Wall clock time and date at job start Tue Mar 31 2020 20:06:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09009 * 109.46732 * 2 1 4 4 C 1.52991 * 109.47634 * 120.00537 * 2 1 3 5 5 C 1.53000 * 109.47071 * 294.99819 * 4 2 1 6 6 C 1.50698 * 109.47228 * 179.97438 * 5 4 2 7 7 C 1.38243 * 119.97828 * 269.72662 * 6 5 4 8 8 C 1.38201 * 120.02626 * 179.72412 * 7 6 5 9 9 C 1.38462 * 119.97285 * 0.57379 * 8 7 6 10 10 F 1.35098 * 120.02296 * 179.68310 * 9 8 7 11 11 C 1.38459 * 119.94922 * 359.70381 * 9 8 7 12 12 C 1.38196 * 119.97139 * 359.97438 * 11 9 8 13 13 C 1.50702 * 109.47017 * 240.00987 * 2 1 3 14 14 O 1.21283 * 119.99478 * 239.99664 * 13 2 1 15 15 N 1.34773 * 120.00430 * 59.99011 * 13 2 1 16 16 C 1.46506 * 119.99969 * 0.02562 * 15 13 2 17 17 C 1.46499 * 120.00036 * 179.72648 * 15 13 2 18 18 C 1.53001 * 109.47147 * 270.27655 * 17 15 13 19 19 C 1.53005 * 109.47315 * 179.97438 * 18 17 15 20 20 N 1.46499 * 109.47125 * 180.02562 * 19 18 17 21 21 C 1.36939 * 119.99558 * 180.02562 * 20 19 18 22 22 H 1.07999 * 120.00245 * 0.02562 * 21 20 19 23 23 C 1.38813 * 119.99610 * 179.97438 * 21 20 19 24 24 N 1.31616 * 120.00392 * 359.97438 * 23 21 20 25 25 Si 1.86799 * 119.99744 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.47402 * 359.97438 * 25 23 21 27 27 H 1.48504 * 109.47365 * 120.00177 * 25 23 21 28 28 H 1.48504 * 109.47041 * 239.99917 * 25 23 21 29 29 H 1.09009 * 109.46732 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46762 * 299.99064 * 1 2 3 31 31 H 1.08994 * 109.47722 * 60.00029 * 1 2 3 32 32 H 1.08998 * 109.47323 * 55.00242 * 4 2 1 33 33 H 1.09006 * 109.47524 * 175.00574 * 4 2 1 34 34 H 1.08998 * 109.47393 * 300.00380 * 5 4 2 35 35 H 1.09007 * 109.46792 * 60.00286 * 5 4 2 36 36 H 1.08003 * 119.98553 * 359.97438 * 7 6 5 37 37 H 1.08000 * 120.01360 * 180.25883 * 8 7 6 38 38 H 1.07998 * 120.01304 * 179.97438 * 11 9 8 39 39 H 1.08010 * 119.98505 * 180.02562 * 12 11 9 40 40 H 1.08999 * 109.46892 * 269.72362 * 16 15 13 41 41 H 1.09000 * 109.46803 * 29.71536 * 16 15 13 42 42 H 1.09000 * 109.47214 * 149.72329 * 16 15 13 43 43 H 1.08994 * 109.47173 * 30.28203 * 17 15 13 44 44 H 1.09005 * 109.47077 * 150.28374 * 17 15 13 45 45 H 1.09003 * 109.47272 * 300.00321 * 18 17 15 46 46 H 1.08997 * 109.47273 * 60.00010 * 18 17 15 47 47 H 1.08996 * 109.46592 * 300.00455 * 19 18 17 48 48 H 1.09003 * 109.46552 * 60.00048 * 19 18 17 49 49 H 0.96994 * 119.99756 * 0.02562 * 20 19 18 50 50 H 0.96994 * 120.00637 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 1.6354 0.0688 2.4952 6 6 2.1373 -0.6420 3.7256 7 6 1.3417 -1.5826 4.3529 8 6 1.8032 -2.2391 5.4780 9 6 3.0583 -1.9460 5.9839 10 9 3.5080 -2.5826 7.0874 11 6 3.8521 -0.9997 5.3581 12 6 3.3910 -0.3492 4.2293 13 6 2.0323 -0.7102 -1.2306 14 8 2.7296 -1.6963 -1.1194 15 7 1.7066 -0.2497 -2.4546 16 6 0.8646 0.9417 -2.5889 17 6 2.1999 -0.9367 -3.6509 18 6 3.5490 -0.3424 -4.0604 19 6 4.0645 -1.0603 -5.3094 20 7 5.3565 -0.4916 -5.7011 21 6 6.0141 -0.9785 -6.7992 22 1 5.5801 -1.7813 -7.3767 23 6 7.2381 -0.4393 -7.1708 24 7 7.7664 0.5401 -6.4680 25 14 8.1348 -1.1030 -8.6691 26 1 7.3353 -2.1943 -9.2814 27 1 8.3219 -0.0110 -9.6580 28 1 9.4605 -1.6316 -8.2587 29 1 -0.3633 -1.0278 0.0005 30 1 -0.3633 0.5137 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 1.6056 -1.7199 1.2949 33 1 3.1265 -0.7994 1.2054 34 1 2.0699 1.0673 2.4494 35 1 0.5491 0.1469 2.5390 36 1 0.3606 -1.8072 3.9611 37 1 1.1831 -2.9769 5.9654 38 1 4.8311 -0.7699 5.7521 39 1 4.0102 0.3887 3.7408 40 1 -0.1831 0.6436 -2.6270 41 1 1.0248 1.5980 -1.7336 42 1 1.1257 1.4696 -3.5061 43 1 2.3206 -1.9985 -3.4363 44 1 1.4850 -0.8093 -4.4638 45 1 3.4282 0.7194 -4.2750 46 1 4.2639 -0.4697 -3.2476 47 1 4.1853 -2.1219 -5.0943 48 1 3.3497 -0.9333 -6.1224 49 1 5.7461 0.2297 -5.1827 50 1 8.6215 0.9171 -6.7278 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754377078.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:06:16 Heat of formation + Delta-G solvation = -60.826375 kcal Electronic energy + Delta-G solvation = -27816.830709 eV Core-core repulsion = 23758.226567 eV Total energy + Delta-G solvation = -4058.604142 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -49.19315 -40.35465 -39.50588 -36.41619 -35.74748 -34.82394 -32.74266 -31.82631 -31.49948 -29.78452 -28.27712 -27.07979 -25.87086 -24.87702 -23.42632 -23.17659 -22.03588 -21.10069 -20.69989 -19.06448 -18.00982 -17.21819 -17.01079 -16.75837 -16.42803 -15.90066 -15.81789 -15.49015 -14.92757 -14.63907 -14.48961 -14.39561 -14.01430 -13.84666 -13.79982 -13.58617 -13.25570 -13.16742 -13.00907 -12.96953 -12.70723 -12.46083 -12.02550 -11.96187 -11.82669 -11.73361 -11.61578 -11.38016 -11.10137 -10.90817 -10.89918 -10.84455 -10.70714 -10.37715 -10.02503 -9.72848 -9.62056 -9.47617 -8.86967 -8.84443 -8.64922 -6.88452 -5.73286 -3.01833 0.77340 0.86517 2.63161 2.94744 3.21868 3.45551 3.50874 3.53438 3.92718 4.26446 4.28683 4.32389 4.52911 4.61554 4.62863 4.71902 4.83533 4.86125 4.89118 5.10122 5.10730 5.14365 5.16693 5.26626 5.32968 5.40237 5.46810 5.49467 5.53472 5.57011 5.59804 5.67379 5.72009 5.73769 5.76727 5.86986 5.92413 5.94575 6.09116 6.11629 6.20188 6.32732 6.41543 6.53453 6.55750 6.89105 6.91754 7.35819 7.73473 8.18271 8.45736 9.56569 10.15388 10.50015 11.49929 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.013186 B = 0.001800 C = 0.001639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2122.968555 B =15549.814902 C =17080.047913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.110 4.110 3 H 0.097 0.903 4 C -0.095 4.095 5 C -0.082 4.082 6 C -0.088 4.088 7 C -0.088 4.088 8 C -0.152 4.152 9 C 0.090 3.910 10 F -0.142 7.142 11 C -0.151 4.151 12 C -0.087 4.087 13 C 0.514 3.486 14 O -0.533 6.533 15 N -0.615 5.615 16 C 0.075 3.925 17 C 0.118 3.882 18 C -0.138 4.138 19 C 0.156 3.844 20 N -0.733 5.733 21 C -0.237 4.237 22 H 0.071 0.929 23 C -0.017 4.017 24 N -0.934 5.934 25 Si 0.908 3.092 26 H -0.280 1.280 27 H -0.292 1.292 28 H -0.291 1.291 29 H 0.060 0.940 30 H 0.068 0.932 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.077 0.923 36 H 0.132 0.868 37 H 0.134 0.866 38 H 0.135 0.865 39 H 0.134 0.866 40 H 0.058 0.942 41 H 0.072 0.928 42 H 0.073 0.927 43 H 0.083 0.917 44 H 0.076 0.924 45 H 0.061 0.939 46 H 0.065 0.935 47 H 0.020 0.980 48 H 0.018 0.982 49 H 0.383 0.617 50 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.599 2.024 24.018 31.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.131 4.131 3 H 0.115 0.885 4 C -0.133 4.133 5 C -0.119 4.119 6 C -0.088 4.088 7 C -0.106 4.106 8 C -0.171 4.171 9 C 0.071 3.929 10 F -0.121 7.121 11 C -0.169 4.169 12 C -0.105 4.105 13 C 0.301 3.699 14 O -0.409 6.409 15 N -0.348 5.348 16 C -0.068 4.068 17 C -0.004 4.004 18 C -0.177 4.177 19 C 0.028 3.972 20 N -0.377 5.377 21 C -0.369 4.369 22 H 0.089 0.911 23 C -0.213 4.213 24 N -0.583 5.583 25 Si 0.739 3.261 26 H -0.205 1.205 27 H -0.219 1.219 28 H -0.219 1.219 29 H 0.079 0.921 30 H 0.086 0.914 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.093 0.907 34 H 0.094 0.906 35 H 0.096 0.904 36 H 0.150 0.850 37 H 0.152 0.848 38 H 0.153 0.847 39 H 0.151 0.849 40 H 0.077 0.923 41 H 0.091 0.909 42 H 0.092 0.908 43 H 0.102 0.898 44 H 0.094 0.906 45 H 0.079 0.921 46 H 0.084 0.916 47 H 0.038 0.962 48 H 0.036 0.964 49 H 0.217 0.783 50 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -20.185 1.358 23.958 31.357 hybrid contribution 0.854 -0.104 -0.495 0.992 sum -19.331 1.254 23.463 30.427 Atomic orbital electron populations 1.22103 0.93103 1.03051 1.03288 1.21305 0.97576 1.00897 0.93308 0.88470 1.21390 1.02368 0.98901 0.90627 1.20708 1.01426 0.98624 0.91130 1.19970 0.94462 0.97401 0.96964 1.20927 1.00010 0.95263 0.94431 1.21147 0.95164 1.02320 0.98460 1.17748 0.94202 0.95243 0.85756 1.91498 1.89355 1.80530 1.50725 1.21176 1.00717 0.97532 0.97507 1.20982 0.95396 0.99220 0.94882 1.20645 0.80062 0.84694 0.84451 1.90730 1.37438 1.26399 1.86361 1.47892 1.51256 1.29417 1.06262 1.21965 0.94196 0.87337 1.03271 1.21488 0.95642 0.97733 0.85581 1.22049 0.96055 1.00235 0.99374 1.20545 0.88570 0.95523 0.92564 1.42359 1.19232 1.43123 1.33031 1.19304 1.00494 1.14074 1.03003 0.91077 1.24762 0.97983 0.98953 0.99560 1.69672 1.19418 1.28280 1.40970 0.86095 0.79652 0.77945 0.82387 1.20538 1.21887 1.21861 0.92135 0.91355 0.90994 0.91017 0.90658 0.90587 0.90429 0.85019 0.84830 0.84727 0.84850 0.92335 0.90914 0.90784 0.89832 0.90586 0.92063 0.91642 0.96226 0.96417 0.78344 0.93597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.92 8.58 37.16 0.32 -0.60 16 2 C -0.11 -0.90 1.92 -91.77 -0.18 -1.08 16 3 H 0.10 0.67 7.40 -51.92 -0.38 0.28 16 4 C -0.09 -0.82 4.01 -26.74 -0.11 -0.92 16 5 C -0.08 -0.49 5.10 -27.88 -0.14 -0.64 16 6 C -0.09 -0.65 5.13 -104.62 -0.54 -1.19 16 7 C -0.09 -0.63 9.70 -39.59 -0.38 -1.01 16 8 C -0.15 -1.19 10.03 -39.51 -0.40 -1.59 16 9 C 0.09 0.82 7.30 -39.42 -0.29 0.53 16 10 F -0.14 -1.44 17.27 2.25 0.04 -1.40 16 11 C -0.15 -1.25 10.03 -39.52 -0.40 -1.64 16 12 C -0.09 -0.67 9.70 -39.59 -0.38 -1.05 16 13 C 0.51 6.55 7.08 -10.99 -0.08 6.47 16 14 O -0.53 -9.21 15.50 5.55 0.09 -9.12 16 15 N -0.62 -7.12 2.87 -181.57 -0.52 -7.64 16 16 C 0.08 0.56 8.80 59.85 0.53 1.09 16 17 C 0.12 1.62 5.40 -4.04 -0.02 1.60 16 18 C -0.14 -2.37 5.65 -26.73 -0.15 -2.52 16 19 C 0.16 3.29 6.26 -4.04 -0.03 3.26 16 20 N -0.73 -19.54 5.60 -59.91 -0.34 -19.88 16 21 C -0.24 -6.91 9.99 -15.06 -0.15 -7.06 16 22 H 0.07 2.00 7.83 -52.49 -0.41 1.59 16 23 C -0.02 -0.50 5.50 -17.43 -0.10 -0.60 16 24 N -0.93 -29.08 13.06 55.49 0.72 -28.35 16 25 Si 0.91 22.95 29.55 -169.99 -5.02 17.92 16 26 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 27 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 28 H -0.29 -7.40 7.11 56.52 0.40 -6.99 16 29 H 0.06 0.41 8.14 -51.92 -0.42 -0.02 16 30 H 0.07 0.28 6.56 -51.93 -0.34 -0.06 16 31 H 0.07 0.36 4.54 -51.93 -0.24 0.12 16 32 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.07 0.81 7.96 -51.93 -0.41 0.40 16 34 H 0.08 0.40 8.09 -51.93 -0.42 -0.02 16 35 H 0.08 0.36 6.51 -51.93 -0.34 0.02 16 36 H 0.13 0.67 8.06 -52.48 -0.42 0.25 16 37 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 38 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 39 H 0.13 0.83 8.06 -52.48 -0.42 0.40 16 40 H 0.06 0.34 6.97 -51.93 -0.36 -0.03 16 41 H 0.07 0.42 5.99 -51.93 -0.31 0.11 16 42 H 0.07 0.56 8.07 -51.93 -0.42 0.14 16 43 H 0.08 1.27 7.43 -51.93 -0.39 0.89 16 44 H 0.08 0.88 8.07 -51.93 -0.42 0.46 16 45 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 46 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 47 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 48 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 49 H 0.38 10.71 7.67 -40.82 -0.31 10.40 16 50 H 0.25 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 407.83 15.07 6.15 6.15 Total: -1.00 -35.43 407.83 -9.49 -44.92 By element: Atomic # 1 Polarization: 12.49 SS G_CDS: -8.12 Total: 4.37 kcal Atomic # 6 Polarization: -4.48 SS G_CDS: -2.49 Total: -6.96 kcal Atomic # 7 Polarization: -55.74 SS G_CDS: -0.13 Total: -55.87 kcal Atomic # 8 Polarization: -9.21 SS G_CDS: 0.09 Total: -9.12 kcal Atomic # 9 Polarization: -1.44 SS G_CDS: 0.04 Total: -1.40 kcal Atomic # 14 Polarization: 22.95 SS G_CDS: -5.02 Total: 17.92 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -35.43 -9.49 -44.92 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754377078.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.909 kcal (2) G-P(sol) polarization free energy of solvation -35.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds