Wall clock time and date at job start Tue Mar 31 2020 20:12:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.47089 * 2 1 4 4 C 1.52999 * 109.47027 * 240.00856 * 2 1 3 5 5 N 1.46506 * 109.47139 * 185.00029 * 4 2 1 6 6 C 1.34771 * 119.99917 * 179.97438 * 5 4 2 7 7 O 1.21277 * 120.00549 * 359.97438 * 6 5 4 8 8 C 1.50704 * 119.99882 * 179.97438 * 6 5 4 9 9 H 1.09005 * 109.46934 * 299.99950 * 8 6 5 10 10 C 1.52997 * 109.47200 * 59.99626 * 8 6 5 11 11 C 1.52995 * 109.47321 * 179.97438 * 8 6 5 12 12 C 1.52998 * 109.47220 * 175.00048 * 11 8 6 13 13 C 1.50703 * 109.47008 * 179.97438 * 12 11 8 14 14 C 1.38226 * 120.01269 * 100.00065 * 13 12 11 15 15 C 1.38223 * 120.02506 * 179.97438 * 14 13 12 16 16 C 1.38265 * 120.05246 * 0.02562 * 15 14 13 17 17 C 1.38173 * 120.02563 * 359.97438 * 16 15 14 18 18 C 1.38433 * 120.01528 * 279.72188 * 13 12 11 19 19 F 1.35107 * 120.02658 * 0.02562 * 18 13 12 20 20 N 1.46498 * 109.47282 * 120.00211 * 2 1 3 21 21 C 1.46503 * 119.99725 * 60.00130 * 20 2 1 22 22 C 1.36936 * 120.00458 * 240.00072 * 20 2 1 23 23 H 1.08007 * 119.99440 * 23.06947 * 22 20 2 24 24 C 1.38808 * 119.99993 * 203.07232 * 22 20 2 25 25 N 1.31621 * 120.00271 * 11.69517 * 24 22 20 26 26 Si 1.86804 * 119.99584 * 191.69198 * 24 22 20 27 27 H 1.48492 * 109.47088 * 60.00178 * 26 24 22 28 28 H 1.48502 * 109.46645 * 179.97438 * 26 24 22 29 29 H 1.48497 * 109.47401 * 299.99727 * 26 24 22 30 30 H 1.09001 * 109.47205 * 299.99644 * 1 2 3 31 31 H 1.09004 * 109.47272 * 59.99404 * 1 2 3 32 32 H 1.08999 * 109.47342 * 179.97438 * 1 2 3 33 33 H 1.08991 * 109.47322 * 64.99803 * 4 2 1 34 34 H 1.09005 * 109.47025 * 304.99644 * 4 2 1 35 35 H 0.97000 * 119.99860 * 359.97438 * 5 4 2 36 36 H 1.09005 * 109.46913 * 60.00310 * 10 8 6 37 37 H 1.09001 * 109.47415 * 179.97438 * 10 8 6 38 38 H 1.09000 * 109.47710 * 300.00611 * 10 8 6 39 39 H 1.08998 * 109.47341 * 294.99949 * 11 8 6 40 40 H 1.09003 * 109.47263 * 54.99451 * 11 8 6 41 41 H 1.09002 * 109.47089 * 299.99451 * 12 11 8 42 42 H 1.08994 * 109.47254 * 60.00082 * 12 11 8 43 43 H 1.08003 * 119.98510 * 359.95028 * 14 13 12 44 44 H 1.08001 * 119.96871 * 179.97438 * 15 14 13 45 45 H 1.07996 * 119.98736 * 179.97438 * 16 15 14 46 46 H 1.08002 * 120.01395 * 179.97438 * 17 16 15 47 47 H 1.09004 * 109.47153 * 93.94768 * 21 20 2 48 48 H 1.08997 * 109.47351 * 213.94410 * 21 20 2 49 49 H 1.09000 * 109.47269 * 333.94790 * 21 20 2 50 50 H 0.96995 * 119.99734 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 7 3.5001 -0.8262 -1.1907 6 6 4.1729 -1.4289 -2.1909 7 8 3.5699 -1.8845 -3.1393 8 6 5.6749 -1.5365 -2.1308 9 1 6.1092 -0.5378 -2.0856 10 6 6.0802 -2.3258 -0.8844 11 6 6.1848 -2.2588 -3.3795 12 6 7.7148 -2.2584 -3.3799 13 6 8.2170 -2.9704 -4.6095 14 6 8.6430 -2.2423 -5.7045 15 6 9.1041 -2.8951 -6.8322 16 6 9.1395 -4.2768 -6.8666 17 6 8.7142 -5.0068 -5.7732 18 6 8.2574 -4.3538 -4.6406 19 9 7.8461 -5.0665 -3.5690 20 7 2.0183 -0.6906 1.1961 21 6 1.6644 -2.0933 1.4278 22 6 2.8056 -0.0253 2.0976 23 1 2.7712 1.0529 2.1520 24 6 3.6478 -0.7364 2.9412 25 7 3.8660 -2.0166 2.7272 26 14 4.4718 0.1237 4.3803 27 1 3.4336 0.6726 5.2891 28 1 5.3140 -0.8489 5.1218 29 1 5.3223 1.2309 3.8742 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.7516 -0.1581 -2.1369 34 1 1.6053 -1.7197 -1.2954 35 1 3.9824 -0.4621 -0.4320 36 1 5.6459 -3.3246 -0.9297 37 1 7.1666 -2.4041 -0.8412 38 1 5.7169 -1.8117 0.0054 39 1 5.8218 -3.2866 -3.3784 40 1 5.8210 -1.7460 -4.2699 41 1 8.0779 -1.2306 -3.3810 42 1 8.0785 -2.7712 -2.4895 43 1 8.6150 -1.1629 -5.6790 44 1 9.4363 -2.3253 -7.6875 45 1 9.4996 -4.7858 -7.7484 46 1 8.7415 -6.0861 -5.8004 47 1 2.4509 -2.7365 1.0329 48 1 1.5552 -2.2684 2.4981 49 1 0.7240 -2.3186 0.9249 50 1 4.4542 -2.5135 3.3169 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755314872.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:12:00 Heat of formation + Delta-G solvation = -57.419046 kcal Electronic energy + Delta-G solvation = -29493.230790 eV Core-core repulsion = 25434.774401 eV Total energy + Delta-G solvation = -4058.456389 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -48.93666 -39.56644 -39.09472 -36.80193 -35.43474 -33.61510 -32.50567 -31.76591 -30.70362 -29.31400 -28.23139 -26.03193 -25.80943 -24.90978 -23.11163 -22.94864 -22.23103 -20.84055 -19.46497 -18.93634 -17.70929 -16.92150 -16.64266 -16.55355 -15.90748 -15.62276 -15.44237 -15.24051 -14.89216 -14.39189 -14.21554 -13.92277 -13.66148 -13.47529 -13.24693 -12.90908 -12.81932 -12.64494 -12.59947 -12.35137 -12.12197 -11.95853 -11.82549 -11.58928 -11.49750 -11.32847 -11.13127 -11.06889 -10.80314 -10.71942 -10.55995 -10.49310 -10.41145 -10.30426 -9.87254 -9.79223 -9.21488 -9.09489 -8.76855 -8.60055 -8.27694 -6.81166 -5.76618 -3.24728 0.97279 1.00430 3.25200 3.33358 3.37839 3.40561 3.41476 3.90315 4.13134 4.43326 4.46848 4.56198 4.71963 4.96511 5.06862 5.10735 5.18975 5.24340 5.36021 5.40179 5.46706 5.56319 5.63071 5.64403 5.76601 5.78016 5.87850 5.93634 5.98676 6.06417 6.10743 6.15387 6.16862 6.19698 6.24323 6.33037 6.39024 6.42191 6.49488 6.69733 6.70824 6.74566 6.82483 6.92031 7.22517 7.39508 7.72054 7.78287 8.30918 8.34428 8.91126 9.18705 9.81634 10.31967 11.26003 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.014713 B = 0.002678 C = 0.002446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1902.608669 B =10451.432530 C =11443.611545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.158 3.842 3 H 0.067 0.933 4 C 0.108 3.892 5 N -0.699 5.699 6 C 0.513 3.487 7 O -0.566 6.566 8 C -0.107 4.107 9 H 0.091 0.909 10 C -0.144 4.144 11 C -0.090 4.090 12 C -0.084 4.084 13 C -0.108 4.108 14 C -0.091 4.091 15 C -0.131 4.131 16 C -0.100 4.100 17 C -0.154 4.154 18 C 0.101 3.899 19 F -0.134 7.134 20 N -0.593 5.593 21 C 0.164 3.836 22 C -0.261 4.261 23 H 0.066 0.934 24 C 0.007 3.993 25 N -0.899 5.899 26 Si 0.901 3.099 27 H -0.286 1.286 28 H -0.291 1.291 29 H -0.284 1.284 30 H 0.056 0.944 31 H 0.045 0.955 32 H 0.051 0.949 33 H 0.051 0.949 34 H 0.056 0.944 35 H 0.414 0.586 36 H 0.058 0.942 37 H 0.059 0.941 38 H 0.078 0.922 39 H 0.069 0.931 40 H 0.069 0.931 41 H 0.077 0.923 42 H 0.081 0.919 43 H 0.132 0.868 44 H 0.127 0.873 45 H 0.129 0.871 46 H 0.133 0.867 47 H 0.029 0.971 48 H 0.041 0.959 49 H -0.003 1.003 50 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.489 -0.715 -15.665 18.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.049 3.951 3 H 0.085 0.915 4 C -0.019 4.019 5 N -0.350 5.350 6 C 0.299 3.701 7 O -0.446 6.446 8 C -0.128 4.128 9 H 0.109 0.891 10 C -0.201 4.201 11 C -0.128 4.128 12 C -0.122 4.122 13 C -0.109 4.109 14 C -0.109 4.109 15 C -0.149 4.149 16 C -0.118 4.118 17 C -0.173 4.173 18 C 0.082 3.918 19 F -0.113 7.113 20 N -0.316 5.316 21 C 0.019 3.981 22 C -0.391 4.391 23 H 0.084 0.916 24 C -0.192 4.192 25 N -0.544 5.544 26 Si 0.731 3.269 27 H -0.213 1.213 28 H -0.217 1.217 29 H -0.210 1.210 30 H 0.075 0.925 31 H 0.064 0.936 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.074 0.926 35 H 0.251 0.749 36 H 0.077 0.923 37 H 0.078 0.922 38 H 0.097 0.903 39 H 0.088 0.912 40 H 0.088 0.912 41 H 0.096 0.904 42 H 0.099 0.901 43 H 0.150 0.850 44 H 0.145 0.855 45 H 0.147 0.853 46 H 0.151 0.849 47 H 0.047 0.953 48 H 0.060 0.940 49 H 0.016 0.984 50 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 9.134 -1.193 -16.141 18.584 hybrid contribution 0.604 0.290 1.427 1.577 sum 9.738 -0.902 -14.714 17.668 Atomic orbital electron populations 1.22173 0.97619 1.01414 1.00569 1.20641 0.92524 0.95839 0.86069 0.91459 1.21900 0.80464 1.00802 0.98701 1.45857 1.07928 1.58028 1.23145 1.20495 0.89686 0.77593 0.82307 1.90620 1.70563 1.49043 1.34344 1.21257 0.92804 1.01312 0.97461 0.89081 1.21806 1.01109 1.00738 0.96489 1.21320 0.92588 1.01738 0.97160 1.20693 0.96433 1.00391 0.94635 1.20045 1.00955 0.91888 0.97977 1.21001 0.97544 1.00207 0.92105 1.21194 1.00685 0.94569 0.98436 1.20975 0.98993 0.94083 0.97787 1.21162 1.02235 1.00939 0.92991 1.17625 1.00113 0.89275 0.84797 1.91523 1.87885 1.78106 1.53767 1.43916 1.57881 1.09641 1.20181 1.20745 0.93911 0.84514 0.98884 1.19151 1.16156 0.91050 1.12709 0.91639 1.24992 0.97876 0.96127 1.00196 1.70065 1.38882 1.07223 1.38187 0.86413 0.79111 0.78495 0.82908 1.21260 1.21726 1.21004 0.92489 0.93629 0.92988 0.93126 0.92603 0.74873 0.92294 0.92221 0.90338 0.91220 0.91190 0.90387 0.90065 0.85034 0.85484 0.85275 0.84893 0.95274 0.93983 0.98443 0.93688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.64 9.18 37.16 0.34 -2.30 16 2 C 0.16 3.02 2.87 -67.93 -0.19 2.83 16 3 H 0.07 1.27 7.87 -51.93 -0.41 0.86 16 4 C 0.11 2.04 4.97 -4.04 -0.02 2.02 16 5 N -0.70 -13.38 5.28 -60.29 -0.32 -13.70 16 6 C 0.51 9.66 7.15 -10.99 -0.08 9.58 16 7 O -0.57 -12.23 15.92 5.56 0.09 -12.14 16 8 C -0.11 -1.62 2.73 -91.77 -0.25 -1.87 16 9 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 10 C -0.14 -2.28 8.84 37.16 0.33 -1.96 16 11 C -0.09 -1.27 4.01 -26.73 -0.11 -1.38 16 12 C -0.08 -0.97 4.83 -27.88 -0.13 -1.10 16 13 C -0.11 -1.22 5.14 -104.55 -0.54 -1.76 16 14 C -0.09 -0.85 9.67 -39.59 -0.38 -1.23 16 15 C -0.13 -1.07 10.04 -39.58 -0.40 -1.46 16 16 C -0.10 -0.83 10.04 -39.60 -0.40 -1.22 16 17 C -0.15 -1.53 10.03 -39.51 -0.40 -1.93 16 18 C 0.10 1.23 7.24 -39.42 -0.29 0.94 16 19 F -0.13 -1.86 16.66 2.25 0.04 -1.82 16 20 N -0.59 -13.56 2.29 -173.48 -0.40 -13.96 16 21 C 0.16 3.89 8.11 59.85 0.49 4.37 16 22 C -0.26 -6.51 9.32 -15.06 -0.14 -6.65 16 23 H 0.07 1.61 7.82 -52.48 -0.41 1.20 16 24 C 0.01 0.19 5.12 -17.43 -0.09 0.10 16 25 N -0.90 -24.04 10.65 55.49 0.59 -23.45 16 26 Si 0.90 20.57 29.57 -169.99 -5.03 15.55 16 27 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 28 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 29 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 30 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.05 0.88 6.66 -51.93 -0.35 0.54 16 33 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.06 1.15 7.84 -51.93 -0.41 0.74 16 35 H 0.41 8.28 7.31 -40.82 -0.30 7.98 16 36 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.06 0.81 6.56 -51.93 -0.34 0.47 16 38 H 0.08 1.44 7.56 -51.93 -0.39 1.04 16 39 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 40 H 0.07 1.02 7.95 -51.93 -0.41 0.60 16 41 H 0.08 0.75 8.01 -51.93 -0.42 0.34 16 42 H 0.08 0.96 6.36 -51.93 -0.33 0.63 16 43 H 0.13 0.98 8.04 -52.48 -0.42 0.56 16 44 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 45 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 46 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 47 H 0.03 0.76 7.41 -51.93 -0.38 0.37 16 48 H 0.04 1.08 7.23 -51.93 -0.38 0.70 16 49 H 0.00 -0.06 6.43 -51.93 -0.33 -0.40 16 50 H 0.25 6.72 8.31 -40.82 -0.34 6.38 16 LS Contribution 405.37 15.07 6.11 6.11 Total: -1.00 -29.05 405.37 -9.39 -38.45 By element: Atomic # 1 Polarization: 16.22 SS G_CDS: -8.22 Total: 8.00 kcal Atomic # 6 Polarization: -0.77 SS G_CDS: -2.26 Total: -3.03 kcal Atomic # 7 Polarization: -50.98 SS G_CDS: -0.12 Total: -51.11 kcal Atomic # 8 Polarization: -12.23 SS G_CDS: 0.09 Total: -12.14 kcal Atomic # 9 Polarization: -1.86 SS G_CDS: 0.04 Total: -1.82 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.03 Total: 15.55 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -29.05 -9.39 -38.45 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755314872.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.973 kcal (2) G-P(sol) polarization free energy of solvation -29.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds