Wall clock time and date at job start Tue Mar 31 2020 20:06:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09009 * 109.46732 * 2 1 4 4 C 1.52991 * 109.47634 * 120.00537 * 2 1 3 5 5 C 1.53000 * 109.47071 * 294.99819 * 4 2 1 6 6 C 1.50698 * 109.47228 * 179.97438 * 5 4 2 7 7 C 1.38243 * 119.97828 * 269.72662 * 6 5 4 8 8 C 1.38201 * 120.02626 * 179.72412 * 7 6 5 9 9 C 1.38462 * 119.97285 * 0.57379 * 8 7 6 10 10 F 1.35098 * 120.02296 * 179.68310 * 9 8 7 11 11 C 1.38459 * 119.94922 * 359.70381 * 9 8 7 12 12 C 1.38196 * 119.97139 * 359.97438 * 11 9 8 13 13 C 1.50702 * 109.47017 * 240.00987 * 2 1 3 14 14 O 1.21283 * 119.99478 * 239.99664 * 13 2 1 15 15 N 1.34773 * 120.00430 * 59.99011 * 13 2 1 16 16 C 1.46506 * 119.99969 * 0.02562 * 15 13 2 17 17 C 1.46499 * 120.00036 * 179.72648 * 15 13 2 18 18 C 1.53001 * 109.47147 * 270.27655 * 17 15 13 19 19 C 1.53005 * 109.47315 * 179.97438 * 18 17 15 20 20 N 1.46499 * 109.47125 * 180.02562 * 19 18 17 21 21 C 1.36939 * 119.99558 * 180.02562 * 20 19 18 22 22 H 1.07999 * 120.00245 * 0.02562 * 21 20 19 23 23 C 1.38813 * 119.99610 * 179.97438 * 21 20 19 24 24 N 1.31616 * 120.00392 * 359.97438 * 23 21 20 25 25 Si 1.86799 * 119.99744 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.47402 * 359.97438 * 25 23 21 27 27 H 1.48504 * 109.47365 * 120.00177 * 25 23 21 28 28 H 1.48504 * 109.47041 * 239.99917 * 25 23 21 29 29 H 1.09009 * 109.46732 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46762 * 299.99064 * 1 2 3 31 31 H 1.08994 * 109.47722 * 60.00029 * 1 2 3 32 32 H 1.08998 * 109.47323 * 55.00242 * 4 2 1 33 33 H 1.09006 * 109.47524 * 175.00574 * 4 2 1 34 34 H 1.08998 * 109.47393 * 300.00380 * 5 4 2 35 35 H 1.09007 * 109.46792 * 60.00286 * 5 4 2 36 36 H 1.08003 * 119.98553 * 359.97438 * 7 6 5 37 37 H 1.08000 * 120.01360 * 180.25883 * 8 7 6 38 38 H 1.07998 * 120.01304 * 179.97438 * 11 9 8 39 39 H 1.08010 * 119.98505 * 180.02562 * 12 11 9 40 40 H 1.08999 * 109.46892 * 269.72362 * 16 15 13 41 41 H 1.09000 * 109.46803 * 29.71536 * 16 15 13 42 42 H 1.09000 * 109.47214 * 149.72329 * 16 15 13 43 43 H 1.08994 * 109.47173 * 30.28203 * 17 15 13 44 44 H 1.09005 * 109.47077 * 150.28374 * 17 15 13 45 45 H 1.09003 * 109.47272 * 300.00321 * 18 17 15 46 46 H 1.08997 * 109.47273 * 60.00010 * 18 17 15 47 47 H 1.08996 * 109.46592 * 300.00455 * 19 18 17 48 48 H 1.09003 * 109.46552 * 60.00048 * 19 18 17 49 49 H 0.96994 * 119.99756 * 0.02562 * 20 19 18 50 50 H 0.96994 * 120.00637 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 1.6354 0.0688 2.4952 6 6 2.1373 -0.6420 3.7256 7 6 1.3417 -1.5826 4.3529 8 6 1.8032 -2.2391 5.4780 9 6 3.0583 -1.9460 5.9839 10 9 3.5080 -2.5826 7.0874 11 6 3.8521 -0.9997 5.3581 12 6 3.3910 -0.3492 4.2293 13 6 2.0323 -0.7102 -1.2306 14 8 2.7296 -1.6963 -1.1194 15 7 1.7066 -0.2497 -2.4546 16 6 0.8646 0.9417 -2.5889 17 6 2.1999 -0.9367 -3.6509 18 6 3.5490 -0.3424 -4.0604 19 6 4.0645 -1.0603 -5.3094 20 7 5.3565 -0.4916 -5.7011 21 6 6.0141 -0.9785 -6.7992 22 1 5.5801 -1.7813 -7.3767 23 6 7.2381 -0.4393 -7.1708 24 7 7.7664 0.5401 -6.4680 25 14 8.1348 -1.1030 -8.6691 26 1 7.3353 -2.1943 -9.2814 27 1 8.3219 -0.0110 -9.6580 28 1 9.4605 -1.6316 -8.2587 29 1 -0.3633 -1.0278 0.0005 30 1 -0.3633 0.5137 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 1.6056 -1.7199 1.2949 33 1 3.1265 -0.7994 1.2054 34 1 2.0699 1.0673 2.4494 35 1 0.5491 0.1469 2.5390 36 1 0.3606 -1.8072 3.9611 37 1 1.1831 -2.9769 5.9654 38 1 4.8311 -0.7699 5.7521 39 1 4.0102 0.3887 3.7408 40 1 -0.1831 0.6436 -2.6270 41 1 1.0248 1.5980 -1.7336 42 1 1.1257 1.4696 -3.5061 43 1 2.3206 -1.9985 -3.4363 44 1 1.4850 -0.8093 -4.4638 45 1 3.4282 0.7194 -4.2750 46 1 4.2639 -0.4697 -3.2476 47 1 4.1853 -2.1219 -5.0943 48 1 3.3497 -0.9333 -6.1224 49 1 5.7461 0.2297 -5.1827 50 1 8.6215 0.9171 -6.7278 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754377078.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:06:15 Heat of formation + Delta-G solvation = -81.458542 kcal Electronic energy + Delta-G solvation = -27817.725386 eV Core-core repulsion = 23758.226567 eV Total energy + Delta-G solvation = -4059.498820 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -49.90810 -41.25274 -40.11481 -37.64736 -36.56549 -36.41028 -34.16133 -32.95209 -32.07024 -31.41494 -28.97551 -27.88559 -27.12754 -25.80957 -24.74818 -24.00029 -23.08105 -22.39315 -21.53389 -19.93161 -19.17993 -18.65340 -18.05189 -17.39114 -17.38394 -16.68370 -16.61169 -16.54135 -16.24725 -15.88989 -15.63617 -15.38198 -15.13910 -14.94632 -14.61879 -14.45777 -14.37408 -14.22698 -13.82824 -13.71059 -13.49564 -13.45530 -13.23704 -12.99861 -12.80946 -12.72911 -12.47353 -12.40632 -12.39095 -12.21591 -12.04890 -11.96609 -11.84035 -11.81466 -11.64737 -11.49631 -10.98274 -10.63266 -10.05601 -9.63010 -9.48961 -9.05251 -7.98685 -5.28840 0.15630 0.28787 1.45245 1.47221 1.57439 1.68125 2.07155 2.54016 2.61782 3.31112 3.34718 3.55644 3.69355 3.77663 3.85652 3.96623 4.02158 4.03284 4.16697 4.24041 4.31411 4.34022 4.36350 4.52013 4.52258 4.56879 4.59346 4.66307 4.70706 4.75664 4.82581 4.87888 4.92512 4.95896 5.04195 5.09320 5.12988 5.15651 5.17975 5.27418 5.28518 5.29725 5.41091 5.45970 5.47776 5.58983 5.64641 5.96002 6.23605 6.46576 7.23759 7.28970 8.03933 8.27641 9.25388 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.013186 B = 0.001800 C = 0.001639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2122.968555 B =15549.814902 C =17080.047913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.101 4.101 3 H 0.119 0.881 4 C -0.090 4.090 5 C -0.072 4.072 6 C -0.094 4.094 7 C -0.091 4.091 8 C -0.158 4.158 9 C 0.064 3.936 10 F -0.154 7.154 11 C -0.162 4.162 12 C -0.097 4.097 13 C 0.502 3.498 14 O -0.592 6.592 15 N -0.614 5.614 16 C 0.066 3.934 17 C 0.126 3.874 18 C -0.120 4.120 19 C 0.154 3.846 20 N -0.749 5.749 21 C -0.249 4.249 22 H 0.078 0.922 23 C -0.080 4.080 24 N -0.971 5.971 25 Si 0.979 3.021 26 H -0.265 1.265 27 H -0.289 1.289 28 H -0.293 1.293 29 H 0.049 0.951 30 H 0.095 0.905 31 H 0.085 0.915 32 H 0.055 0.945 33 H 0.043 0.957 34 H 0.090 0.910 35 H 0.102 0.898 36 H 0.156 0.844 37 H 0.148 0.852 38 H 0.142 0.858 39 H 0.145 0.855 40 H 0.084 0.916 41 H 0.095 0.905 42 H 0.075 0.925 43 H 0.062 0.938 44 H 0.105 0.895 45 H 0.068 0.932 46 H 0.034 0.966 47 H 0.011 0.989 48 H 0.035 0.965 49 H 0.372 0.628 50 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.244 3.172 23.504 33.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.122 4.122 3 H 0.137 0.863 4 C -0.128 4.128 5 C -0.109 4.109 6 C -0.094 4.094 7 C -0.108 4.108 8 C -0.177 4.177 9 C 0.045 3.955 10 F -0.133 7.133 11 C -0.180 4.180 12 C -0.115 4.115 13 C 0.292 3.708 14 O -0.472 6.472 15 N -0.346 5.346 16 C -0.075 4.075 17 C 0.002 3.998 18 C -0.159 4.159 19 C 0.027 3.973 20 N -0.392 5.392 21 C -0.381 4.381 22 H 0.096 0.904 23 C -0.272 4.272 24 N -0.622 5.622 25 Si 0.807 3.193 26 H -0.189 1.189 27 H -0.215 1.215 28 H -0.221 1.221 29 H 0.068 0.932 30 H 0.114 0.886 31 H 0.104 0.896 32 H 0.074 0.926 33 H 0.062 0.938 34 H 0.109 0.891 35 H 0.120 0.880 36 H 0.173 0.827 37 H 0.165 0.835 38 H 0.160 0.840 39 H 0.163 0.837 40 H 0.102 0.898 41 H 0.113 0.887 42 H 0.094 0.906 43 H 0.081 0.919 44 H 0.123 0.877 45 H 0.087 0.913 46 H 0.053 0.947 47 H 0.029 0.971 48 H 0.053 0.947 49 H 0.204 0.796 50 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -22.898 2.517 23.442 32.866 hybrid contribution 1.639 -0.478 -0.335 1.740 sum -21.259 2.039 23.108 31.465 Atomic orbital electron populations 1.22119 0.90532 1.03033 1.05329 1.21349 0.99476 1.00950 0.90413 0.86313 1.21297 1.00316 0.98841 0.92373 1.20685 1.02944 0.98447 0.88782 1.20239 0.94342 0.97441 0.97374 1.21243 1.00973 0.94678 0.93936 1.21398 0.94850 1.02629 0.98790 1.18056 0.95219 0.96140 0.86075 1.91461 1.89588 1.80858 1.51357 1.21362 1.01158 0.97618 0.97897 1.21227 0.95956 0.99528 0.94772 1.21593 0.79096 0.84187 0.85947 1.90703 1.40105 1.29142 1.87245 1.48008 1.51100 1.30310 1.05183 1.22311 0.94752 0.85959 1.04484 1.21273 0.94441 0.96571 0.87524 1.21847 0.97204 1.00388 0.96441 1.20713 0.86757 0.95147 0.94667 1.42609 1.21003 1.43017 1.32523 1.19729 1.00884 1.13936 1.03528 0.90446 1.25673 0.99029 0.99586 1.02868 1.69832 1.19754 1.29771 1.42846 0.84992 0.78014 0.77601 0.78646 1.18892 1.21549 1.22065 0.93205 0.88632 0.89635 0.92617 0.93761 0.89147 0.87956 0.82684 0.83465 0.84047 0.83690 0.89753 0.88674 0.90579 0.91926 0.87660 0.91306 0.94671 0.97053 0.94747 0.79646 0.93890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 8.58 71.98 0.62 -0.58 16 2 C -0.10 -1.45 1.92 -11.54 -0.02 -1.47 16 3 H 0.12 1.22 7.40 -2.38 -0.02 1.21 16 4 C -0.09 -1.47 4.01 30.59 0.12 -1.35 16 5 C -0.07 -0.68 5.10 29.85 0.15 -0.53 16 6 C -0.09 -1.27 5.13 -19.86 -0.10 -1.37 16 7 C -0.09 -1.16 9.70 22.26 0.22 -0.94 16 8 C -0.16 -2.40 10.03 22.31 0.22 -2.18 16 9 C 0.06 1.20 7.30 22.38 0.16 1.36 16 10 F -0.15 -3.24 17.27 44.97 0.78 -2.47 16 11 C -0.16 -2.74 10.03 22.31 0.22 -2.52 16 12 C -0.10 -1.46 9.70 22.26 0.22 -1.24 16 13 C 0.50 12.53 7.08 87.66 0.62 13.15 16 14 O -0.59 -21.35 15.50 -3.04 -0.05 -21.39 16 15 N -0.61 -13.24 2.87 -846.75 -2.43 -15.67 16 16 C 0.07 0.75 8.80 127.77 1.12 1.88 16 17 C 0.13 3.34 5.40 86.38 0.47 3.80 16 18 C -0.12 -4.12 5.65 30.60 0.17 -3.95 16 19 C 0.15 6.50 6.26 86.38 0.54 7.04 16 20 N -0.75 -40.48 5.60 -343.45 -1.92 -42.41 16 21 C -0.25 -14.55 9.99 84.03 0.84 -13.71 16 22 H 0.08 4.32 7.83 -2.91 -0.02 4.30 16 23 C -0.08 -4.73 5.50 84.86 0.47 -4.27 16 24 N -0.97 -61.33 13.06 21.65 0.28 -61.05 16 25 Si 0.98 47.29 29.55 68.60 2.03 49.31 16 26 H -0.26 -11.97 7.11 99.48 0.71 -11.26 16 27 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 28 H -0.29 -14.18 7.11 99.48 0.71 -13.47 16 29 H 0.05 0.53 8.14 -2.38 -0.02 0.51 16 30 H 0.09 0.28 6.56 -2.39 -0.02 0.26 16 31 H 0.09 0.45 4.54 -2.39 -0.01 0.44 16 32 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.04 0.99 7.96 -2.38 -0.02 0.97 16 34 H 0.09 0.65 8.09 -2.39 -0.02 0.63 16 35 H 0.10 0.51 6.51 -2.38 -0.02 0.49 16 36 H 0.16 1.18 8.06 -2.91 -0.02 1.15 16 37 H 0.15 1.70 8.06 -2.91 -0.02 1.68 16 38 H 0.14 2.03 8.06 -2.91 -0.02 2.01 16 39 H 0.15 1.72 8.06 -2.91 -0.02 1.70 16 40 H 0.08 0.58 6.97 -2.39 -0.02 0.56 16 41 H 0.09 0.68 5.99 -2.39 -0.01 0.66 16 42 H 0.08 0.88 8.07 -2.39 -0.02 0.86 16 43 H 0.06 1.94 7.43 -2.39 -0.02 1.93 16 44 H 0.11 2.18 8.07 -2.38 -0.02 2.17 16 45 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 46 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 47 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 48 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 49 H 0.37 21.36 7.67 -92.71 -0.71 20.65 16 50 H 0.25 15.29 8.31 -92.71 -0.77 14.52 16 Total: -1.00 -80.04 407.83 4.95 -75.09 By element: Atomic # 1 Polarization: 25.23 SS G_CDS: 0.22 Total: 25.45 kcal Atomic # 6 Polarization: -12.91 SS G_CDS: 6.04 Total: -6.86 kcal Atomic # 7 Polarization: -115.06 SS G_CDS: -4.07 Total: -119.13 kcal Atomic # 8 Polarization: -21.35 SS G_CDS: -0.05 Total: -21.39 kcal Atomic # 9 Polarization: -3.24 SS G_CDS: 0.78 Total: -2.47 kcal Atomic # 14 Polarization: 47.29 SS G_CDS: 2.03 Total: 49.31 kcal Total: -80.04 4.95 -75.09 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754377078.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.365 kcal (2) G-P(sol) polarization free energy of solvation -80.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds