Wall clock time and date at job start Tue Mar 31 2020 21:02:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09007 * 109.47328 * 2 1 4 4 C 1.53000 * 109.47313 * 120.00144 * 2 1 3 5 5 C 1.52999 * 109.47433 * 185.00293 * 4 2 1 6 6 N 1.46499 * 109.47515 * 179.97438 * 5 4 2 7 7 C 1.36933 * 120.00221 * 179.97438 * 6 5 4 8 8 H 1.08003 * 120.00063 * 359.97438 * 7 6 5 9 9 C 1.38819 * 120.00200 * 180.02562 * 7 6 5 10 10 N 1.31617 * 119.99636 * 359.97438 * 9 7 6 11 11 Si 1.86794 * 120.00177 * 179.97438 * 9 7 6 12 12 H 1.48504 * 109.46813 * 89.99875 * 11 9 7 13 13 H 1.48492 * 109.47325 * 209.99643 * 11 9 7 14 14 H 1.48500 * 109.47134 * 330.00126 * 11 9 7 15 15 N 1.46504 * 109.47610 * 240.00018 * 2 1 3 16 16 C 1.34783 * 119.99780 * 84.99453 * 15 2 1 17 17 O 1.21574 * 119.99897 * 0.02562 * 16 15 2 18 18 C 1.47701 * 119.99751 * 180.02562 * 16 15 2 19 19 C 1.41509 * 126.51716 * 179.97438 * 18 16 15 20 20 C 1.35371 * 105.50208 * 179.76198 * 19 18 16 21 21 N 1.35036 * 107.22760 * 0.37331 * 20 19 18 22 22 C 1.46496 * 124.88168 * 179.87078 * 21 20 19 23 23 C 1.53175 * 109.54546 * 34.27944 * 22 21 20 24 24 C 1.53094 * 109.16661 * 183.15286 * 23 22 21 25 25 O 1.42898 * 109.41211 * 57.60371 * 24 23 22 26 26 C 1.42897 * 114.10001 * 298.84343 * 25 24 23 27 27 C 1.53089 * 109.41656 * 61.16248 * 26 25 24 28 28 N 1.28468 * 110.23203 * 359.60181 * 21 20 19 29 29 H 1.08996 * 109.47739 * 299.99703 * 1 2 3 30 30 H 1.08998 * 109.47399 * 60.00138 * 1 2 3 31 31 H 1.09006 * 109.47074 * 179.97438 * 1 2 3 32 32 H 1.09007 * 109.46759 * 305.00213 * 4 2 1 33 33 H 1.08992 * 109.47260 * 65.00266 * 4 2 1 34 34 H 1.09002 * 109.47434 * 300.00356 * 5 4 2 35 35 H 1.09006 * 109.46912 * 59.99788 * 5 4 2 36 36 H 0.97005 * 119.99808 * 0.02562 * 6 5 4 37 37 H 0.96997 * 120.00004 * 180.02562 * 10 9 7 38 38 H 0.96993 * 120.00087 * 265.00511 * 15 2 1 39 39 H 1.08000 * 127.24592 * 359.97438 * 19 18 16 40 40 H 1.07993 * 126.38466 * 180.25892 * 20 19 18 41 41 H 1.09004 * 109.61401 * 154.49559 * 22 21 20 42 42 H 1.09004 * 109.52259 * 303.05552 * 23 22 21 43 43 H 1.09006 * 109.52330 * 63.24385 * 23 22 21 44 44 H 1.09006 * 109.47665 * 297.62062 * 24 23 22 45 45 H 1.08993 * 109.47955 * 177.58818 * 24 23 22 46 46 H 1.09002 * 109.48425 * 301.17758 * 26 25 24 47 47 H 1.09002 * 109.48369 * 181.14801 * 26 25 24 48 48 H 1.08997 * 109.52675 * 182.48845 * 27 26 25 49 49 H 1.08994 * 109.57561 * 62.32552 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5648 -0.6133 1.3137 6 7 4.0531 -1.3034 2.5102 7 6 5.3952 -1.3400 2.7796 8 1 6.0938 -0.8605 2.1099 9 6 5.8580 -1.9944 3.9131 10 7 5.0067 -2.5792 4.7290 11 14 7.6888 -2.0450 4.2803 12 1 8.0598 -0.8705 5.1099 13 1 8.0116 -3.2932 5.0170 14 1 8.4504 -2.0113 3.0059 15 7 2.0184 -0.6906 -1.1962 16 6 2.1471 -0.0182 -2.3572 17 8 1.8582 1.1615 -2.4116 18 6 2.6390 -0.7146 -3.5633 19 6 2.8256 -0.1471 -4.8461 20 6 3.2916 -1.1533 -5.6225 21 7 3.3680 -2.2553 -4.8459 22 6 3.8249 -3.5708 -5.3007 23 6 4.9248 -3.3958 -6.3524 24 6 5.3404 -4.7721 -6.8787 25 8 4.1977 -5.4391 -7.4184 26 6 3.1557 -5.6725 -6.4688 27 6 2.6523 -4.3325 -5.9261 28 7 2.9877 -1.9828 -3.6494 29 1 -0.3634 0.5137 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6053 -0.2617 2.1370 33 1 1.7517 -1.7715 1.2055 34 1 3.9995 -1.0727 0.4260 35 1 3.8531 0.4371 1.3574 36 1 3.4258 -1.7350 3.1111 37 1 5.3300 -3.0361 5.5211 38 1 2.2490 -1.6317 -1.1526 39 1 2.6392 0.8747 -5.1422 40 1 3.5518 -1.0874 -6.6686 41 1 4.2163 -4.1350 -4.4542 42 1 4.5480 -2.7895 -7.1761 43 1 5.7858 -2.9034 -5.9004 44 1 5.7547 -5.3635 -6.0621 45 1 6.0926 -4.6511 -7.6581 46 1 3.5413 -6.2758 -5.6469 47 1 2.3341 -6.2004 -6.9530 48 1 1.8882 -4.5098 -5.1693 49 1 2.2289 -3.7446 -6.7404 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753965840.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:02:42 Heat of formation + Delta-G solvation = -25.839423 kcal Electronic energy + Delta-G solvation = -28842.301666 eV Core-core repulsion = 24805.134634 eV Total energy + Delta-G solvation = -4037.167032 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -43.76932 -40.76672 -40.17540 -37.87326 -36.12561 -35.84716 -33.67317 -32.50103 -32.31799 -31.89947 -31.06334 -29.43419 -26.69655 -25.88655 -24.81507 -24.30499 -23.16366 -22.98357 -21.85785 -21.20552 -20.80855 -19.31949 -18.91830 -17.96808 -17.33807 -17.27416 -16.93996 -16.70324 -16.63124 -15.90982 -15.77701 -15.55971 -15.44130 -15.21653 -15.00824 -14.73584 -14.66000 -14.51299 -14.32700 -14.02101 -13.60797 -13.43324 -13.11967 -12.91039 -12.90799 -12.65734 -12.43667 -12.41107 -12.28479 -12.07916 -12.02931 -11.96417 -11.92005 -11.66086 -11.54065 -11.23439 -10.97228 -10.74716 -10.35638 -10.16277 -9.97814 -9.03803 -7.98261 -5.27633 0.50090 1.15445 1.36300 1.44838 1.47101 1.55541 2.17479 2.36600 2.53333 2.87993 3.15798 3.34910 3.49400 3.53269 3.64410 3.80342 3.82047 3.84570 4.03610 4.12461 4.14858 4.17518 4.31316 4.38349 4.44780 4.54076 4.55818 4.62315 4.65378 4.69498 4.74298 4.74514 4.76114 4.84743 4.91071 4.94661 4.97624 5.04289 5.18869 5.24418 5.30982 5.32208 5.45142 5.52495 5.81993 6.16037 6.24222 6.42718 6.87927 7.15412 7.30555 8.04828 8.30402 9.25126 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.008679 B = 0.002709 C = 0.002238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3225.530085 B =10333.511083 C =12507.108083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.150 3.850 3 H 0.074 0.926 4 C -0.118 4.118 5 C 0.155 3.845 6 N -0.744 5.744 7 C -0.251 4.251 8 H 0.069 0.931 9 C -0.072 4.072 10 N -0.967 5.967 11 Si 0.974 3.026 12 H -0.286 1.286 13 H -0.290 1.290 14 H -0.272 1.272 15 N -0.702 5.702 16 C 0.601 3.399 17 O -0.571 6.571 18 C -0.044 4.044 19 C -0.198 4.198 20 C 0.000 4.000 21 N -0.271 5.271 22 C 0.139 3.861 23 C -0.159 4.159 24 C 0.064 3.936 25 O -0.395 6.395 26 C 0.066 3.934 27 C -0.158 4.158 28 N -0.276 5.276 29 H 0.082 0.918 30 H 0.051 0.949 31 H 0.067 0.933 32 H 0.087 0.913 33 H 0.076 0.924 34 H 0.015 0.985 35 H 0.009 0.991 36 H 0.376 0.624 37 H 0.253 0.747 38 H 0.410 0.590 39 H 0.166 0.834 40 H 0.219 0.781 41 H 0.107 0.893 42 H 0.098 0.902 43 H 0.090 0.910 44 H 0.063 0.937 45 H 0.121 0.879 46 H 0.064 0.936 47 H 0.116 0.884 48 H 0.079 0.921 49 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.888 -4.823 -28.920 29.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.045 3.955 3 H 0.092 0.908 4 C -0.156 4.156 5 C 0.028 3.972 6 N -0.387 5.387 7 C -0.382 4.382 8 H 0.087 0.913 9 C -0.265 4.265 10 N -0.617 5.617 11 Si 0.803 3.197 12 H -0.213 1.213 13 H -0.217 1.217 14 H -0.197 1.197 15 N -0.353 5.353 16 C 0.387 3.613 17 O -0.449 6.449 18 C -0.202 4.202 19 C -0.226 4.226 20 C -0.143 4.143 21 N -0.059 5.059 22 C 0.039 3.961 23 C -0.198 4.198 24 C -0.013 4.013 25 O -0.313 6.313 26 C -0.011 4.011 27 C -0.197 4.197 28 N -0.113 5.113 29 H 0.101 0.899 30 H 0.070 0.930 31 H 0.086 0.914 32 H 0.105 0.895 33 H 0.094 0.906 34 H 0.033 0.967 35 H 0.027 0.973 36 H 0.208 0.792 37 H 0.062 0.938 38 H 0.246 0.754 39 H 0.184 0.816 40 H 0.236 0.764 41 H 0.125 0.875 42 H 0.116 0.884 43 H 0.109 0.891 44 H 0.081 0.919 45 H 0.139 0.861 46 H 0.082 0.918 47 H 0.134 0.866 48 H 0.098 0.902 49 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -5.813 -5.091 -28.556 29.583 hybrid contribution 0.761 0.384 0.798 1.168 sum -5.052 -4.708 -27.758 28.604 Atomic orbital electron populations 1.22080 0.93233 1.02936 1.02752 1.20939 0.95166 0.96523 0.82835 0.90762 1.21897 0.94555 1.01665 0.97474 1.20730 0.93561 0.94229 0.88634 1.42538 1.04543 1.65325 1.26336 1.19589 0.85237 1.27936 1.05477 0.91312 1.25570 1.02184 1.01033 0.97693 1.69804 1.34652 1.41788 1.15490 0.85135 0.79911 0.76833 0.77854 1.21298 1.21657 1.19659 1.45981 1.65747 1.14567 1.08957 1.17168 0.76636 0.85350 0.82139 1.90739 1.52644 1.16224 1.85261 1.21912 1.10319 0.91642 0.96377 1.21992 1.07323 1.01840 0.91436 1.23280 1.04981 0.85404 1.00587 1.45973 1.44229 1.10656 1.05020 1.21924 0.96384 0.78808 0.98971 1.22634 0.97944 1.00952 0.98267 1.22708 0.88295 0.89991 1.00326 1.87968 1.27830 1.78325 1.37227 1.22663 0.91153 0.94215 0.93118 1.22599 0.97179 0.98266 1.01667 1.73485 1.16258 1.16847 1.04668 0.89927 0.93001 0.91373 0.89473 0.90566 0.96661 0.97306 0.79161 0.93806 0.75437 0.81630 0.76414 0.87531 0.88400 0.89110 0.91892 0.86089 0.91757 0.86630 0.90193 0.89765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.67 9.48 71.98 0.68 -2.98 16 2 C 0.15 4.39 2.57 44.99 0.12 4.51 16 3 H 0.07 2.44 7.58 -2.38 -0.02 2.42 16 4 C -0.12 -3.80 4.87 30.59 0.15 -3.65 16 5 C 0.15 6.57 6.15 86.38 0.53 7.10 16 6 N -0.74 -39.25 5.60 -343.44 -1.92 -41.18 16 7 C -0.25 -14.55 9.99 84.04 0.84 -13.72 16 8 H 0.07 3.91 7.83 -2.91 -0.02 3.88 16 9 C -0.07 -4.24 5.50 84.86 0.47 -3.77 16 10 N -0.97 -59.71 13.06 21.65 0.28 -59.42 16 11 Si 0.97 46.87 29.55 68.60 2.03 48.90 16 12 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 13 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 14 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 15 N -0.70 -20.98 4.53 -445.53 -2.02 -23.00 16 16 C 0.60 19.60 7.79 86.74 0.68 20.27 16 17 O -0.57 -21.50 16.59 -3.95 -0.07 -21.56 16 18 C -0.04 -1.25 7.13 42.46 0.30 -0.94 16 19 C -0.20 -4.54 10.81 22.41 0.24 -4.30 16 20 C 0.00 0.00 10.53 83.54 0.88 0.88 16 21 N -0.27 -5.06 3.23 -326.82 -1.05 -6.11 16 22 C 0.14 1.73 3.16 45.11 0.14 1.87 16 23 C -0.16 -1.23 5.09 30.68 0.16 -1.07 16 24 C 0.06 0.45 6.84 72.01 0.49 0.94 16 25 O -0.39 -4.31 10.76 -148.98 -1.60 -5.91 16 26 C 0.07 0.55 6.84 72.01 0.49 1.04 16 27 C -0.16 -1.61 5.75 30.68 0.18 -1.43 16 28 N -0.28 -7.15 11.67 -48.18 -0.56 -7.71 16 29 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 30 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.07 1.49 8.14 -2.38 -0.02 1.47 16 32 H 0.09 2.72 8.14 -2.38 -0.02 2.70 16 33 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 34 H 0.02 0.67 7.75 -2.39 -0.02 0.65 16 35 H 0.01 0.40 8.14 -2.38 -0.02 0.38 16 36 H 0.38 20.62 7.67 -92.70 -0.71 19.90 16 37 H 0.25 15.05 8.31 -92.71 -0.77 14.28 16 38 H 0.41 11.74 8.33 -92.71 -0.77 10.97 16 39 H 0.17 3.50 8.06 -2.91 -0.02 3.47 16 40 H 0.22 1.57 7.07 -2.91 -0.02 1.54 16 41 H 0.11 1.47 8.14 -2.38 -0.02 1.45 16 42 H 0.10 0.54 6.90 -2.38 -0.02 0.53 16 43 H 0.09 0.72 8.14 -2.38 -0.02 0.70 16 44 H 0.06 0.41 8.14 -2.38 -0.02 0.39 16 45 H 0.12 0.49 8.14 -2.39 -0.02 0.47 16 46 H 0.06 0.47 8.14 -2.39 -0.02 0.46 16 47 H 0.12 0.69 8.14 -2.39 -0.02 0.67 16 48 H 0.08 0.95 8.14 -2.39 -0.02 0.94 16 49 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 Total: -1.00 -76.35 402.31 0.90 -75.44 By element: Atomic # 1 Polarization: 36.33 SS G_CDS: -0.52 Total: 35.80 kcal Atomic # 6 Polarization: -1.60 SS G_CDS: 6.35 Total: 4.75 kcal Atomic # 7 Polarization: -132.14 SS G_CDS: -5.28 Total: -137.42 kcal Atomic # 8 Polarization: -25.81 SS G_CDS: -1.67 Total: -27.48 kcal Atomic # 14 Polarization: 46.87 SS G_CDS: 2.03 Total: 48.90 kcal Total: -76.35 0.90 -75.44 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753965840.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.604 kcal (2) G-P(sol) polarization free energy of solvation -76.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds