Wall clock time and date at job start Tue Mar 31 2020 19:21:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42902 * 114.00002 * 2 1 4 4 C 1.52999 * 109.47084 * 180.02562 * 3 2 1 5 5 C 1.52999 * 109.47348 * 180.02562 * 4 3 2 6 6 N 1.46502 * 109.47313 * 179.97438 * 5 4 3 7 7 C 1.34260 * 125.74888 * 124.71443 * 6 5 4 8 8 C 1.38045 * 107.41159 * 179.84751 * 7 6 5 9 9 C 1.47434 * 126.41533 * 180.12686 * 8 7 6 10 10 O 1.21604 * 119.99666 * 7.24869 * 9 8 7 11 11 N 1.34773 * 120.00216 * 187.25318 * 9 8 7 12 12 C 1.47420 * 125.64700 * 5.55328 * 11 9 8 13 13 C 1.55135 * 104.71961 * 155.82155 * 12 11 9 14 14 H 1.09003 * 111.22489 * 279.17476 * 13 12 11 15 15 N 1.46501 * 110.90572 * 155.28004 * 13 12 11 16 16 C 1.36934 * 120.00092 * 92.97389 * 15 13 12 17 17 H 1.07994 * 120.00398 * 0.02562 * 16 15 13 18 18 C 1.38819 * 119.99552 * 179.97438 * 16 15 13 19 19 N 1.31616 * 120.00144 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 119.99585 * 180.02562 * 18 16 15 21 21 H 1.48508 * 109.47266 * 90.00147 * 20 18 16 22 22 H 1.48503 * 109.46893 * 209.99866 * 20 18 16 23 23 H 1.48496 * 109.47440 * 329.99741 * 20 18 16 24 24 C 1.55153 * 101.48775 * 37.29466 * 13 12 11 25 25 H 1.09005 * 110.71808 * 82.69522 * 24 13 12 26 26 C 1.52991 * 110.87500 * 205.89833 * 24 13 12 27 27 C 1.47027 * 125.64743 * 185.86523 * 11 9 8 28 28 C 1.41286 * 107.17152 * 0.41652 * 8 7 6 29 29 N 1.30444 * 108.02613 * 359.74225 * 28 8 7 30 30 H 1.08994 * 109.46726 * 300.00097 * 1 2 3 31 31 H 1.09000 * 109.47061 * 59.99934 * 1 2 3 32 32 H 1.08995 * 109.47049 * 180.02562 * 1 2 3 33 33 H 1.08995 * 109.47053 * 60.00273 * 3 2 1 34 34 H 1.08994 * 109.47098 * 299.99664 * 3 2 1 35 35 H 1.09007 * 109.47189 * 299.99959 * 4 3 2 36 36 H 1.09005 * 109.47260 * 59.99466 * 4 3 2 37 37 H 1.08997 * 109.46772 * 300.00225 * 5 4 3 38 38 H 1.09000 * 109.46712 * 59.99737 * 5 4 3 39 39 H 1.08000 * 126.29432 * 0.02562 * 7 6 5 40 40 H 1.08994 * 110.37073 * 274.75020 * 12 11 9 41 41 H 1.09005 * 110.36934 * 37.07909 * 12 11 9 42 42 H 0.97003 * 119.99717 * 272.97605 * 15 13 12 43 43 H 0.97002 * 119.99495 * 179.97438 * 19 18 16 44 44 H 1.09001 * 109.47652 * 175.06867 * 26 24 13 45 45 H 1.09005 * 109.47227 * 295.07037 * 26 24 13 46 46 H 1.08997 * 109.47350 * 55.06159 * 26 24 13 47 47 H 1.08993 * 109.88067 * 300.43937 * 27 11 9 48 48 H 1.09003 * 109.87718 * 61.45313 * 27 11 9 49 49 H 1.08003 * 125.98556 * 179.72435 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 6 4.1578 2.5823 0.0000 6 7 5.6183 2.4666 0.0000 7 6 6.4493 3.0237 -0.8954 8 6 7.7362 2.6764 -0.5365 9 6 8.9750 3.0678 -1.2335 10 8 8.9314 3.8694 -2.1469 11 7 10.1558 2.5373 -0.8583 12 6 10.3397 1.4758 0.1480 13 6 11.6905 0.8097 -0.2241 14 1 11.5673 0.0952 -1.0380 15 7 12.2973 0.1694 0.9455 16 6 12.0611 -1.1551 1.2005 17 1 11.4279 -1.7278 0.5393 18 6 12.6366 -1.7619 2.3086 19 7 13.4096 -1.0643 3.1136 20 14 12.3149 -3.5689 2.6560 21 1 13.3465 -4.3946 1.9782 22 1 12.3723 -3.8092 4.1204 23 1 10.9705 -3.9395 2.1459 24 6 12.5238 2.0358 -0.6818 25 1 12.9562 2.5504 0.1764 26 6 13.6174 1.6152 -1.6656 27 6 11.4742 2.9259 -1.3802 28 6 7.6435 1.8699 0.6199 29 7 6.3819 1.7519 0.9296 30 1 -0.3632 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.6887 1.8463 0.8900 34 1 1.6887 1.8463 -0.8900 35 1 3.8575 0.6435 0.8892 36 1 3.8568 0.6438 -0.8908 37 1 3.8358 3.1238 -0.8895 38 1 3.8365 3.1227 0.8904 39 1 6.1636 3.6339 -1.7394 40 1 10.3889 1.9057 1.1483 41 1 9.5293 0.7494 0.0857 42 1 12.8664 0.6837 1.5393 43 1 13.8113 -1.4883 3.8881 44 1 14.1309 2.5012 -2.0389 45 1 14.3326 0.9673 -1.1586 46 1 13.1680 1.0770 -2.5002 47 1 11.5088 2.7642 -2.4575 48 1 11.6668 3.9752 -1.1565 49 1 8.4721 1.4282 1.1536 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755119829.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:21:21 Heat of formation + Delta-G solvation = -7.319018 kcal Electronic energy + Delta-G solvation = -28747.214665 eV Core-core repulsion = 24710.850738 eV Total energy + Delta-G solvation = -4036.363927 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.47678 -40.75542 -39.00094 -38.73163 -35.92799 -35.77848 -33.94821 -32.58837 -32.18899 -31.21438 -29.17146 -28.32679 -27.33594 -26.00824 -25.91677 -23.95240 -23.22245 -22.45713 -21.63824 -21.21134 -20.45671 -19.10615 -18.48261 -17.51126 -17.30421 -17.21973 -17.10771 -16.62682 -16.44577 -16.15968 -15.74029 -15.38881 -15.33509 -15.16538 -14.92676 -14.54884 -14.39670 -14.23410 -13.93330 -13.74671 -13.38740 -13.25270 -13.08720 -12.97543 -12.83173 -12.81774 -12.75901 -12.30528 -12.19432 -12.09572 -12.06405 -11.96981 -11.84740 -11.67287 -11.38355 -10.98358 -10.85060 -10.65036 -10.61032 -9.87386 -9.51628 -8.99427 -7.91855 -5.20580 0.50527 1.10447 1.33799 1.51231 1.52061 1.59840 2.06065 2.40801 2.59163 2.75464 3.36971 3.39745 3.61544 3.77425 3.84405 3.85410 3.96881 4.00452 4.03841 4.10943 4.21319 4.22570 4.34490 4.39178 4.43517 4.46856 4.49652 4.54001 4.54790 4.57826 4.64724 4.76652 4.85378 4.88914 4.93934 4.96083 5.08494 5.13631 5.15320 5.25059 5.35254 5.44640 5.49788 5.58875 5.86111 6.21751 6.29252 6.48061 6.56538 7.19610 7.37609 8.08796 8.33642 9.30755 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.009025 B = 0.002771 C = 0.002198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3101.883393 B =10102.607676 C =12738.535842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.425 6.425 3 C 0.066 3.934 4 C -0.128 4.128 5 C 0.129 3.871 6 N -0.355 5.355 7 C 0.142 3.858 8 C -0.314 4.314 9 C 0.607 3.393 10 O -0.589 6.589 11 N -0.610 5.610 12 C 0.081 3.919 13 C 0.171 3.829 14 H 0.065 0.935 15 N -0.717 5.717 16 C -0.238 4.238 17 H 0.077 0.923 18 C -0.067 4.067 19 N -0.964 5.964 20 Si 0.964 3.036 21 H -0.289 1.289 22 H -0.298 1.298 23 H -0.271 1.271 24 C -0.105 4.105 25 H 0.080 0.920 26 C -0.128 4.128 27 C 0.122 3.878 28 C 0.070 3.930 29 N -0.320 5.320 30 H 0.052 0.948 31 H 0.056 0.944 32 H 0.089 0.911 33 H 0.068 0.932 34 H 0.076 0.924 35 H 0.060 0.940 36 H 0.064 0.936 37 H 0.142 0.858 38 H 0.107 0.893 39 H 0.220 0.780 40 H 0.065 0.935 41 H 0.076 0.924 42 H 0.378 0.622 43 H 0.250 0.750 44 H 0.074 0.926 45 H 0.047 0.953 46 H 0.058 0.942 47 H 0.073 0.927 48 H 0.070 0.930 49 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.157 10.350 -9.572 26.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.345 6.345 3 C -0.011 4.011 4 C -0.166 4.166 5 C 0.010 3.990 6 N -0.134 5.134 7 C -0.010 4.010 8 C -0.329 4.329 9 C 0.398 3.602 10 O -0.472 6.472 11 N -0.342 5.342 12 C -0.045 4.045 13 C 0.060 3.940 14 H 0.083 0.917 15 N -0.356 5.356 16 C -0.370 4.370 17 H 0.095 0.905 18 C -0.260 4.260 19 N -0.614 5.614 20 Si 0.794 3.206 21 H -0.216 1.216 22 H -0.225 1.225 23 H -0.196 1.196 24 C -0.124 4.124 25 H 0.099 0.901 26 C -0.185 4.185 27 C -0.001 4.001 28 C -0.117 4.117 29 N -0.140 5.140 30 H 0.071 0.929 31 H 0.074 0.926 32 H 0.108 0.892 33 H 0.086 0.914 34 H 0.094 0.906 35 H 0.079 0.921 36 H 0.083 0.917 37 H 0.160 0.840 38 H 0.126 0.874 39 H 0.236 0.764 40 H 0.083 0.917 41 H 0.094 0.906 42 H 0.210 0.790 43 H 0.059 0.941 44 H 0.093 0.907 45 H 0.067 0.933 46 H 0.077 0.923 47 H 0.091 0.909 48 H 0.089 0.911 49 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -23.213 9.931 -9.233 26.884 hybrid contribution 0.848 -0.546 0.429 1.096 sum -22.365 9.385 -8.804 25.803 Atomic orbital electron populations 1.22919 0.79159 1.03693 1.01183 1.87857 1.21777 1.29169 1.95706 1.22455 0.91644 0.84677 1.02317 1.21661 0.94909 0.96687 1.03369 1.22060 0.71550 0.98066 1.07303 1.48838 1.08068 1.36872 1.19577 1.23355 0.88369 0.94959 0.94348 1.20212 0.93879 1.14878 1.03950 1.17120 0.81956 0.79486 0.81607 1.90698 1.87013 1.37496 1.31953 1.48219 1.05947 1.38650 1.41402 1.23482 1.00930 0.88849 0.91243 1.21579 0.90262 0.92599 0.89580 0.91740 1.42364 1.57073 1.08256 1.27892 1.19569 1.23477 0.87464 1.06489 0.90549 1.25433 1.00636 1.01648 0.98257 1.69793 1.37663 1.36820 1.17153 0.85279 0.77944 0.81007 0.76360 1.21631 1.22527 1.19620 1.22429 0.95423 0.95560 0.99028 0.90134 1.21604 0.97405 1.01571 0.97967 1.21989 0.80737 0.98710 0.98644 1.24813 0.95171 0.96212 0.95541 1.77185 1.03831 1.18279 1.14657 0.92934 0.92569 0.89209 0.91423 0.90557 0.92112 0.91742 0.83981 0.87442 0.76393 0.91666 0.90622 0.78963 0.94069 0.90706 0.93342 0.92315 0.90902 0.91123 0.78863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 11.01 113.37 1.25 1.51 16 2 O -0.43 -7.28 10.70 -148.98 -1.59 -8.87 16 3 C 0.07 0.72 5.94 71.98 0.43 1.15 16 4 C -0.13 -1.90 5.76 30.59 0.18 -1.72 16 5 C 0.13 1.44 6.49 86.38 0.56 2.00 16 6 N -0.36 -7.42 3.65 -346.30 -1.26 -8.69 16 7 C 0.14 3.09 11.26 84.28 0.95 4.04 16 8 C -0.31 -9.10 6.05 -20.15 -0.12 -9.22 16 9 C 0.61 20.05 7.83 86.67 0.68 20.72 16 10 O -0.59 -21.68 17.24 -4.04 -0.07 -21.75 16 11 N -0.61 -19.58 3.32 -815.21 -2.71 -22.29 16 12 C 0.08 2.73 4.80 86.94 0.42 3.15 16 13 C 0.17 6.28 3.18 46.46 0.15 6.43 16 14 H 0.06 2.45 8.00 -2.39 -0.02 2.43 16 15 N -0.72 -33.35 5.24 -316.01 -1.66 -35.00 16 16 C -0.24 -12.44 9.96 84.04 0.84 -11.60 16 17 H 0.08 3.86 7.83 -2.91 -0.02 3.84 16 18 C -0.07 -3.69 5.50 84.86 0.47 -3.22 16 19 N -0.96 -56.75 13.06 21.65 0.28 -56.47 16 20 Si 0.96 45.05 29.55 68.60 2.03 47.08 16 21 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 22 H -0.30 -14.19 7.11 99.48 0.71 -13.48 16 23 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 24 C -0.10 -3.19 3.18 -9.61 -0.03 -3.22 16 25 H 0.08 2.54 8.00 -2.38 -0.02 2.52 16 26 C -0.13 -3.49 9.14 71.98 0.66 -2.83 16 27 C 0.12 3.54 6.47 86.73 0.56 4.10 16 28 C 0.07 2.09 10.28 85.65 0.88 2.97 16 29 N -0.32 -9.18 12.33 -56.28 -0.69 -9.87 16 30 H 0.05 0.40 8.14 -2.39 -0.02 0.38 16 31 H 0.06 0.38 8.14 -2.39 -0.02 0.36 16 32 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 34 H 0.08 0.46 8.14 -2.39 -0.02 0.44 16 35 H 0.06 1.27 8.14 -2.38 -0.02 1.25 16 36 H 0.06 1.14 8.14 -2.38 -0.02 1.12 16 37 H 0.14 0.45 8.06 -2.39 -0.02 0.43 16 38 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 39 H 0.22 3.15 8.06 -2.91 -0.02 3.12 16 40 H 0.07 2.30 7.73 -2.39 -0.02 2.28 16 41 H 0.08 2.57 5.92 -2.38 -0.01 2.56 16 42 H 0.38 18.95 7.76 -92.71 -0.72 18.23 16 43 H 0.25 14.45 8.31 -92.71 -0.77 13.68 16 44 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 45 H 0.05 1.51 8.14 -2.38 -0.02 1.49 16 46 H 0.06 1.53 8.13 -2.39 -0.02 1.51 16 47 H 0.07 2.04 7.82 -2.39 -0.02 2.02 16 48 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 49 H 0.19 5.99 4.86 -2.91 -0.01 5.98 16 Total: -1.00 -72.13 403.31 2.40 -69.72 By element: Atomic # 1 Polarization: 31.66 SS G_CDS: 0.23 Total: 31.89 kcal Atomic # 6 Polarization: 6.40 SS G_CDS: 7.86 Total: 14.25 kcal Atomic # 7 Polarization: -126.28 SS G_CDS: -6.04 Total: -132.32 kcal Atomic # 8 Polarization: -28.96 SS G_CDS: -1.66 Total: -30.63 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.08 kcal Total: -72.13 2.40 -69.72 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755119829.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.403 kcal (2) G-P(sol) polarization free energy of solvation -72.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds