Wall clock time and date at job start Tue Mar 31 2020 20:56:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34224 * 117.00524 * 2 1 4 4 O 1.20830 * 119.99919 * 359.97438 * 3 2 1 5 5 C 1.50704 * 120.00447 * 180.02562 * 3 2 1 6 6 C 1.52998 * 110.26838 * 302.08559 * 5 3 2 7 7 C 1.54598 * 110.30842 * 64.27901 * 5 3 2 8 8 C 1.54939 * 102.91642 * 140.87512 * 7 5 3 9 9 N 1.48529 * 103.23204 * 322.58547 * 8 7 5 10 10 C 1.38576 * 111.00381 * 159.72157 * 9 8 7 11 11 N 1.31217 * 126.47399 * 242.64751 * 10 9 8 12 12 N 1.28533 * 109.85927 * 179.68994 * 11 10 9 13 13 C 1.30293 * 110.05330 * 0.45524 * 12 11 10 14 14 C 1.50697 * 126.34929 * 179.82172 * 13 12 11 15 15 H 1.09000 * 109.47374 * 179.68458 * 14 13 12 16 16 C 1.53006 * 109.47239 * 59.68321 * 14 13 12 17 17 C 1.52999 * 109.46961 * 299.68959 * 14 13 12 18 18 C 1.50704 * 109.47295 * 185.00174 * 17 14 13 19 19 H 1.08002 * 119.99563 * 359.97438 * 18 17 14 20 20 C 1.37872 * 120.00100 * 179.97438 * 18 17 14 21 21 N 1.31522 * 120.00222 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99904 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47134 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.47008 * 120.00055 * 22 20 18 25 25 H 1.48498 * 109.47186 * 240.00307 * 22 20 18 26 26 N 1.36456 * 126.47085 * 62.60226 * 10 9 8 27 27 C 1.46500 * 127.13842 * 0.02562 * 26 10 9 28 28 C 1.47901 * 105.81785 * 39.20370 * 9 8 7 29 29 H 1.08998 * 109.46977 * 300.00260 * 1 2 3 30 30 H 1.08997 * 109.46745 * 60.00211 * 1 2 3 31 31 H 1.08996 * 109.47238 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47078 * 297.90791 * 6 5 3 33 33 H 1.08998 * 109.47404 * 57.91077 * 6 5 3 34 34 H 1.09006 * 109.46769 * 177.91139 * 6 5 3 35 35 H 1.09001 * 110.72302 * 259.22922 * 7 5 3 36 36 H 1.08993 * 110.72616 * 22.33961 * 7 5 3 37 37 H 1.09005 * 110.66415 * 204.14814 * 8 7 5 38 38 H 1.09002 * 110.66612 * 81.02167 * 8 7 5 39 39 H 1.09001 * 109.47002 * 60.00070 * 16 14 13 40 40 H 1.08993 * 109.46955 * 180.02562 * 16 14 13 41 41 H 1.09000 * 109.47050 * 300.00336 * 16 14 13 42 42 H 1.09000 * 109.46738 * 304.99669 * 17 14 13 43 43 H 1.08994 * 109.47465 * 64.99756 * 17 14 13 44 44 H 0.96995 * 119.99658 * 179.97438 * 21 20 18 45 45 H 1.09000 * 109.47288 * 270.02782 * 27 26 10 46 46 H 1.09002 * 109.46895 * 30.02672 * 27 26 10 47 47 H 1.09001 * 109.46924 * 150.02366 * 27 26 10 48 48 H 1.09011 * 109.91264 * 94.02566 * 28 9 8 49 49 H 1.08998 * 109.92191 * 215.11528 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4035 2.2093 -0.0005 5 6 3.5664 1.2747 -0.0006 6 6 4.1361 0.5409 1.2151 7 6 4.1347 0.6747 -1.3072 8 6 5.3050 1.6314 -1.6473 9 7 4.7806 2.9638 -1.2528 10 6 5.8139 3.8664 -1.0578 11 7 6.1203 4.4704 0.0661 12 7 7.1385 5.2343 -0.1122 13 6 7.5328 5.1709 -1.3524 14 6 8.6903 5.9197 -1.9611 15 1 8.7781 5.6581 -3.0156 16 6 9.9817 5.5420 -1.2326 17 6 8.4509 7.4249 -1.8271 18 6 9.5457 8.1734 -2.5428 19 1 10.3338 7.6298 -3.0427 20 6 9.5414 9.5520 -2.5592 21 7 8.5820 10.2140 -1.9500 22 14 10.8989 10.4798 -3.4457 23 1 11.8508 9.5105 -4.0454 24 1 10.3063 11.3189 -4.5181 25 1 11.6185 11.3474 -2.4789 26 7 6.7054 4.2943 -1.9980 27 6 6.7641 3.8968 -3.4069 28 6 4.0246 2.7449 -0.0006 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 3.7854 1.0229 2.1277 33 1 3.8037 -0.4971 1.2016 34 1 5.2251 0.5742 1.1820 35 1 4.5008 -0.3381 -1.1392 36 1 3.3824 0.6856 -2.0957 37 1 5.5255 1.6052 -2.7145 38 1 6.1905 1.3784 -1.0642 39 1 10.1523 4.4697 -1.3280 40 1 10.8188 6.0840 -1.6726 41 1 9.8939 5.8036 -0.1781 42 1 7.4876 7.6802 -2.2688 43 1 8.4516 7.7005 -0.7726 44 1 8.5792 11.1839 -1.9613 45 1 7.4080 3.0236 -3.5115 46 1 5.7612 3.6529 -3.7576 47 1 7.1665 4.7182 -3.9997 48 1 4.6677 2.9334 0.8592 49 1 3.1591 3.4067 0.0312 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001772173060.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:56:40 Heat of formation + Delta-G solvation = -21.867730 kcal Electronic energy + Delta-G solvation = -29802.533578 eV Core-core repulsion = 25765.538771 eV Total energy + Delta-G solvation = -4036.994806 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -44.05022 -42.06796 -40.02431 -37.58129 -37.11013 -36.01555 -34.89829 -34.02484 -31.27278 -29.74381 -28.84956 -28.67702 -28.43080 -27.38452 -25.90571 -24.74999 -23.68984 -23.23273 -21.84348 -21.01901 -20.30857 -18.69079 -18.59696 -18.32739 -17.97459 -17.43249 -17.22845 -17.04482 -16.49354 -16.18815 -15.49040 -15.30854 -14.98790 -14.61540 -14.50119 -14.42692 -14.27694 -14.02843 -13.93981 -13.73250 -13.55894 -13.49350 -13.16641 -13.07444 -12.95102 -12.89461 -12.77614 -12.62769 -12.40271 -12.24293 -12.14256 -11.97808 -11.89017 -11.83364 -11.51489 -11.51008 -11.35425 -11.15512 -11.12313 -10.66080 -10.55818 -9.35091 -8.16032 -6.28147 0.75734 1.05269 1.20559 1.43988 1.44975 1.57825 1.60790 1.81192 2.43824 2.63087 3.03914 3.18054 3.24394 3.48954 3.65935 3.73510 3.86828 3.93047 4.00121 4.09826 4.22656 4.30644 4.31496 4.32320 4.41188 4.44424 4.52200 4.59895 4.60290 4.67448 4.70773 4.74940 4.77079 4.82528 4.85209 4.96525 5.01399 5.11420 5.15248 5.18790 5.29880 5.36594 5.41893 5.46085 5.49425 5.70576 5.84136 6.13021 6.20823 6.62144 6.88568 7.41324 7.76903 8.96747 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.026983 B = 0.002268 C = 0.002225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.433929 B =12341.689458 C =12583.260724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.349 6.349 3 C 0.479 3.521 4 O -0.536 6.536 5 C -0.058 4.058 6 C -0.135 4.135 7 C -0.093 4.093 8 C 0.033 3.967 9 N -0.434 5.434 10 C 0.342 3.658 11 N -0.362 5.362 12 N -0.327 5.327 13 C 0.201 3.799 14 C 0.010 3.990 15 H 0.099 0.901 16 C -0.116 4.116 17 C 0.048 3.952 18 C -0.525 4.525 19 H 0.080 0.920 20 C -0.006 4.006 21 N -0.939 5.939 22 Si 0.969 3.031 23 H -0.250 1.250 24 H -0.283 1.283 25 H -0.285 1.285 26 N -0.479 5.479 27 C 0.064 3.936 28 C 0.057 3.943 29 H 0.058 0.942 30 H 0.059 0.941 31 H 0.137 0.863 32 H 0.058 0.942 33 H 0.098 0.902 34 H 0.079 0.921 35 H 0.131 0.869 36 H 0.089 0.911 37 H 0.119 0.881 38 H 0.064 0.936 39 H 0.065 0.935 40 H 0.074 0.926 41 H 0.038 0.962 42 H -0.024 1.024 43 H -0.012 1.012 44 H 0.261 0.739 45 H 0.112 0.888 46 H 0.107 0.893 47 H 0.095 0.905 48 H 0.076 0.924 49 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.163 -30.151 -2.489 31.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.264 6.264 3 C 0.322 3.678 4 O -0.425 6.425 5 C -0.060 4.060 6 C -0.192 4.192 7 C -0.131 4.131 8 C -0.093 4.093 9 N -0.159 5.159 10 C -0.015 4.015 11 N -0.206 5.206 12 N -0.165 5.165 13 C -0.068 4.068 14 C -0.011 4.011 15 H 0.117 0.883 16 C -0.174 4.174 17 C 0.010 3.990 18 C -0.563 4.563 19 H 0.098 0.902 20 C -0.204 4.204 21 N -0.579 5.579 22 Si 0.794 3.206 23 H -0.173 1.173 24 H -0.209 1.209 25 H -0.211 1.211 26 N -0.173 5.173 27 C -0.076 4.076 28 C -0.071 4.071 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.155 0.845 32 H 0.077 0.923 33 H 0.117 0.883 34 H 0.098 0.902 35 H 0.149 0.851 36 H 0.108 0.892 37 H 0.137 0.863 38 H 0.083 0.917 39 H 0.084 0.916 40 H 0.093 0.907 41 H 0.057 0.943 42 H -0.006 1.006 43 H 0.006 0.994 44 H 0.070 0.930 45 H 0.130 0.870 46 H 0.125 0.875 47 H 0.114 0.886 48 H 0.095 0.905 49 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -10.867 -29.121 -1.434 31.116 hybrid contribution 0.178 1.169 -0.715 1.382 sum -10.689 -27.952 -2.149 30.003 Atomic orbital electron populations 1.23589 0.74780 1.05937 1.02375 1.86477 1.24781 1.31720 1.83448 1.23586 0.91815 0.81384 0.70991 1.90687 1.67594 1.37705 1.46523 1.21329 0.87122 0.95948 1.01647 1.21932 1.02099 1.01335 0.93835 1.22653 0.96682 1.00158 0.93558 1.23680 0.97815 0.84013 1.03795 1.61653 1.15145 1.08400 1.30668 1.22841 0.91892 1.00758 0.86041 1.74367 1.11997 1.12919 1.21299 1.73893 1.08345 1.18329 1.15936 1.25350 0.97063 0.94561 0.89819 1.19758 0.88491 0.93854 0.99021 0.88300 1.21577 0.95624 1.00623 0.99625 1.18868 0.95132 0.89595 0.95369 1.21618 1.09894 0.91613 1.33188 0.90215 1.26075 0.98511 0.99269 0.96500 1.70178 1.34982 1.07704 1.45081 0.85335 0.78850 0.78548 0.77911 1.17322 1.20891 1.21075 1.46257 1.24318 1.34341 1.12387 1.22506 1.06207 1.03634 0.75290 1.22906 0.98419 0.95524 0.90204 0.92302 0.92181 0.84461 0.92252 0.88287 0.90168 0.85075 0.89192 0.86286 0.91745 0.91599 0.90692 0.94298 1.00602 0.99399 0.93040 0.86974 0.87464 0.88634 0.90540 0.89954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.56 113.37 1.20 1.47 16 2 O -0.35 -5.19 10.42 -51.36 -0.54 -5.72 16 3 C 0.48 9.64 6.47 71.24 0.46 10.10 16 4 O -0.54 -15.13 14.99 21.95 0.33 -14.80 16 5 C -0.06 -0.99 0.90 -52.05 -0.05 -1.04 16 6 C -0.13 -1.69 8.14 71.98 0.59 -1.10 16 7 C -0.09 -1.01 6.15 31.80 0.20 -0.82 16 8 C 0.03 0.49 6.03 86.65 0.52 1.01 16 9 N -0.43 -11.17 5.32 -693.49 -3.69 -14.86 16 10 C 0.34 11.60 7.04 260.11 1.83 13.43 16 11 N -0.36 -15.32 10.70 -58.01 -0.62 -15.94 16 12 N -0.33 -15.31 12.18 -49.54 -0.60 -15.92 16 13 C 0.20 8.21 6.58 137.64 0.91 9.11 16 14 C 0.01 0.40 2.70 -11.54 -0.03 0.36 16 15 H 0.10 3.48 6.94 -2.39 -0.02 3.46 16 16 C -0.12 -4.28 8.99 71.98 0.65 -3.63 16 17 C 0.05 2.63 4.43 29.85 0.13 2.76 16 18 C -0.53 -28.80 8.41 25.60 0.22 -28.59 16 19 H 0.08 3.97 7.06 -2.91 -0.02 3.94 16 20 C -0.01 -0.36 5.46 84.65 0.46 0.10 16 21 N -0.94 -58.98 13.29 21.45 0.28 -58.69 16 22 Si 0.97 43.74 29.54 68.60 2.03 45.76 16 23 H -0.25 -10.29 7.11 99.48 0.71 -9.58 16 24 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 25 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 26 N -0.48 -15.39 3.21 -538.18 -1.73 -17.12 16 27 C 0.06 1.28 9.78 127.77 1.25 2.53 16 28 C 0.06 1.48 5.74 86.44 0.50 1.97 16 29 H 0.06 0.70 8.13 -2.39 -0.02 0.68 16 30 H 0.06 0.70 8.13 -2.39 -0.02 0.68 16 31 H 0.14 0.46 8.14 -2.39 -0.02 0.44 16 32 H 0.06 0.86 8.14 -2.38 -0.02 0.84 16 33 H 0.10 0.78 8.07 -2.39 -0.02 0.76 16 34 H 0.08 0.95 8.14 -2.38 -0.02 0.93 16 35 H 0.13 0.59 7.86 -2.39 -0.02 0.57 16 36 H 0.09 0.95 7.85 -2.39 -0.02 0.93 16 37 H 0.12 1.23 7.25 -2.38 -0.02 1.21 16 38 H 0.06 1.00 7.99 -2.39 -0.02 0.98 16 39 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 40 H 0.07 2.73 6.95 -2.39 -0.02 2.71 16 41 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 42 H -0.02 -1.49 8.14 -2.39 -0.02 -1.51 16 43 H -0.01 -0.78 8.14 -2.39 -0.02 -0.80 16 44 H 0.26 15.43 8.31 -92.71 -0.77 14.66 16 45 H 0.11 1.42 8.14 -2.39 -0.02 1.40 16 46 H 0.11 1.74 7.94 -2.39 -0.02 1.73 16 47 H 0.10 1.96 7.23 -2.39 -0.02 1.94 16 48 H 0.08 2.24 6.38 -2.38 -0.02 2.23 16 49 H 0.08 2.63 6.44 -2.39 -0.02 2.61 16 Total: -1.00 -84.52 396.01 5.23 -79.29 By element: Atomic # 1 Polarization: 9.38 SS G_CDS: 0.94 Total: 10.32 kcal Atomic # 6 Polarization: -1.14 SS G_CDS: 8.82 Total: 7.68 kcal Atomic # 7 Polarization: -116.17 SS G_CDS: -6.36 Total: -122.53 kcal Atomic # 8 Polarization: -20.32 SS G_CDS: -0.21 Total: -20.53 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.76 kcal Total: -84.52 5.23 -79.29 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001772173060.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.423 kcal (2) G-P(sol) polarization free energy of solvation -84.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds