Wall clock time and date at job start Tue Mar 31 2020 19:21:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42902 * 114.00002 * 2 1 4 4 C 1.52999 * 109.47084 * 180.02562 * 3 2 1 5 5 C 1.52999 * 109.47348 * 180.02562 * 4 3 2 6 6 N 1.46502 * 109.47313 * 179.97438 * 5 4 3 7 7 C 1.34260 * 125.74888 * 124.71443 * 6 5 4 8 8 C 1.38045 * 107.41159 * 179.84751 * 7 6 5 9 9 C 1.47434 * 126.41533 * 180.12686 * 8 7 6 10 10 O 1.21604 * 119.99666 * 7.24869 * 9 8 7 11 11 N 1.34773 * 120.00216 * 187.25318 * 9 8 7 12 12 C 1.47420 * 125.64700 * 5.55328 * 11 9 8 13 13 C 1.55135 * 104.71961 * 155.82155 * 12 11 9 14 14 H 1.09003 * 111.22489 * 279.17476 * 13 12 11 15 15 N 1.46501 * 110.90572 * 155.28004 * 13 12 11 16 16 C 1.36934 * 120.00092 * 92.97389 * 15 13 12 17 17 H 1.07994 * 120.00398 * 0.02562 * 16 15 13 18 18 C 1.38819 * 119.99552 * 179.97438 * 16 15 13 19 19 N 1.31616 * 120.00144 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 119.99585 * 180.02562 * 18 16 15 21 21 H 1.48508 * 109.47266 * 90.00147 * 20 18 16 22 22 H 1.48503 * 109.46893 * 209.99866 * 20 18 16 23 23 H 1.48496 * 109.47440 * 329.99741 * 20 18 16 24 24 C 1.55153 * 101.48775 * 37.29466 * 13 12 11 25 25 H 1.09005 * 110.71808 * 82.69522 * 24 13 12 26 26 C 1.52991 * 110.87500 * 205.89833 * 24 13 12 27 27 C 1.47027 * 125.64743 * 185.86523 * 11 9 8 28 28 C 1.41286 * 107.17152 * 0.41652 * 8 7 6 29 29 N 1.30444 * 108.02613 * 359.74225 * 28 8 7 30 30 H 1.08994 * 109.46726 * 300.00097 * 1 2 3 31 31 H 1.09000 * 109.47061 * 59.99934 * 1 2 3 32 32 H 1.08995 * 109.47049 * 180.02562 * 1 2 3 33 33 H 1.08995 * 109.47053 * 60.00273 * 3 2 1 34 34 H 1.08994 * 109.47098 * 299.99664 * 3 2 1 35 35 H 1.09007 * 109.47189 * 299.99959 * 4 3 2 36 36 H 1.09005 * 109.47260 * 59.99466 * 4 3 2 37 37 H 1.08997 * 109.46772 * 300.00225 * 5 4 3 38 38 H 1.09000 * 109.46712 * 59.99737 * 5 4 3 39 39 H 1.08000 * 126.29432 * 0.02562 * 7 6 5 40 40 H 1.08994 * 110.37073 * 274.75020 * 12 11 9 41 41 H 1.09005 * 110.36934 * 37.07909 * 12 11 9 42 42 H 0.97003 * 119.99717 * 272.97605 * 15 13 12 43 43 H 0.97002 * 119.99495 * 179.97438 * 19 18 16 44 44 H 1.09001 * 109.47652 * 175.06867 * 26 24 13 45 45 H 1.09005 * 109.47227 * 295.07037 * 26 24 13 46 46 H 1.08997 * 109.47350 * 55.06159 * 26 24 13 47 47 H 1.08993 * 109.88067 * 300.43937 * 27 11 9 48 48 H 1.09003 * 109.87718 * 61.45313 * 27 11 9 49 49 H 1.08003 * 125.98556 * 179.72435 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 6 4.1578 2.5823 0.0000 6 7 5.6183 2.4666 0.0000 7 6 6.4493 3.0237 -0.8954 8 6 7.7362 2.6764 -0.5365 9 6 8.9750 3.0678 -1.2335 10 8 8.9314 3.8694 -2.1469 11 7 10.1558 2.5373 -0.8583 12 6 10.3397 1.4758 0.1480 13 6 11.6905 0.8097 -0.2241 14 1 11.5673 0.0952 -1.0380 15 7 12.2973 0.1694 0.9455 16 6 12.0611 -1.1551 1.2005 17 1 11.4279 -1.7278 0.5393 18 6 12.6366 -1.7619 2.3086 19 7 13.4096 -1.0643 3.1136 20 14 12.3149 -3.5689 2.6560 21 1 13.3465 -4.3946 1.9782 22 1 12.3723 -3.8092 4.1204 23 1 10.9705 -3.9395 2.1459 24 6 12.5238 2.0358 -0.6818 25 1 12.9562 2.5504 0.1764 26 6 13.6174 1.6152 -1.6656 27 6 11.4742 2.9259 -1.3802 28 6 7.6435 1.8699 0.6199 29 7 6.3819 1.7519 0.9296 30 1 -0.3632 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.6887 1.8463 0.8900 34 1 1.6887 1.8463 -0.8900 35 1 3.8575 0.6435 0.8892 36 1 3.8568 0.6438 -0.8908 37 1 3.8358 3.1238 -0.8895 38 1 3.8365 3.1227 0.8904 39 1 6.1636 3.6339 -1.7394 40 1 10.3889 1.9057 1.1483 41 1 9.5293 0.7494 0.0857 42 1 12.8664 0.6837 1.5393 43 1 13.8113 -1.4883 3.8881 44 1 14.1309 2.5012 -2.0389 45 1 14.3326 0.9673 -1.1586 46 1 13.1680 1.0770 -2.5002 47 1 11.5088 2.7642 -2.4575 48 1 11.6668 3.9752 -1.1565 49 1 8.4721 1.4282 1.1536 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755119829.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:21:22 Heat of formation + Delta-G solvation = 14.906166 kcal Electronic energy + Delta-G solvation = -28746.250909 eV Core-core repulsion = 24710.850738 eV Total energy + Delta-G solvation = -4035.400171 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.43421 -39.44799 -38.43491 -37.33794 -35.13449 -34.04254 -32.57313 -31.38939 -30.72857 -30.14970 -27.67069 -27.54161 -26.39920 -25.25778 -24.10932 -22.66015 -22.46179 -21.21341 -20.63507 -19.82009 -19.26849 -17.51090 -17.19158 -16.79046 -16.56809 -16.10471 -15.90906 -15.68432 -15.32570 -14.99776 -14.52304 -14.28675 -14.22256 -13.83083 -13.57713 -13.24313 -12.96127 -12.86748 -12.76723 -12.69386 -12.54246 -12.46783 -12.24608 -11.71949 -11.59160 -11.58266 -11.52979 -11.10344 -10.99549 -10.90263 -10.64419 -10.57985 -10.22401 -10.14988 -9.94671 -9.78462 -9.61494 -9.60063 -8.98927 -8.74233 -8.22000 -7.07324 -5.84390 -3.14908 1.51477 2.16509 2.27346 3.26872 3.33345 3.41313 3.47765 3.48455 3.65029 4.17531 4.48564 4.52850 4.54560 4.66845 4.69063 4.80444 4.82555 4.89299 4.91852 4.95898 5.04458 5.17277 5.21943 5.23922 5.27675 5.39818 5.56526 5.57536 5.62580 5.72142 5.76885 5.79652 5.87039 5.97870 6.05102 6.24596 6.26380 6.40033 6.43003 6.48822 6.60782 6.65385 6.70247 6.74257 6.89134 7.53605 7.65190 7.88727 8.32906 8.50373 9.45440 9.98778 10.33867 11.37396 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.009025 B = 0.002771 C = 0.002198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3101.883393 B =10102.607676 C =12738.535842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.389 6.389 3 C 0.065 3.935 4 C -0.134 4.134 5 C 0.137 3.863 6 N -0.366 5.366 7 C 0.122 3.878 8 C -0.284 4.284 9 C 0.607 3.393 10 O -0.565 6.565 11 N -0.609 5.609 12 C 0.064 3.936 13 C 0.177 3.823 14 H 0.070 0.930 15 N -0.709 5.709 16 C -0.247 4.247 17 H 0.072 0.928 18 C -0.007 4.007 19 N -0.929 5.929 20 Si 0.906 3.094 21 H -0.289 1.289 22 H -0.291 1.291 23 H -0.280 1.280 24 C -0.115 4.115 25 H 0.084 0.916 26 C -0.133 4.133 27 C 0.119 3.881 28 C 0.078 3.922 29 N -0.294 5.294 30 H 0.042 0.958 31 H 0.041 0.959 32 H 0.087 0.913 33 H 0.053 0.947 34 H 0.052 0.948 35 H 0.091 0.909 36 H 0.079 0.921 37 H 0.100 0.900 38 H 0.090 0.910 39 H 0.186 0.814 40 H 0.072 0.928 41 H 0.076 0.924 42 H 0.387 0.613 43 H 0.256 0.744 44 H 0.048 0.952 45 H 0.067 0.933 46 H 0.052 0.948 47 H 0.065 0.935 48 H 0.061 0.939 49 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.969 9.190 -8.007 23.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.308 6.308 3 C -0.012 4.012 4 C -0.173 4.173 5 C 0.016 3.984 6 N -0.145 5.145 7 C -0.029 4.029 8 C -0.298 4.298 9 C 0.397 3.603 10 O -0.446 6.446 11 N -0.341 5.341 12 C -0.062 4.062 13 C 0.065 3.935 14 H 0.088 0.912 15 N -0.349 5.349 16 C -0.378 4.378 17 H 0.090 0.910 18 C -0.204 4.204 19 N -0.576 5.576 20 Si 0.737 3.263 21 H -0.217 1.217 22 H -0.217 1.217 23 H -0.206 1.206 24 C -0.135 4.135 25 H 0.102 0.898 26 C -0.191 4.191 27 C -0.003 4.003 28 C -0.110 4.110 29 N -0.114 5.114 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.106 0.894 33 H 0.072 0.928 34 H 0.070 0.930 35 H 0.109 0.891 36 H 0.098 0.902 37 H 0.118 0.882 38 H 0.109 0.891 39 H 0.203 0.797 40 H 0.090 0.910 41 H 0.094 0.906 42 H 0.222 0.778 43 H 0.066 0.934 44 H 0.067 0.933 45 H 0.086 0.914 46 H 0.071 0.929 47 H 0.084 0.916 48 H 0.079 0.921 49 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -20.979 8.770 -7.640 23.987 hybrid contribution 0.310 -0.242 0.015 0.394 sum -20.668 8.529 -7.625 23.623 Atomic orbital electron populations 1.22765 0.80680 1.03040 1.00007 1.87909 1.19945 1.27537 1.95419 1.22376 0.93160 0.85193 1.00464 1.21767 0.93357 0.96505 1.05627 1.21598 0.74294 0.98201 1.04342 1.48499 1.06625 1.38474 1.20868 1.22885 0.89405 0.96269 0.94351 1.20220 0.93397 1.12990 1.03220 1.16867 0.81497 0.80000 0.81938 1.90722 1.86667 1.36389 1.30829 1.48205 1.05396 1.38875 1.41616 1.23844 1.02174 0.88787 0.91403 1.21436 0.89112 0.91723 0.91278 0.91227 1.42302 1.56778 1.08996 1.26779 1.19244 1.25079 0.86251 1.07261 0.90957 1.24751 0.99764 0.98155 0.97729 1.69657 1.35877 1.35532 1.16548 0.86209 0.77863 0.85012 0.77209 1.21667 1.21745 1.20597 1.22528 0.95201 0.97087 0.98729 0.89802 1.21645 0.98216 1.00748 0.98463 1.21950 0.81552 0.98426 0.98414 1.24954 0.95011 0.95798 0.95220 1.77245 1.03762 1.17165 1.13191 0.93936 0.93992 0.89424 0.92832 0.93021 0.89078 0.90237 0.88213 0.89136 0.79735 0.91033 0.90552 0.77848 0.93364 0.93270 0.91441 0.92882 0.91633 0.92070 0.77865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 11.01 101.05 1.11 1.30 16 2 O -0.39 -3.56 10.70 -35.23 -0.38 -3.94 16 3 C 0.07 0.43 5.94 37.16 0.22 0.65 16 4 C -0.13 -1.09 5.76 -26.73 -0.15 -1.25 16 5 C 0.14 0.98 6.49 -4.04 -0.03 0.95 16 6 N -0.37 -4.20 3.65 -60.81 -0.22 -4.42 16 7 C 0.12 1.47 11.26 -16.56 -0.19 1.29 16 8 C -0.28 -4.24 6.05 -105.07 -0.64 -4.88 16 9 C 0.61 10.31 7.83 -12.52 -0.10 10.21 16 10 O -0.57 -10.82 17.24 5.27 0.09 -10.72 16 11 N -0.61 -9.95 3.32 -171.64 -0.57 -10.52 16 12 C 0.06 1.07 4.80 -2.41 -0.01 1.06 16 13 C 0.18 3.26 3.18 -65.66 -0.21 3.05 16 14 H 0.07 1.33 8.00 -51.93 -0.42 0.91 16 15 N -0.71 -16.24 5.24 -51.23 -0.27 -16.51 16 16 C -0.25 -6.41 9.96 -15.06 -0.15 -6.56 16 17 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 18 C -0.01 -0.20 5.50 -17.43 -0.10 -0.30 16 19 N -0.93 -26.74 13.06 55.49 0.72 -26.02 16 20 Si 0.91 21.64 29.55 -169.99 -5.02 16.62 16 21 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 22 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 23 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 24 C -0.12 -1.80 3.18 -88.79 -0.28 -2.08 16 25 H 0.08 1.34 8.00 -51.93 -0.42 0.92 16 26 C -0.13 -1.90 9.14 37.15 0.34 -1.56 16 27 C 0.12 1.81 6.47 -3.06 -0.02 1.79 16 28 C 0.08 1.16 10.28 -16.98 -0.17 0.99 16 29 N -0.29 -4.29 12.33 30.86 0.38 -3.91 16 30 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 31 H 0.04 0.19 8.14 -51.93 -0.42 -0.23 16 32 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 34 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 35 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.10 0.41 8.06 -51.93 -0.42 -0.01 16 38 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.19 1.71 8.06 -52.49 -0.42 1.28 16 40 H 0.07 1.23 7.73 -51.93 -0.40 0.83 16 41 H 0.08 1.28 5.92 -51.93 -0.31 0.97 16 42 H 0.39 9.48 7.76 -40.82 -0.32 9.17 16 43 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 44 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 45 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 46 H 0.05 0.73 8.13 -51.93 -0.42 0.31 16 47 H 0.07 0.98 7.82 -51.93 -0.41 0.57 16 48 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 49 H 0.21 3.04 4.86 -52.48 -0.26 2.78 16 LS Contribution 403.31 15.07 6.08 6.08 Total: -1.00 -32.94 403.31 -7.54 -40.48 By element: Atomic # 1 Polarization: 16.18 SS G_CDS: -7.98 Total: 8.20 kcal Atomic # 6 Polarization: 5.04 SS G_CDS: -0.37 Total: 4.67 kcal Atomic # 7 Polarization: -61.43 SS G_CDS: 0.04 Total: -61.38 kcal Atomic # 8 Polarization: -14.38 SS G_CDS: -0.29 Total: -14.67 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -32.94 -7.54 -40.48 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755119829.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.382 kcal (2) G-P(sol) polarization free energy of solvation -32.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.476 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds