Wall clock time and date at job start Tue Mar 31 2020 20:56:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34224 * 117.00524 * 2 1 4 4 O 1.20830 * 119.99919 * 359.97438 * 3 2 1 5 5 C 1.50704 * 120.00447 * 180.02562 * 3 2 1 6 6 C 1.52998 * 110.26838 * 302.08559 * 5 3 2 7 7 C 1.54598 * 110.30842 * 64.27901 * 5 3 2 8 8 C 1.54939 * 102.91642 * 140.87512 * 7 5 3 9 9 N 1.48529 * 103.23204 * 322.58547 * 8 7 5 10 10 C 1.38576 * 111.00381 * 159.72157 * 9 8 7 11 11 N 1.31217 * 126.47399 * 242.64751 * 10 9 8 12 12 N 1.28533 * 109.85927 * 179.68994 * 11 10 9 13 13 C 1.30293 * 110.05330 * 0.45524 * 12 11 10 14 14 C 1.50697 * 126.34929 * 179.82172 * 13 12 11 15 15 H 1.09000 * 109.47374 * 179.68458 * 14 13 12 16 16 C 1.53006 * 109.47239 * 59.68321 * 14 13 12 17 17 C 1.52999 * 109.46961 * 299.68959 * 14 13 12 18 18 C 1.50704 * 109.47295 * 185.00174 * 17 14 13 19 19 H 1.08002 * 119.99563 * 359.97438 * 18 17 14 20 20 C 1.37872 * 120.00100 * 179.97438 * 18 17 14 21 21 N 1.31522 * 120.00222 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99904 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47134 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.47008 * 120.00055 * 22 20 18 25 25 H 1.48498 * 109.47186 * 240.00307 * 22 20 18 26 26 N 1.36456 * 126.47085 * 62.60226 * 10 9 8 27 27 C 1.46500 * 127.13842 * 0.02562 * 26 10 9 28 28 C 1.47901 * 105.81785 * 39.20370 * 9 8 7 29 29 H 1.08998 * 109.46977 * 300.00260 * 1 2 3 30 30 H 1.08997 * 109.46745 * 60.00211 * 1 2 3 31 31 H 1.08996 * 109.47238 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47078 * 297.90791 * 6 5 3 33 33 H 1.08998 * 109.47404 * 57.91077 * 6 5 3 34 34 H 1.09006 * 109.46769 * 177.91139 * 6 5 3 35 35 H 1.09001 * 110.72302 * 259.22922 * 7 5 3 36 36 H 1.08993 * 110.72616 * 22.33961 * 7 5 3 37 37 H 1.09005 * 110.66415 * 204.14814 * 8 7 5 38 38 H 1.09002 * 110.66612 * 81.02167 * 8 7 5 39 39 H 1.09001 * 109.47002 * 60.00070 * 16 14 13 40 40 H 1.08993 * 109.46955 * 180.02562 * 16 14 13 41 41 H 1.09000 * 109.47050 * 300.00336 * 16 14 13 42 42 H 1.09000 * 109.46738 * 304.99669 * 17 14 13 43 43 H 1.08994 * 109.47465 * 64.99756 * 17 14 13 44 44 H 0.96995 * 119.99658 * 179.97438 * 21 20 18 45 45 H 1.09000 * 109.47288 * 270.02782 * 27 26 10 46 46 H 1.09002 * 109.46895 * 30.02672 * 27 26 10 47 47 H 1.09001 * 109.46924 * 150.02366 * 27 26 10 48 48 H 1.09011 * 109.91264 * 94.02566 * 28 9 8 49 49 H 1.08998 * 109.92191 * 215.11528 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4035 2.2093 -0.0005 5 6 3.5664 1.2747 -0.0006 6 6 4.1361 0.5409 1.2151 7 6 4.1347 0.6747 -1.3072 8 6 5.3050 1.6314 -1.6473 9 7 4.7806 2.9638 -1.2528 10 6 5.8139 3.8664 -1.0578 11 7 6.1203 4.4704 0.0661 12 7 7.1385 5.2343 -0.1122 13 6 7.5328 5.1709 -1.3524 14 6 8.6903 5.9197 -1.9611 15 1 8.7781 5.6581 -3.0156 16 6 9.9817 5.5420 -1.2326 17 6 8.4509 7.4249 -1.8271 18 6 9.5457 8.1734 -2.5428 19 1 10.3338 7.6298 -3.0427 20 6 9.5414 9.5520 -2.5592 21 7 8.5820 10.2140 -1.9500 22 14 10.8989 10.4798 -3.4457 23 1 11.8508 9.5105 -4.0454 24 1 10.3063 11.3189 -4.5181 25 1 11.6185 11.3474 -2.4789 26 7 6.7054 4.2943 -1.9980 27 6 6.7641 3.8968 -3.4069 28 6 4.0246 2.7449 -0.0006 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 3.7854 1.0229 2.1277 33 1 3.8037 -0.4971 1.2016 34 1 5.2251 0.5742 1.1820 35 1 4.5008 -0.3381 -1.1392 36 1 3.3824 0.6856 -2.0957 37 1 5.5255 1.6052 -2.7145 38 1 6.1905 1.3784 -1.0642 39 1 10.1523 4.4697 -1.3280 40 1 10.8188 6.0840 -1.6726 41 1 9.8939 5.8036 -0.1781 42 1 7.4876 7.6802 -2.2688 43 1 8.4516 7.7005 -0.7726 44 1 8.5792 11.1839 -1.9613 45 1 7.4080 3.0236 -3.5115 46 1 5.7612 3.6529 -3.7576 47 1 7.1665 4.7182 -3.9997 48 1 4.6677 2.9334 0.8592 49 1 3.1591 3.4067 0.0312 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001772173060.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:56:40 Heat of formation + Delta-G solvation = -0.352410 kcal Electronic energy + Delta-G solvation = -29801.600603 eV Core-core repulsion = 25765.538771 eV Total energy + Delta-G solvation = -4036.061832 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.67137 -41.23761 -39.14111 -36.76623 -35.40981 -34.79072 -33.70356 -32.13284 -30.38613 -28.40046 -28.09004 -27.40706 -26.92345 -26.55674 -24.11761 -23.83306 -22.48848 -21.91816 -20.64854 -20.01262 -18.95499 -17.81247 -17.39970 -17.07488 -16.66771 -16.52378 -16.02759 -15.69778 -15.31132 -14.52731 -14.51249 -14.06652 -13.94754 -13.67739 -13.46820 -13.24800 -13.09887 -13.08940 -12.84364 -12.76789 -12.43762 -12.38359 -12.32843 -12.12531 -11.76875 -11.45321 -11.30420 -11.24040 -11.15602 -11.01254 -10.92581 -10.71167 -10.61336 -10.46441 -10.33644 -9.96175 -9.82399 -9.73948 -9.25866 -9.09230 -8.36215 -7.98815 -5.99298 -4.03207 1.85500 2.08171 2.24655 2.50314 3.27284 3.31120 3.38821 3.41343 3.69606 3.85388 3.99603 4.34298 4.44386 4.54811 4.65323 4.73766 4.77794 4.81074 4.83933 4.95693 5.09673 5.11575 5.14023 5.18435 5.29776 5.35478 5.37467 5.37905 5.40588 5.46814 5.53368 5.67758 5.76291 5.79260 5.98492 6.04468 6.09999 6.17607 6.27819 6.45355 6.69626 6.78165 6.90204 7.04382 7.37667 7.39665 7.64351 7.79864 8.00118 8.35564 9.02732 9.21672 9.60366 11.11731 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.026983 B = 0.002268 C = 0.002225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.433929 B =12341.689458 C =12583.260724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.356 6.356 3 C 0.475 3.525 4 O -0.494 6.494 5 C -0.064 4.064 6 C -0.139 4.139 7 C -0.104 4.104 8 C 0.035 3.965 9 N -0.430 5.430 10 C 0.323 3.677 11 N -0.320 5.320 12 N -0.283 5.283 13 C 0.216 3.784 14 C -0.002 4.002 15 H 0.072 0.928 16 C -0.125 4.125 17 C 0.037 3.963 18 C -0.520 4.520 19 H 0.059 0.941 20 C 0.058 3.942 21 N -0.889 5.889 22 Si 0.892 3.108 23 H -0.273 1.273 24 H -0.285 1.285 25 H -0.284 1.284 26 N -0.483 5.483 27 C 0.076 3.924 28 C 0.057 3.943 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.102 0.898 32 H 0.068 0.932 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.095 0.905 36 H 0.084 0.916 37 H 0.094 0.906 38 H 0.061 0.939 39 H 0.030 0.970 40 H 0.075 0.925 41 H 0.060 0.940 42 H 0.014 0.986 43 H 0.032 0.968 44 H 0.261 0.739 45 H 0.074 0.926 46 H 0.089 0.911 47 H 0.096 0.904 48 H 0.093 0.907 49 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.237 -26.454 -0.096 28.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.272 6.272 3 C 0.317 3.683 4 O -0.380 6.380 5 C -0.066 4.066 6 C -0.196 4.196 7 C -0.142 4.142 8 C -0.092 4.092 9 N -0.153 5.153 10 C -0.034 4.034 11 N -0.164 5.164 12 N -0.120 5.120 13 C -0.051 4.051 14 C -0.023 4.023 15 H 0.090 0.910 16 C -0.183 4.183 17 C -0.001 4.001 18 C -0.558 4.558 19 H 0.077 0.923 20 C -0.144 4.144 21 N -0.528 5.528 22 Si 0.720 3.280 23 H -0.197 1.197 24 H -0.211 1.211 25 H -0.210 1.210 26 N -0.178 5.178 27 C -0.067 4.067 28 C -0.070 4.070 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.120 0.880 32 H 0.087 0.913 33 H 0.093 0.907 34 H 0.093 0.907 35 H 0.113 0.887 36 H 0.103 0.897 37 H 0.112 0.888 38 H 0.080 0.920 39 H 0.049 0.951 40 H 0.094 0.906 41 H 0.080 0.920 42 H 0.032 0.968 43 H 0.051 0.949 44 H 0.070 0.930 45 H 0.093 0.907 46 H 0.107 0.893 47 H 0.115 0.885 48 H 0.111 0.889 49 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -11.947 -25.359 0.987 28.049 hybrid contribution 0.702 0.107 -1.464 1.627 sum -11.245 -25.252 -0.477 27.647 Atomic orbital electron populations 1.23300 0.76189 1.03736 1.02763 1.86487 1.23452 1.33163 1.84125 1.23353 0.91384 0.81418 0.72148 1.90692 1.66648 1.36240 1.44431 1.21354 0.87702 0.98211 0.99299 1.21918 1.01916 1.00473 0.95309 1.22574 0.97534 0.99120 0.94998 1.23444 0.97037 0.86444 1.02301 1.61533 1.16342 1.06648 1.30826 1.22486 0.92477 1.01634 0.86765 1.74466 1.11406 1.11422 1.19097 1.74008 1.06970 1.17016 1.14019 1.25624 0.96339 0.93301 0.89863 1.19996 0.87329 0.97808 0.97148 0.90955 1.21669 0.96796 0.98454 1.01377 1.19120 0.97049 0.85172 0.98726 1.21172 1.09606 0.91195 1.33876 0.92276 1.25018 0.95894 0.97860 0.95591 1.69998 1.32382 1.07426 1.42999 0.86544 0.82060 0.79966 0.79453 1.19715 1.21124 1.20982 1.46107 1.25519 1.35386 1.10800 1.22056 1.04067 1.02238 0.78359 1.23022 0.99902 0.93201 0.90838 0.91784 0.91783 0.88001 0.91309 0.90708 0.90678 0.88672 0.89713 0.88803 0.92029 0.95055 0.90650 0.92045 0.96765 0.94939 0.92963 0.90744 0.89280 0.88516 0.88925 0.87001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 10.56 101.05 1.07 1.27 16 2 O -0.36 -3.03 10.42 -39.24 -0.41 -3.44 16 3 C 0.48 4.99 6.47 36.01 0.23 5.22 16 4 O -0.49 -6.79 14.99 -18.75 -0.28 -7.07 16 5 C -0.06 -0.59 0.90 -154.30 -0.14 -0.73 16 6 C -0.14 -1.00 8.14 37.16 0.30 -0.70 16 7 C -0.10 -0.76 6.15 -24.87 -0.15 -0.91 16 8 C 0.03 0.32 6.03 -1.90 -0.01 0.31 16 9 N -0.43 -5.71 5.32 -170.55 -0.91 -6.62 16 10 C 0.32 5.46 7.04 -318.88 -2.24 3.22 16 11 N -0.32 -6.47 10.70 30.31 0.32 -6.15 16 12 N -0.28 -6.29 12.18 32.99 0.40 -5.89 16 13 C 0.22 4.33 6.58 -154.01 -1.01 3.32 16 14 C 0.00 -0.03 2.70 -91.77 -0.25 -0.28 16 15 H 0.07 1.34 6.94 -51.93 -0.36 0.98 16 16 C -0.12 -2.34 8.99 37.16 0.33 -2.00 16 17 C 0.04 0.97 4.43 -27.88 -0.12 0.84 16 18 C -0.52 -14.14 8.41 -34.44 -0.29 -14.43 16 19 H 0.06 1.52 7.06 -52.49 -0.37 1.15 16 20 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 21 N -0.89 -26.89 13.29 55.43 0.74 -26.15 16 22 Si 0.89 21.28 29.54 -169.99 -5.02 16.26 16 23 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 24 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 25 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 26 N -0.48 -7.98 3.21 -121.46 -0.39 -8.37 16 27 C 0.08 0.87 9.78 59.85 0.59 1.45 16 28 C 0.06 0.73 5.74 -2.76 -0.02 0.71 16 29 H 0.06 0.40 8.13 -51.93 -0.42 -0.02 16 30 H 0.06 0.41 8.13 -51.93 -0.42 -0.02 16 31 H 0.10 0.33 8.14 -51.93 -0.42 -0.10 16 32 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.07 0.43 8.07 -51.93 -0.42 0.01 16 34 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 35 H 0.09 0.47 7.86 -51.93 -0.41 0.06 16 36 H 0.08 0.61 7.85 -51.93 -0.41 0.20 16 37 H 0.09 0.71 7.25 -51.93 -0.38 0.33 16 38 H 0.06 0.58 7.99 -51.93 -0.42 0.17 16 39 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 40 H 0.07 1.42 6.95 -51.93 -0.36 1.06 16 41 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 42 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.03 0.93 8.14 -51.93 -0.42 0.51 16 44 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 45 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 46 H 0.09 0.87 7.94 -51.93 -0.41 0.46 16 47 H 0.10 1.11 7.23 -51.93 -0.38 0.74 16 48 H 0.09 1.28 6.38 -51.92 -0.33 0.95 16 49 H 0.11 1.66 6.44 -51.93 -0.33 1.32 16 LS Contribution 396.01 15.07 5.97 5.97 Total: -1.00 -35.73 396.01 -9.32 -45.05 By element: Atomic # 1 Polarization: 5.49 SS G_CDS: -7.93 Total: -2.44 kcal Atomic # 6 Polarization: 0.66 SS G_CDS: -1.81 Total: -1.15 kcal Atomic # 7 Polarization: -53.34 SS G_CDS: 0.17 Total: -53.18 kcal Atomic # 8 Polarization: -9.82 SS G_CDS: -0.69 Total: -10.51 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -35.73 -9.32 -45.05 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001772173060.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.699 kcal (2) G-P(sol) polarization free energy of solvation -35.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds