Wall clock time and date at job start Tue Mar 31 2020 19:55:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.46888 * 2 1 4 4 C 1.52999 * 109.46918 * 240.00558 * 2 1 3 5 5 C 1.50702 * 109.47228 * 64.99718 * 4 2 1 6 6 C 1.38224 * 120.01424 * 99.99567 * 5 4 2 7 7 C 1.38215 * 120.02910 * 180.02562 * 6 5 4 8 8 C 1.38264 * 120.05077 * 359.97438 * 7 6 5 9 9 C 1.38170 * 120.02695 * 0.02562 * 8 7 6 10 10 C 1.38435 * 120.01593 * 280.27689 * 5 4 2 11 11 F 1.35102 * 120.02613 * 359.97438 * 10 5 4 12 12 C 1.50691 * 109.47264 * 120.00331 * 2 1 3 13 13 O 1.21286 * 119.99858 * 119.99743 * 12 2 1 14 14 N 1.34780 * 120.00316 * 299.99957 * 12 2 1 15 15 C 1.46494 * 119.99840 * 0.02562 * 14 12 2 16 16 C 1.46504 * 120.00176 * 179.97438 * 14 12 2 17 17 C 1.53000 * 109.47160 * 90.00012 * 16 14 12 18 18 C 1.52991 * 109.47028 * 180.02562 * 17 16 14 19 19 N 1.46508 * 109.47107 * 180.02562 * 18 17 16 20 20 C 1.46494 * 119.99932 * 89.99854 * 19 18 17 21 21 C 1.36936 * 119.99953 * 269.99938 * 19 18 17 22 22 H 1.08007 * 119.99710 * 23.04693 * 21 19 18 23 23 C 1.38809 * 120.00151 * 203.04078 * 21 19 18 24 24 N 1.31619 * 119.99544 * 12.94416 * 23 21 19 25 25 Si 1.86800 * 120.00221 * 192.93769 * 23 21 19 26 26 H 1.48499 * 109.46950 * 0.02562 * 25 23 21 27 27 H 1.48503 * 109.46805 * 120.00322 * 25 23 21 28 28 H 1.48499 * 109.47398 * 240.00290 * 25 23 21 29 29 H 1.09008 * 109.47151 * 299.99332 * 1 2 3 30 30 H 1.08997 * 109.47358 * 59.99274 * 1 2 3 31 31 H 1.08999 * 109.47043 * 179.97438 * 1 2 3 32 32 H 1.08993 * 109.47094 * 304.99947 * 4 2 1 33 33 H 1.09004 * 109.47270 * 184.99376 * 4 2 1 34 34 H 1.08008 * 119.98587 * 0.02562 * 6 5 4 35 35 H 1.08002 * 119.97376 * 180.02562 * 7 6 5 36 36 H 1.07998 * 119.98699 * 180.02562 * 8 7 6 37 37 H 1.07998 * 120.01682 * 180.02562 * 9 8 7 38 38 H 1.09002 * 109.47549 * 90.00014 * 15 14 12 39 39 H 1.09000 * 109.47278 * 210.00269 * 15 14 12 40 40 H 1.09006 * 109.46992 * 329.99765 * 15 14 12 41 41 H 1.08994 * 109.46918 * 210.00298 * 16 14 12 42 42 H 1.09004 * 109.46744 * 330.00256 * 16 14 12 43 43 H 1.09003 * 109.46653 * 300.00142 * 17 16 14 44 44 H 1.09000 * 109.47091 * 59.99703 * 17 16 14 45 45 H 1.08995 * 109.47646 * 299.99913 * 18 17 16 46 46 H 1.09008 * 109.47283 * 60.00145 * 18 17 16 47 47 H 1.09007 * 109.47033 * 95.12344 * 20 19 18 48 48 H 1.08998 * 109.47025 * 215.12504 * 20 19 18 49 49 H 1.09000 * 109.47010 * 335.12444 * 20 19 18 50 50 H 0.97002 * 119.99477 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7211 -1.2493 5 6 1.6412 0.0573 -2.4766 6 6 2.5583 0.8820 -3.1005 7 6 2.1928 1.5965 -4.2258 8 6 0.9097 1.4867 -4.7291 9 6 -0.0089 0.6629 -4.1072 10 6 0.3545 -0.0490 -2.9763 11 9 -0.5443 -0.8508 -2.3644 12 6 2.0323 -0.7104 1.2303 13 8 2.7296 -1.6966 1.1190 14 7 1.7068 -0.2501 2.4545 15 6 0.8641 0.9406 2.5891 16 6 2.1947 -0.9411 3.6507 17 6 3.5427 -0.3493 4.0673 18 6 4.0525 -1.0714 5.3161 19 7 5.3430 -0.5043 5.7154 20 6 5.3900 0.6244 6.6481 21 6 6.5053 -1.0294 5.2169 22 1 6.4946 -1.5783 4.2868 23 6 7.6973 -0.8561 5.9069 24 7 7.6814 -0.4187 7.1482 25 14 9.3236 -1.2441 5.0739 26 1 9.0702 -1.7159 3.6889 27 1 10.1634 -0.0199 5.0335 28 1 10.0302 -2.3041 5.8369 29 1 -0.3634 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6053 -1.7196 -1.2953 33 1 3.1263 -0.7993 -1.2058 34 1 3.5610 0.9683 -2.7084 35 1 2.9102 2.2403 -4.7128 36 1 0.6253 2.0451 -5.6087 37 1 -1.0109 0.5769 -4.5008 38 1 -0.1838 0.6424 2.6226 39 1 1.1219 1.4662 3.5085 40 1 1.0273 1.5995 1.7361 41 1 1.4767 -0.8156 4.4610 42 1 2.3155 -2.0024 3.4332 43 1 4.2607 -0.4749 3.2568 44 1 3.4220 0.7119 4.2847 45 1 3.3347 -0.9464 6.1267 46 1 4.1734 -2.1327 5.0983 47 1 5.5363 0.2520 7.6621 48 1 6.2161 1.2830 6.3801 49 1 4.4524 1.1779 6.5960 50 1 8.5144 -0.2980 7.6305 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755043425.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:55:54 Heat of formation + Delta-G solvation = -33.414138 kcal Electronic energy + Delta-G solvation = -29106.993468 eV Core-core repulsion = 25049.578010 eV Total energy + Delta-G solvation = -4057.415458 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -49.26204 -40.29938 -39.27851 -36.35335 -35.36721 -35.19388 -32.44277 -31.37341 -30.75667 -29.90635 -27.33737 -26.67172 -25.98490 -25.54243 -23.71993 -22.97991 -22.16175 -20.98587 -20.14364 -18.97337 -17.96483 -17.21071 -16.71346 -16.65824 -16.41869 -15.89288 -15.81033 -15.40552 -14.76995 -14.55701 -14.33201 -14.22135 -13.81885 -13.65216 -13.42241 -13.26891 -13.06696 -12.90567 -12.74686 -12.67581 -12.49019 -12.29293 -12.01059 -11.95219 -11.70005 -11.31192 -11.22537 -11.16742 -11.11730 -10.89780 -10.76669 -10.66338 -10.39337 -10.08891 -9.80457 -9.68160 -9.61479 -9.29729 -8.95898 -8.62561 -8.42021 -6.64879 -5.64765 -3.10915 0.79412 0.84302 2.71602 3.02874 3.25544 3.42827 3.49906 3.53708 3.93533 4.20809 4.38663 4.54033 4.57478 4.59571 4.73073 4.78745 4.90502 4.95262 4.99498 5.17520 5.22887 5.37882 5.43453 5.43482 5.48705 5.50461 5.55018 5.61094 5.63164 5.72277 5.81815 5.85075 5.94654 5.96603 6.03024 6.08476 6.12484 6.14172 6.22955 6.51738 6.54420 6.69321 6.79318 6.90318 7.09419 7.43205 7.45187 7.78366 7.89788 8.26553 8.48538 9.32428 9.96016 10.44818 11.40215 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.015492 B = 0.002319 C = 0.002123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1806.980007 B =12071.980107 C =13184.377001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.103 4.103 3 H 0.097 0.903 4 C -0.063 4.063 5 C -0.110 4.110 6 C -0.088 4.088 7 C -0.128 4.128 8 C -0.098 4.098 9 C -0.155 4.155 10 C 0.101 3.899 11 F -0.134 7.134 12 C 0.516 3.484 13 O -0.534 6.534 14 N -0.613 5.613 15 C 0.077 3.923 16 C 0.116 3.884 17 C -0.150 4.150 18 C 0.155 3.845 19 N -0.604 5.604 20 C 0.164 3.836 21 C -0.249 4.249 22 H 0.068 0.932 23 C -0.002 4.002 24 N -0.910 5.910 25 Si 0.903 3.097 26 H -0.278 1.278 27 H -0.290 1.290 28 H -0.290 1.290 29 H 0.069 0.931 30 H 0.067 0.933 31 H 0.063 0.937 32 H 0.083 0.917 33 H 0.088 0.912 34 H 0.134 0.866 35 H 0.129 0.871 36 H 0.130 0.870 37 H 0.133 0.867 38 H 0.058 0.942 39 H 0.073 0.927 40 H 0.070 0.930 41 H 0.071 0.929 42 H 0.081 0.919 43 H 0.063 0.937 44 H 0.051 0.949 45 H 0.034 0.966 46 H 0.047 0.953 47 H 0.030 0.970 48 H 0.039 0.961 49 H -0.004 1.004 50 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.804 6.731 -21.166 29.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.124 4.124 3 H 0.115 0.885 4 C -0.101 4.101 5 C -0.111 4.111 6 C -0.106 4.106 7 C -0.146 4.146 8 C -0.116 4.116 9 C -0.174 4.174 10 C 0.082 3.918 11 F -0.113 7.113 12 C 0.304 3.696 13 O -0.410 6.410 14 N -0.346 5.346 15 C -0.067 4.067 16 C -0.007 4.007 17 C -0.191 4.191 18 C 0.027 3.973 19 N -0.327 5.327 20 C 0.019 3.981 21 C -0.378 4.378 22 H 0.086 0.914 23 C -0.199 4.199 24 N -0.556 5.556 25 Si 0.733 3.267 26 H -0.203 1.203 27 H -0.217 1.217 28 H -0.217 1.217 29 H 0.088 0.912 30 H 0.086 0.914 31 H 0.082 0.918 32 H 0.102 0.898 33 H 0.107 0.893 34 H 0.152 0.848 35 H 0.147 0.853 36 H 0.148 0.852 37 H 0.151 0.849 38 H 0.076 0.924 39 H 0.091 0.909 40 H 0.089 0.911 41 H 0.090 0.910 42 H 0.099 0.901 43 H 0.082 0.918 44 H 0.070 0.930 45 H 0.052 0.948 46 H 0.066 0.934 47 H 0.049 0.951 48 H 0.057 0.943 49 H 0.014 0.986 50 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -19.322 6.199 -21.049 29.238 hybrid contribution 0.761 -0.077 -0.264 0.809 sum -18.561 6.122 -21.313 28.918 Atomic orbital electron populations 1.22308 0.92840 1.03333 1.03233 1.21244 0.97830 1.00689 0.92625 0.88530 1.20373 1.02818 0.98164 0.88705 1.20010 0.92480 0.99932 0.98667 1.21076 0.99483 0.94912 0.95113 1.21239 0.96632 1.00066 0.96682 1.21011 0.93140 0.97786 0.99656 1.21155 1.01355 0.99031 0.95829 1.17541 0.87130 0.93530 0.93646 1.91506 1.66557 1.71298 1.81907 1.20513 0.80081 0.84656 0.84381 1.90725 1.37504 1.26407 1.86352 1.47896 1.51212 1.29221 1.06309 1.21942 0.94178 0.87439 1.03108 1.21593 0.96206 0.97666 0.85190 1.22591 0.95047 1.00151 1.01308 1.20630 0.87864 0.95999 0.92784 1.43899 1.00787 1.34998 1.52974 1.20765 0.95013 0.88474 0.93816 1.19255 0.85346 1.30786 1.02446 0.91422 1.25020 0.98395 1.01237 0.95291 1.70084 1.25407 1.51319 1.08806 0.86198 0.84086 0.77494 0.78937 1.20260 1.21705 1.21743 0.91204 0.91376 0.91764 0.89831 0.89310 0.84799 0.85292 0.85169 0.84863 0.92395 0.90865 0.91095 0.91025 0.90059 0.91832 0.92989 0.94783 0.93439 0.95148 0.94267 0.98585 0.93934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.45 7.32 37.16 0.27 -1.18 16 2 C -0.10 -1.10 1.91 -91.78 -0.18 -1.27 16 3 H 0.10 0.92 7.40 -51.93 -0.38 0.53 16 4 C -0.06 -0.69 4.06 -27.88 -0.11 -0.81 16 5 C -0.11 -1.04 4.99 -104.55 -0.52 -1.56 16 6 C -0.09 -0.71 9.67 -39.59 -0.38 -1.09 16 7 C -0.13 -0.86 10.04 -39.58 -0.40 -1.25 16 8 C -0.10 -0.62 10.04 -39.60 -0.40 -1.01 16 9 C -0.15 -1.15 10.03 -39.52 -0.40 -1.54 16 10 C 0.10 0.93 5.86 -39.42 -0.23 0.70 16 11 F -0.13 -1.36 13.68 2.25 0.03 -1.33 16 12 C 0.52 7.44 7.08 -10.99 -0.08 7.36 16 13 O -0.53 -9.94 15.50 5.55 0.09 -9.85 16 14 N -0.61 -8.03 2.87 -181.57 -0.52 -8.56 16 15 C 0.08 0.69 8.80 59.84 0.53 1.22 16 16 C 0.12 1.72 5.41 -4.04 -0.02 1.70 16 17 C -0.15 -2.75 5.86 -26.74 -0.16 -2.91 16 18 C 0.16 3.31 5.64 -4.04 -0.02 3.29 16 19 N -0.60 -15.89 2.92 -181.12 -0.53 -16.42 16 20 C 0.16 4.17 8.98 59.84 0.54 4.71 16 21 C -0.25 -7.18 9.65 -15.06 -0.15 -7.32 16 22 H 0.07 1.96 7.86 -52.48 -0.41 1.54 16 23 C 0.00 -0.05 5.10 -17.43 -0.09 -0.14 16 24 N -0.91 -27.47 10.71 55.49 0.59 -26.87 16 25 Si 0.90 22.76 29.57 -169.99 -5.03 17.73 16 26 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 27 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 28 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 29 H 0.07 0.53 4.53 -51.92 -0.24 0.30 16 30 H 0.07 0.59 5.17 -51.93 -0.27 0.32 16 31 H 0.06 0.65 7.74 -51.93 -0.40 0.25 16 32 H 0.08 1.01 7.95 -51.93 -0.41 0.60 16 33 H 0.09 1.05 7.82 -51.93 -0.41 0.64 16 34 H 0.13 0.95 8.04 -52.48 -0.42 0.53 16 35 H 0.13 0.60 8.06 -52.49 -0.42 0.17 16 36 H 0.13 0.50 8.06 -52.49 -0.42 0.08 16 37 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16 38 H 0.06 0.42 6.95 -51.93 -0.36 0.06 16 39 H 0.07 0.64 8.07 -51.93 -0.42 0.22 16 40 H 0.07 0.54 6.01 -51.93 -0.31 0.23 16 41 H 0.07 0.89 8.07 -51.93 -0.42 0.48 16 42 H 0.08 1.33 7.42 -51.93 -0.39 0.95 16 43 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 44 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 45 H 0.03 0.66 8.07 -51.93 -0.42 0.24 16 46 H 0.05 1.04 8.04 -51.92 -0.42 0.62 16 47 H 0.03 0.83 7.34 -51.93 -0.38 0.45 16 48 H 0.04 1.06 7.34 -51.93 -0.38 0.68 16 49 H 0.00 -0.10 8.03 -51.93 -0.42 -0.51 16 50 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 397.65 15.07 5.99 5.99 Total: -1.00 -34.33 397.65 -9.27 -43.60 By element: Atomic # 1 Polarization: 4.93 SS G_CDS: -8.10 Total: -3.17 kcal Atomic # 6 Polarization: 0.67 SS G_CDS: -1.79 Total: -1.12 kcal Atomic # 7 Polarization: -51.39 SS G_CDS: -0.46 Total: -51.85 kcal Atomic # 8 Polarization: -9.94 SS G_CDS: 0.09 Total: -9.85 kcal Atomic # 9 Polarization: -1.36 SS G_CDS: 0.03 Total: -1.33 kcal Atomic # 14 Polarization: 22.76 SS G_CDS: -5.03 Total: 17.73 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -34.33 -9.27 -43.60 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755043425.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.184 kcal (2) G-P(sol) polarization free energy of solvation -34.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds