O -0.414 6.414 18 C -0.174 4.174 19 C -0.206 4.206 20 C -0.163 4.163 21 N -0.065 5.065 22 C 0.047 3.953 23 C -0.206 4.206 24 C -0.012 4.012 25 O -0.298 6.298 26 C -0.013 4.013 27 C -0.205 4.205 28 N -0.092 5.092 29 H 0.086 0.914 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.098 0.902 33 H 0.086 0.914 34 H 0.037 0.963 35 H 0.036 0.964 36 H 0.217 0.783 37 H 0.064 0.936 38 H 0.242 0.758 39 H 0.179 0.821 40 H 0.195 0.805 41 H 0.131 0.869 42 H 0.104 0.896 43 H 0.108 0.892 44 H 0.078 0.922 45 H 0.124 0.876 46 H 0.078 0.922 47 H 0.122 0.878 48 H 0.106 0.894 49 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -6.397 -4.372 -26.730 27.830 hybrid contribution 0.926 0.201 0.318 1.000 sum -5.470 -4.172 -26.412 27.293 Atomic orbital electron populations 1.22162 0.95369 1.02036 1.02330 1.21023 0.93628 0.97742 0.83596 0.89190 1.22059 0.98047 1.00827 0.96322 1.20642 0.90429 0.95622 0.90717 1.42364 1.05350 1.64991 1.25084 1.19241 0.83885 1.28284 1.05398 0.91293 1.24735 0.97677 1.00992 0.97718 1.69659 1.32740 1.40882 1.15098 0.86186 0.85157 0.77021 0.77838 1.21704 1.21770 1.20823 1.45984 1.66009 1.14537 1.09087 1.16870 0.77179 0.85611 0.81470 1.90774 1.51047 1.14933 1.84635 1.22021 1.08387 0.90790 0.96187 1.21772 1.06204 1.00778 0.91853 1.22743 1.07393 0.86782 0.99378 1.45605 1.45702 1.09467 1.05758 1.21604 0.95220 0.80035 0.98482 1.22645 0.98777 1.00381 0.98748 1.22582 0.88482 0.90444 0.99689 1.87983 1.27234 1.78106 1.36477 1.22597 0.90959 0.94712 0.93004 1.22664 0.97913 0.97902 1.02031 1.73547 1.15471 1.17236 1.02937 0.91441 0.92356 0.92534 0.90154 0.91359 0.96301 0.96390 0.78332 0.93560 0.75759 0.82078 0.80451 0.86920 0.89567 0.89192 0.92195 0.87632 0.92212 0.87778 0.89377 0.89960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.02 9.48 37.15 0.35 -1.67 16 2 C 0.14 2.12 2.57 -67.93 -0.17 1.95 16 3 H 0.09 1.45 7.58 -51.93 -0.39 1.06 16 4 C -0.13 -2.19 4.87 -26.73 -0.13 -2.32 16 5 C 0.15 3.22 6.15 -4.04 -0.02 3.20 16 6 N -0.73 -19.17 5.60 -59.91 -0.34 -19.50 16 7 C -0.24 -6.85 9.99 -15.06 -0.15 -7.00 16 8 H 0.07 1.95 7.83 -52.48 -0.41 1.54 16 9 C -0.02 -0.46 5.50 -17.43 -0.10 -0.55 16 10 N -0.93 -28.70 13.06 55.49 0.72 -27.98 16 11 Si 0.91 22.83 29.55 -169.99 -5.02 17.81 16 12 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 13 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 14 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 15 N -0.71 -10.40 4.53 -54.79 -0.25 -10.64 16 16 C 0.60 9.60 7.79 -12.39 -0.10 9.51 16 17 O -0.54 -9.84 16.59 5.30 0.09 -9.75 16 18 C -0.01 -0.19 7.13 -82.76 -0.59 -0.78 16 19 C -0.18 -2.09 10.81 -39.36 -0.43 -2.52 16 20 C -0.02 -0.19 10.53 -17.16 -0.18 -0.37 16 21 N -0.28 -2.77 3.23 -54.65 -0.18 -2.95 16 22 C 0.15 1.03 3.16 -67.75 -0.21 0.82 16 23 C -0.17 -0.85 5.09 -26.59 -0.14 -0.98 16 24 C 0.07 0.31 6.84 37.21 0.25 0.56 16 25 O -0.38 -2.48 10.76 -35.23 -0.38 -2.86 16 26 C 0.06 0.33 6.84 37.20 0.25 0.58 16 27 C -0.17 -0.98 5.75 -26.59 -0.15 -1.13 16 28 N -0.26 -3.35 11.67 33.42 0.39 -2.96 16 29 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 30 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.08 1.29 8.14 -51.93 -0.42 0.86 16 33 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 34 H 0.02 0.41 7.75 -51.93 -0.40 0.01 16 35 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 36 H 0.38 10.38 7.67 -40.82 -0.31 10.07 16 37 H 0.25 7.53 8.31 -40.82 -0.34 7.20 16 38 H 0.41 5.77 8.33 -40.82 -0.34 5.43 16 39 H 0.16 1.72 8.06 -52.49 -0.42 1.29 16 40 H 0.18 0.97 7.07 -52.49 -0.37 0.60 16 41 H 0.11 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.09 0.39 6.90 -51.93 -0.36 0.03 16 43 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 45 H 0.11 0.35 8.14 -51.93 -0.42 -0.07 16 46 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 47 H 0.10 0.41 8.14 -51.93 -0.42 -0.02 16 48 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 49 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 LS Contribution 402.31 15.07 6.06 6.06 Total: -1.00 -35.42 402.31 -8.47 -43.89 By element: Atomic # 1 Polarization: 17.65 SS G_CDS: -8.07 Total: 9.58 kcal Atomic # 6 Polarization: 0.81 SS G_CDS: -1.51 Total: -0.70 kcal Atomic # 7 Polarization: -64.39 SS G_CDS: 0.35 Total: -64.03 kcal Atomic # 8 Polarization: -12.32 SS G_CDS: -0.29 Total: -12.61 kcal Atomic # 14 Polarization: 22.83 SS G_CDS: -5.02 Total: 17.81 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -35.42 -8.47 -43.89 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753965840.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.033 kcal (2) G-P(sol) polarization free energy of solvation -35.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds