Wall clock time and date at job start Tue Mar 31 2020 19:55:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.46888 * 2 1 4 4 C 1.52999 * 109.46918 * 240.00558 * 2 1 3 5 5 C 1.50702 * 109.47228 * 64.99718 * 4 2 1 6 6 C 1.38224 * 120.01424 * 99.99567 * 5 4 2 7 7 C 1.38215 * 120.02910 * 180.02562 * 6 5 4 8 8 C 1.38264 * 120.05077 * 359.97438 * 7 6 5 9 9 C 1.38170 * 120.02695 * 0.02562 * 8 7 6 10 10 C 1.38435 * 120.01593 * 280.27689 * 5 4 2 11 11 F 1.35102 * 120.02613 * 359.97438 * 10 5 4 12 12 C 1.50691 * 109.47264 * 120.00331 * 2 1 3 13 13 O 1.21286 * 119.99858 * 119.99743 * 12 2 1 14 14 N 1.34780 * 120.00316 * 299.99957 * 12 2 1 15 15 C 1.46494 * 119.99840 * 0.02562 * 14 12 2 16 16 C 1.46504 * 120.00176 * 179.97438 * 14 12 2 17 17 C 1.53000 * 109.47160 * 90.00012 * 16 14 12 18 18 C 1.52991 * 109.47028 * 180.02562 * 17 16 14 19 19 N 1.46508 * 109.47107 * 180.02562 * 18 17 16 20 20 C 1.46494 * 119.99932 * 89.99854 * 19 18 17 21 21 C 1.36936 * 119.99953 * 269.99938 * 19 18 17 22 22 H 1.08007 * 119.99710 * 23.04693 * 21 19 18 23 23 C 1.38809 * 120.00151 * 203.04078 * 21 19 18 24 24 N 1.31619 * 119.99544 * 12.94416 * 23 21 19 25 25 Si 1.86800 * 120.00221 * 192.93769 * 23 21 19 26 26 H 1.48499 * 109.46950 * 0.02562 * 25 23 21 27 27 H 1.48503 * 109.46805 * 120.00322 * 25 23 21 28 28 H 1.48499 * 109.47398 * 240.00290 * 25 23 21 29 29 H 1.09008 * 109.47151 * 299.99332 * 1 2 3 30 30 H 1.08997 * 109.47358 * 59.99274 * 1 2 3 31 31 H 1.08999 * 109.47043 * 179.97438 * 1 2 3 32 32 H 1.08993 * 109.47094 * 304.99947 * 4 2 1 33 33 H 1.09004 * 109.47270 * 184.99376 * 4 2 1 34 34 H 1.08008 * 119.98587 * 0.02562 * 6 5 4 35 35 H 1.08002 * 119.97376 * 180.02562 * 7 6 5 36 36 H 1.07998 * 119.98699 * 180.02562 * 8 7 6 37 37 H 1.07998 * 120.01682 * 180.02562 * 9 8 7 38 38 H 1.09002 * 109.47549 * 90.00014 * 15 14 12 39 39 H 1.09000 * 109.47278 * 210.00269 * 15 14 12 40 40 H 1.09006 * 109.46992 * 329.99765 * 15 14 12 41 41 H 1.08994 * 109.46918 * 210.00298 * 16 14 12 42 42 H 1.09004 * 109.46744 * 330.00256 * 16 14 12 43 43 H 1.09003 * 109.46653 * 300.00142 * 17 16 14 44 44 H 1.09000 * 109.47091 * 59.99703 * 17 16 14 45 45 H 1.08995 * 109.47646 * 299.99913 * 18 17 16 46 46 H 1.09008 * 109.47283 * 60.00145 * 18 17 16 47 47 H 1.09007 * 109.47033 * 95.12344 * 20 19 18 48 48 H 1.08998 * 109.47025 * 215.12504 * 20 19 18 49 49 H 1.09000 * 109.47010 * 335.12444 * 20 19 18 50 50 H 0.97002 * 119.99477 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7211 -1.2493 5 6 1.6412 0.0573 -2.4766 6 6 2.5583 0.8820 -3.1005 7 6 2.1928 1.5965 -4.2258 8 6 0.9097 1.4867 -4.7291 9 6 -0.0089 0.6629 -4.1072 10 6 0.3545 -0.0490 -2.9763 11 9 -0.5443 -0.8508 -2.3644 12 6 2.0323 -0.7104 1.2303 13 8 2.7296 -1.6966 1.1190 14 7 1.7068 -0.2501 2.4545 15 6 0.8641 0.9406 2.5891 16 6 2.1947 -0.9411 3.6507 17 6 3.5427 -0.3493 4.0673 18 6 4.0525 -1.0714 5.3161 19 7 5.3430 -0.5043 5.7154 20 6 5.3900 0.6244 6.6481 21 6 6.5053 -1.0294 5.2169 22 1 6.4946 -1.5783 4.2868 23 6 7.6973 -0.8561 5.9069 24 7 7.6814 -0.4187 7.1482 25 14 9.3236 -1.2441 5.0739 26 1 9.0702 -1.7159 3.6889 27 1 10.1634 -0.0199 5.0335 28 1 10.0302 -2.3041 5.8369 29 1 -0.3634 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6053 -1.7196 -1.2953 33 1 3.1263 -0.7993 -1.2058 34 1 3.5610 0.9683 -2.7084 35 1 2.9102 2.2403 -4.7128 36 1 0.6253 2.0451 -5.6087 37 1 -1.0109 0.5769 -4.5008 38 1 -0.1838 0.6424 2.6226 39 1 1.1219 1.4662 3.5085 40 1 1.0273 1.5995 1.7361 41 1 1.4767 -0.8156 4.4610 42 1 2.3155 -2.0024 3.4332 43 1 4.2607 -0.4749 3.2568 44 1 3.4220 0.7119 4.2847 45 1 3.3347 -0.9464 6.1267 46 1 4.1734 -2.1327 5.0983 47 1 5.5363 0.2520 7.6621 48 1 6.2161 1.2830 6.3801 49 1 4.4524 1.1779 6.5960 50 1 8.5144 -0.2980 7.6305 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755043425.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:55:53 Heat of formation + Delta-G solvation = -52.133530 kcal Electronic energy + Delta-G solvation = -29107.805202 eV Core-core repulsion = 25049.578010 eV Total energy + Delta-G solvation = -4058.227192 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -49.95749 -41.33728 -39.94273 -37.99662 -36.76427 -36.17327 -34.09993 -32.48908 -31.61339 -31.16062 -28.29238 -27.94903 -27.48739 -27.09137 -24.86924 -23.71742 -23.35330 -22.10857 -21.71048 -20.01249 -18.78875 -18.62482 -18.06794 -17.50612 -17.34276 -16.98813 -16.60307 -16.51407 -16.39497 -15.83438 -15.45248 -15.24954 -15.03148 -14.75255 -14.62739 -14.44383 -14.32261 -14.05827 -13.84599 -13.59086 -13.47398 -13.32091 -13.06007 -12.95997 -12.86263 -12.75231 -12.58923 -12.53196 -12.52181 -12.26225 -12.09550 -12.01908 -11.96179 -11.89349 -11.82565 -11.43695 -10.76716 -10.66238 -9.89583 -9.68417 -9.57860 -8.77127 -7.85765 -5.34817 0.19994 0.27558 1.41406 1.42217 1.53989 1.60127 2.02713 2.48163 2.66289 3.26060 3.32251 3.37391 3.68526 3.74580 3.76195 3.90351 3.97973 4.07628 4.18395 4.20129 4.33955 4.36967 4.39921 4.45511 4.52428 4.60334 4.67057 4.68682 4.74302 4.75940 4.81585 4.85343 4.91942 4.94393 4.96969 5.08491 5.15158 5.24361 5.25313 5.25897 5.27898 5.45052 5.48351 5.51376 5.58467 5.60814 5.69487 5.98018 6.31198 6.40036 7.13531 7.16390 7.86425 8.28087 9.16835 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.015492 B = 0.002319 C = 0.002123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1806.980007 B =12071.980107 C =13184.377001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.093 4.093 3 H 0.114 0.886 4 C -0.059 4.059 5 C -0.123 4.123 6 C -0.099 4.099 7 C -0.126 4.126 8 C -0.092 4.092 9 C -0.156 4.156 10 C 0.082 3.918 11 F -0.145 7.145 12 C 0.507 3.493 13 O -0.588 6.588 14 N -0.613 5.613 15 C 0.067 3.933 16 C 0.124 3.876 17 C -0.128 4.128 18 C 0.152 3.848 19 N -0.623 5.623 20 C 0.178 3.822 21 C -0.261 4.261 22 H 0.057 0.943 23 C -0.054 4.054 24 N -0.937 5.937 25 Si 0.966 3.034 26 H -0.274 1.274 27 H -0.286 1.286 28 H -0.287 1.287 29 H 0.090 0.910 30 H 0.075 0.925 31 H 0.048 0.952 32 H 0.062 0.938 33 H 0.070 0.930 34 H 0.137 0.863 35 H 0.153 0.847 36 H 0.161 0.839 37 H 0.151 0.849 38 H 0.082 0.918 39 H 0.082 0.918 40 H 0.087 0.913 41 H 0.107 0.893 42 H 0.059 0.941 43 H 0.022 0.978 44 H 0.060 0.940 45 H 0.061 0.939 46 H 0.033 0.967 47 H 0.006 0.994 48 H 0.012 0.988 49 H 0.036 0.964 50 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.635 8.809 -22.750 32.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.114 4.114 3 H 0.132 0.868 4 C -0.096 4.096 5 C -0.124 4.124 6 C -0.117 4.117 7 C -0.144 4.144 8 C -0.110 4.110 9 C -0.175 4.175 10 C 0.063 3.937 11 F -0.124 7.124 12 C 0.296 3.704 13 O -0.468 6.468 14 N -0.344 5.344 15 C -0.074 4.074 16 C 0.000 4.000 17 C -0.169 4.169 18 C 0.026 3.974 19 N -0.347 5.347 20 C 0.033 3.967 21 C -0.391 4.391 22 H 0.075 0.925 23 C -0.249 4.249 24 N -0.584 5.584 25 Si 0.794 3.206 26 H -0.198 1.198 27 H -0.212 1.212 28 H -0.214 1.214 29 H 0.108 0.892 30 H 0.094 0.906 31 H 0.068 0.932 32 H 0.080 0.920 33 H 0.089 0.911 34 H 0.155 0.845 35 H 0.171 0.829 36 H 0.178 0.822 37 H 0.169 0.831 38 H 0.101 0.899 39 H 0.101 0.899 40 H 0.106 0.894 41 H 0.125 0.875 42 H 0.078 0.922 43 H 0.041 0.959 44 H 0.079 0.921 45 H 0.080 0.920 46 H 0.051 0.949 47 H 0.024 0.976 48 H 0.031 0.969 49 H 0.054 0.946 50 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -21.211 8.303 -22.642 32.117 hybrid contribution 1.274 -0.707 0.188 1.469 sum -19.936 7.596 -22.453 30.973 Atomic orbital electron populations 1.22255 0.91179 1.02811 1.04562 1.21229 0.98979 1.00722 0.90453 0.86791 1.20232 1.01505 0.97686 0.90226 1.19889 0.93227 1.00816 0.98493 1.21225 0.99463 0.95125 0.95839 1.21557 0.97416 0.99538 0.95842 1.21403 0.92543 0.96986 1.00046 1.21433 1.02527 0.98515 0.95000 1.17758 0.86959 0.94319 0.94664 1.91475 1.66833 1.71788 1.82270 1.21240 0.79231 0.84147 0.85743 1.90696 1.40000 1.28905 1.87191 1.47994 1.51030 1.30129 1.05254 1.22277 0.94689 0.86030 1.04425 1.21392 0.95177 0.96404 0.86997 1.22264 0.95948 1.00375 0.98311 1.20803 0.86545 0.95351 0.94730 1.44174 1.01796 1.35567 1.53126 1.20538 0.95947 0.88026 0.92212 1.19427 0.86889 1.30609 1.02190 0.92483 1.25764 1.01475 1.01658 0.95957 1.70226 1.25979 1.52353 1.09852 0.85217 0.80039 0.77281 0.78027 1.19850 1.21218 1.21419 0.89195 0.90600 0.93237 0.91950 0.91083 0.84510 0.82931 0.82154 0.83133 0.89938 0.89916 0.89419 0.87502 0.92211 0.95856 0.92098 0.92045 0.94868 0.97553 0.96938 0.94569 0.94139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.54 7.32 71.98 0.53 -2.01 16 2 C -0.09 -1.96 1.91 -11.54 -0.02 -1.98 16 3 H 0.11 2.01 7.40 -2.38 -0.02 1.99 16 4 C -0.06 -1.36 4.06 29.85 0.12 -1.24 16 5 C -0.12 -2.31 4.99 -19.82 -0.10 -2.40 16 6 C -0.10 -1.50 9.67 22.26 0.22 -1.29 16 7 C -0.13 -1.36 10.04 22.27 0.22 -1.14 16 8 C -0.09 -0.87 10.04 22.26 0.22 -0.65 16 9 C -0.16 -1.97 10.03 22.31 0.22 -1.74 16 10 C 0.08 1.45 5.86 22.38 0.13 1.58 16 11 F -0.14 -2.92 13.68 44.97 0.62 -2.30 16 12 C 0.51 14.82 7.08 87.65 0.62 15.44 16 13 O -0.59 -23.21 15.50 -3.05 -0.05 -23.26 16 14 N -0.61 -15.29 2.87 -846.75 -2.43 -17.72 16 15 C 0.07 0.99 8.80 127.77 1.12 2.11 16 16 C 0.12 3.55 5.41 86.38 0.47 4.01 16 17 C -0.13 -4.66 5.86 30.59 0.18 -4.48 16 18 C 0.15 6.45 5.64 86.37 0.49 6.94 16 19 N -0.62 -33.07 2.92 -726.94 -2.12 -35.19 16 20 C 0.18 9.02 8.98 127.77 1.15 10.17 16 21 C -0.26 -15.38 9.65 84.03 0.81 -14.57 16 22 H 0.06 3.41 7.86 -2.91 -0.02 3.39 16 23 C -0.05 -3.17 5.10 84.86 0.43 -2.74 16 24 N -0.94 -57.44 10.71 21.65 0.23 -57.21 16 25 Si 0.97 47.59 29.57 68.60 2.03 49.62 16 26 H -0.27 -13.16 7.11 99.48 0.71 -12.45 16 27 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 28 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 29 H 0.09 1.11 4.53 -2.38 -0.01 1.10 16 30 H 0.08 1.20 5.17 -2.39 -0.01 1.18 16 31 H 0.05 0.99 7.74 -2.39 -0.02 0.97 16 32 H 0.06 1.66 7.95 -2.39 -0.02 1.64 16 33 H 0.07 1.84 7.82 -2.38 -0.02 1.82 16 34 H 0.14 1.90 8.04 -2.91 -0.02 1.88 16 35 H 0.15 0.90 8.06 -2.91 -0.02 0.88 16 36 H 0.16 0.55 8.06 -2.91 -0.02 0.52 16 37 H 0.15 1.30 8.06 -2.91 -0.02 1.28 16 38 H 0.08 0.87 6.95 -2.39 -0.02 0.85 16 39 H 0.08 1.12 8.07 -2.39 -0.02 1.10 16 40 H 0.09 1.03 6.01 -2.38 -0.01 1.01 16 41 H 0.11 2.34 8.07 -2.39 -0.02 2.32 16 42 H 0.06 1.99 7.42 -2.39 -0.02 1.98 16 43 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 44 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 45 H 0.06 2.27 8.07 -2.39 -0.02 2.25 16 46 H 0.03 1.48 8.04 -2.38 -0.02 1.46 16 47 H 0.01 0.34 7.34 -2.38 -0.02 0.33 16 48 H 0.01 0.66 7.34 -2.39 -0.02 0.64 16 49 H 0.04 1.51 8.03 -2.39 -0.02 1.49 16 50 H 0.25 14.70 8.31 -92.71 -0.77 13.93 16 Total: -1.00 -77.71 397.65 6.00 -71.71 By element: Atomic # 1 Polarization: 7.42 SS G_CDS: 0.92 Total: 8.34 kcal Atomic # 6 Polarization: -0.80 SS G_CDS: 6.81 Total: 6.02 kcal Atomic # 7 Polarization: -105.80 SS G_CDS: -4.33 Total: -110.12 kcal Atomic # 8 Polarization: -23.21 SS G_CDS: -0.05 Total: -23.26 kcal Atomic # 9 Polarization: -2.92 SS G_CDS: 0.62 Total: -2.30 kcal Atomic # 14 Polarization: 47.59 SS G_CDS: 2.03 Total: 49.62 kcal Total: -77.71 6.00 -71.71 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755043425.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.574 kcal (2) G-P(sol) polarization free energy of solvation -77.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds