Wall clock time and date at job start Tue Mar 31 2020 20:11:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.47089 * 2 1 4 4 C 1.52999 * 109.47027 * 240.00856 * 2 1 3 5 5 N 1.46506 * 109.47139 * 185.00029 * 4 2 1 6 6 C 1.34771 * 119.99917 * 179.97438 * 5 4 2 7 7 O 1.21277 * 120.00549 * 359.97438 * 6 5 4 8 8 C 1.50704 * 119.99882 * 179.97438 * 6 5 4 9 9 H 1.09005 * 109.46934 * 299.99950 * 8 6 5 10 10 C 1.52997 * 109.47200 * 59.99626 * 8 6 5 11 11 C 1.52995 * 109.47321 * 179.97438 * 8 6 5 12 12 C 1.52998 * 109.47220 * 175.00048 * 11 8 6 13 13 C 1.50703 * 109.47008 * 179.97438 * 12 11 8 14 14 C 1.38226 * 120.01269 * 100.00065 * 13 12 11 15 15 C 1.38223 * 120.02506 * 179.97438 * 14 13 12 16 16 C 1.38265 * 120.05246 * 0.02562 * 15 14 13 17 17 C 1.38173 * 120.02563 * 359.97438 * 16 15 14 18 18 C 1.38433 * 120.01528 * 279.72188 * 13 12 11 19 19 F 1.35107 * 120.02658 * 0.02562 * 18 13 12 20 20 N 1.46498 * 109.47282 * 120.00211 * 2 1 3 21 21 C 1.46503 * 119.99725 * 60.00130 * 20 2 1 22 22 C 1.36936 * 120.00458 * 240.00072 * 20 2 1 23 23 H 1.08007 * 119.99440 * 23.06947 * 22 20 2 24 24 C 1.38808 * 119.99993 * 203.07232 * 22 20 2 25 25 N 1.31621 * 120.00271 * 11.69517 * 24 22 20 26 26 Si 1.86804 * 119.99584 * 191.69198 * 24 22 20 27 27 H 1.48492 * 109.47088 * 60.00178 * 26 24 22 28 28 H 1.48502 * 109.46645 * 179.97438 * 26 24 22 29 29 H 1.48497 * 109.47401 * 299.99727 * 26 24 22 30 30 H 1.09001 * 109.47205 * 299.99644 * 1 2 3 31 31 H 1.09004 * 109.47272 * 59.99404 * 1 2 3 32 32 H 1.08999 * 109.47342 * 179.97438 * 1 2 3 33 33 H 1.08991 * 109.47322 * 64.99803 * 4 2 1 34 34 H 1.09005 * 109.47025 * 304.99644 * 4 2 1 35 35 H 0.97000 * 119.99860 * 359.97438 * 5 4 2 36 36 H 1.09005 * 109.46913 * 60.00310 * 10 8 6 37 37 H 1.09001 * 109.47415 * 179.97438 * 10 8 6 38 38 H 1.09000 * 109.47710 * 300.00611 * 10 8 6 39 39 H 1.08998 * 109.47341 * 294.99949 * 11 8 6 40 40 H 1.09003 * 109.47263 * 54.99451 * 11 8 6 41 41 H 1.09002 * 109.47089 * 299.99451 * 12 11 8 42 42 H 1.08994 * 109.47254 * 60.00082 * 12 11 8 43 43 H 1.08003 * 119.98510 * 359.95028 * 14 13 12 44 44 H 1.08001 * 119.96871 * 179.97438 * 15 14 13 45 45 H 1.07996 * 119.98736 * 179.97438 * 16 15 14 46 46 H 1.08002 * 120.01395 * 179.97438 * 17 16 15 47 47 H 1.09004 * 109.47153 * 93.94768 * 21 20 2 48 48 H 1.08997 * 109.47351 * 213.94410 * 21 20 2 49 49 H 1.09000 * 109.47269 * 333.94790 * 21 20 2 50 50 H 0.96995 * 119.99734 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 7 3.5001 -0.8262 -1.1907 6 6 4.1729 -1.4289 -2.1909 7 8 3.5699 -1.8845 -3.1393 8 6 5.6749 -1.5365 -2.1308 9 1 6.1092 -0.5378 -2.0856 10 6 6.0802 -2.3258 -0.8844 11 6 6.1848 -2.2588 -3.3795 12 6 7.7148 -2.2584 -3.3799 13 6 8.2170 -2.9704 -4.6095 14 6 8.6430 -2.2423 -5.7045 15 6 9.1041 -2.8951 -6.8322 16 6 9.1395 -4.2768 -6.8666 17 6 8.7142 -5.0068 -5.7732 18 6 8.2574 -4.3538 -4.6406 19 9 7.8461 -5.0665 -3.5690 20 7 2.0183 -0.6906 1.1961 21 6 1.6644 -2.0933 1.4278 22 6 2.8056 -0.0253 2.0976 23 1 2.7712 1.0529 2.1520 24 6 3.6478 -0.7364 2.9412 25 7 3.8660 -2.0166 2.7272 26 14 4.4718 0.1237 4.3803 27 1 3.4336 0.6726 5.2891 28 1 5.3140 -0.8489 5.1218 29 1 5.3223 1.2309 3.8742 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.7516 -0.1581 -2.1369 34 1 1.6053 -1.7197 -1.2954 35 1 3.9824 -0.4621 -0.4320 36 1 5.6459 -3.3246 -0.9297 37 1 7.1666 -2.4041 -0.8412 38 1 5.7169 -1.8117 0.0054 39 1 5.8218 -3.2866 -3.3784 40 1 5.8210 -1.7460 -4.2699 41 1 8.0779 -1.2306 -3.3810 42 1 8.0785 -2.7712 -2.4895 43 1 8.6150 -1.1629 -5.6790 44 1 9.4363 -2.3253 -7.6875 45 1 9.4996 -4.7858 -7.7484 46 1 8.7415 -6.0861 -5.8004 47 1 2.4509 -2.7365 1.0329 48 1 1.5552 -2.2684 2.4981 49 1 0.7240 -2.3186 0.9249 50 1 4.4542 -2.5135 3.3169 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755314872.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:11:59 Heat of formation + Delta-G solvation = -71.528656 kcal Electronic energy + Delta-G solvation = -29493.842628 eV Core-core repulsion = 25434.774401 eV Total energy + Delta-G solvation = -4059.068227 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -49.87599 -40.94490 -39.96534 -38.45602 -36.63330 -35.33082 -33.89461 -33.07980 -31.42489 -31.05649 -29.25358 -27.97805 -27.26765 -26.05421 -24.89485 -23.68557 -23.35047 -21.83783 -21.08101 -20.41505 -18.80191 -18.53546 -17.94094 -17.42630 -17.17683 -17.00369 -16.60698 -16.50228 -16.31324 -15.88340 -15.30369 -15.18929 -14.98886 -14.63422 -14.51574 -14.35758 -14.11374 -13.92350 -13.82232 -13.61114 -13.55083 -13.30295 -13.13480 -12.79299 -12.71644 -12.57849 -12.56865 -12.48469 -12.41479 -12.27083 -12.11234 -12.07302 -11.72176 -11.66569 -11.61111 -11.46635 -10.69273 -10.55372 -9.86935 -9.86313 -9.55865 -8.72867 -7.72956 -5.22458 0.22554 0.29691 1.51352 1.54778 1.59184 1.73158 2.42897 2.55974 2.69263 3.37024 3.40268 3.59200 3.66313 3.80079 3.80962 3.94923 4.06298 4.09073 4.16647 4.32526 4.39432 4.42503 4.48696 4.49939 4.55719 4.62684 4.70262 4.73381 4.82986 4.85053 4.90982 4.94275 5.02355 5.05692 5.09366 5.15534 5.25025 5.28287 5.31710 5.34142 5.38000 5.47763 5.49705 5.51619 5.66697 5.74104 5.77096 6.00643 6.39208 6.74408 7.21969 7.36565 7.92896 8.39664 9.27826 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.014713 B = 0.002678 C = 0.002446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1902.608669 B =10451.432530 C =11443.611545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.157 3.843 3 H 0.075 0.925 4 C 0.113 3.887 5 N -0.701 5.701 6 C 0.508 3.492 7 O -0.596 6.596 8 C -0.098 4.098 9 H 0.121 0.879 10 C -0.132 4.132 11 C -0.079 4.079 12 C -0.077 4.077 13 C -0.126 4.126 14 C -0.095 4.095 15 C -0.127 4.127 16 C -0.097 4.097 17 C -0.164 4.164 18 C 0.065 3.935 19 F -0.155 7.155 20 N -0.601 5.601 21 C 0.183 3.817 22 C -0.261 4.261 23 H 0.072 0.928 24 C -0.038 4.038 25 N -0.924 5.924 26 Si 0.957 3.043 27 H -0.288 1.288 28 H -0.302 1.302 29 H -0.273 1.273 30 H 0.054 0.946 31 H 0.076 0.924 32 H 0.045 0.955 33 H 0.068 0.932 34 H 0.035 0.965 35 H 0.411 0.589 36 H 0.034 0.966 37 H 0.085 0.915 38 H 0.052 0.948 39 H 0.039 0.961 40 H 0.066 0.934 41 H 0.103 0.897 42 H 0.073 0.927 43 H 0.153 0.847 44 H 0.159 0.841 45 H 0.160 0.840 46 H 0.143 0.857 47 H -0.001 1.001 48 H 0.015 0.985 49 H 0.019 0.981 50 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.525 1.355 -17.523 20.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.050 3.950 3 H 0.093 0.907 4 C -0.013 4.013 5 N -0.350 5.350 6 C 0.295 3.705 7 O -0.478 6.478 8 C -0.119 4.119 9 H 0.139 0.861 10 C -0.190 4.190 11 C -0.117 4.117 12 C -0.114 4.114 13 C -0.127 4.127 14 C -0.112 4.112 15 C -0.144 4.144 16 C -0.115 4.115 17 C -0.183 4.183 18 C 0.046 3.954 19 F -0.134 7.134 20 N -0.324 5.324 21 C 0.038 3.962 22 C -0.391 4.391 23 H 0.090 0.910 24 C -0.234 4.234 25 N -0.570 5.570 26 Si 0.787 3.213 27 H -0.215 1.215 28 H -0.229 1.229 29 H -0.198 1.198 30 H 0.073 0.927 31 H 0.095 0.905 32 H 0.064 0.936 33 H 0.086 0.914 34 H 0.054 0.946 35 H 0.247 0.753 36 H 0.053 0.947 37 H 0.104 0.896 38 H 0.072 0.928 39 H 0.058 0.942 40 H 0.085 0.915 41 H 0.122 0.878 42 H 0.092 0.908 43 H 0.171 0.829 44 H 0.176 0.824 45 H 0.177 0.823 46 H 0.161 0.839 47 H 0.017 0.983 48 H 0.034 0.966 49 H 0.037 0.963 50 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 10.154 0.909 -18.013 20.698 hybrid contribution 0.246 -0.349 1.903 1.950 sum 10.401 0.561 -16.111 19.184 Atomic orbital electron populations 1.22064 0.95282 1.01502 1.02005 1.20828 0.94132 0.95584 0.84465 0.90711 1.21840 0.80402 0.99811 0.99261 1.45939 1.08103 1.57969 1.23018 1.21141 0.91200 0.76600 0.81552 1.90598 1.71555 1.50200 1.35494 1.21281 0.90278 1.02887 0.97497 0.86084 1.21676 1.02522 0.99037 0.95725 1.21183 0.94653 0.99582 0.96251 1.20615 0.94103 1.01879 0.94817 1.20140 1.02154 0.91707 0.98703 1.21324 0.96893 1.01313 0.91718 1.21624 0.99185 0.94788 0.98845 1.21389 0.97691 0.94449 0.97968 1.21425 1.02166 1.01792 0.92918 1.18074 1.02067 0.90021 0.85240 1.91462 1.88448 1.78617 1.54893 1.44033 1.57761 1.09222 1.21376 1.20394 0.93836 0.84924 0.97049 1.19420 1.15531 0.91386 1.12721 0.91028 1.25587 0.98908 0.96630 1.02315 1.70230 1.39670 1.08371 1.38743 0.85508 0.78050 0.77497 0.80254 1.21500 1.22895 1.19832 0.92704 0.90534 0.93558 0.91401 0.94636 0.75288 0.94695 0.89613 0.92842 0.94197 0.91501 0.87842 0.90849 0.82933 0.82368 0.82269 0.83946 0.98266 0.96628 0.96308 0.94610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.66 9.18 71.98 0.66 -4.00 16 2 C 0.16 5.81 2.87 44.99 0.13 5.94 16 3 H 0.07 2.68 7.87 -2.39 -0.02 2.66 16 4 C 0.11 4.21 4.97 86.38 0.43 4.64 16 5 N -0.70 -26.89 5.28 -463.06 -2.45 -29.33 16 6 C 0.51 19.27 7.15 87.66 0.63 19.89 16 7 O -0.60 -26.17 15.92 -3.02 -0.05 -26.22 16 8 C -0.10 -2.96 2.73 -11.54 -0.03 -2.99 16 9 H 0.12 2.95 8.14 -2.38 -0.02 2.93 16 10 C -0.13 -4.29 8.84 71.98 0.64 -3.66 16 11 C -0.08 -2.22 4.01 30.59 0.12 -2.10 16 12 C -0.08 -1.70 4.83 29.85 0.14 -1.56 16 13 C -0.13 -2.77 5.14 -19.82 -0.10 -2.88 16 14 C -0.09 -1.55 9.67 22.26 0.22 -1.33 16 15 C -0.13 -1.66 10.04 22.27 0.22 -1.44 16 16 C -0.10 -1.35 10.04 22.26 0.22 -1.13 16 17 C -0.16 -3.15 10.03 22.31 0.22 -2.92 16 18 C 0.06 1.60 7.24 22.38 0.16 1.76 16 19 F -0.16 -4.59 16.66 44.97 0.75 -3.84 16 20 N -0.60 -27.39 2.29 -702.78 -1.61 -29.00 16 21 C 0.18 8.87 8.11 127.77 1.04 9.90 16 22 C -0.26 -12.89 9.32 84.03 0.78 -12.10 16 23 H 0.07 3.43 7.82 -2.91 -0.02 3.40 16 24 C -0.04 -1.96 5.12 84.86 0.43 -1.52 16 25 N -0.92 -50.75 10.65 21.65 0.23 -50.52 16 26 Si 0.96 42.41 29.57 68.60 2.03 44.43 16 27 H -0.29 -12.78 7.11 99.48 0.71 -12.08 16 28 H -0.30 -13.85 7.11 99.48 0.71 -13.14 16 29 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 30 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 31 H 0.08 1.93 8.14 -2.38 -0.02 1.91 16 32 H 0.05 1.49 6.66 -2.39 -0.02 1.48 16 33 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 34 H 0.04 1.47 7.84 -2.38 -0.02 1.45 16 35 H 0.41 16.46 7.31 -92.71 -0.68 15.79 16 36 H 0.03 1.27 8.14 -2.38 -0.02 1.25 16 37 H 0.09 2.31 6.56 -2.39 -0.02 2.29 16 38 H 0.05 2.01 7.56 -2.39 -0.02 1.99 16 39 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 40 H 0.07 1.92 7.95 -2.39 -0.02 1.90 16 41 H 0.10 1.73 8.01 -2.39 -0.02 1.71 16 42 H 0.07 1.72 6.36 -2.39 -0.02 1.70 16 43 H 0.15 1.76 8.04 -2.91 -0.02 1.74 16 44 H 0.16 1.08 8.06 -2.91 -0.02 1.05 16 45 H 0.16 1.20 8.06 -2.91 -0.02 1.18 16 46 H 0.14 2.29 8.06 -2.91 -0.02 2.27 16 47 H 0.00 -0.05 7.41 -2.38 -0.02 -0.07 16 48 H 0.01 0.80 7.23 -2.39 -0.02 0.78 16 49 H 0.02 0.81 6.43 -2.39 -0.02 0.79 16 50 H 0.24 13.42 8.31 -92.71 -0.77 12.65 16 Total: -1.00 -64.87 405.37 5.07 -59.80 By element: Atomic # 1 Polarization: 29.93 SS G_CDS: 0.25 Total: 30.18 kcal Atomic # 6 Polarization: -1.41 SS G_CDS: 5.92 Total: 4.50 kcal Atomic # 7 Polarization: -105.03 SS G_CDS: -3.82 Total: -108.86 kcal Atomic # 8 Polarization: -26.17 SS G_CDS: -0.05 Total: -26.22 kcal Atomic # 9 Polarization: -4.59 SS G_CDS: 0.75 Total: -3.84 kcal Atomic # 14 Polarization: 42.41 SS G_CDS: 2.03 Total: 44.43 kcal Total: -64.87 5.07 -59.80 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755314872.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.730 kcal (2) G-P(sol) polarization free energy of solvation -64.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds