Wall clock time and date at job start Tue Mar 31 2020 20:56:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34236 * 117.00233 * 2 1 4 4 O 1.20827 * 119.99603 * 0.02562 * 3 2 1 5 5 C 1.50698 * 119.99973 * 180.02562 * 3 2 1 6 6 C 1.52997 * 110.27361 * 302.08477 * 5 3 2 7 7 C 1.54589 * 110.31189 * 64.28151 * 5 3 2 8 8 C 1.54940 * 102.92125 * 140.87183 * 7 5 3 9 9 N 1.48541 * 103.22650 * 322.58715 * 8 7 5 10 10 C 1.38577 * 110.99676 * 159.72053 * 9 8 7 11 11 N 1.31216 * 126.46995 * 242.57500 * 10 9 8 12 12 N 1.28534 * 109.86207 * 180.02562 * 11 10 9 13 13 C 1.30302 * 110.04959 * 0.02562 * 12 11 10 14 14 C 1.50702 * 126.34511 * 179.97438 * 13 12 11 15 15 H 1.08995 * 109.46858 * 180.02562 * 14 13 12 16 16 C 1.53002 * 109.46650 * 300.01677 * 14 13 12 17 17 C 1.52993 * 109.47144 * 60.01518 * 14 13 12 18 18 C 1.50702 * 109.46606 * 174.99946 * 17 14 13 19 19 H 1.07994 * 120.00553 * 0.02562 * 18 17 14 20 20 C 1.37884 * 119.99967 * 180.02562 * 18 17 14 21 21 N 1.31517 * 119.99752 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00302 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47129 * 59.99651 * 22 20 18 24 24 H 1.48490 * 109.47299 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.46729 * 300.00004 * 22 20 18 26 26 N 1.36447 * 126.47586 * 62.62469 * 10 9 8 27 27 C 1.46508 * 127.13445 * 359.93748 * 26 10 9 28 28 C 1.47899 * 105.81923 * 39.20782 * 9 8 7 29 29 H 1.08997 * 109.46886 * 300.00194 * 1 2 3 30 30 H 1.08995 * 109.46882 * 59.99753 * 1 2 3 31 31 H 1.08998 * 109.46865 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47528 * 297.91643 * 6 5 3 33 33 H 1.09003 * 109.46903 * 57.91667 * 6 5 3 34 34 H 1.08996 * 109.47095 * 177.91481 * 6 5 3 35 35 H 1.08996 * 110.72957 * 259.22994 * 7 5 3 36 36 H 1.09002 * 110.72184 * 22.34156 * 7 5 3 37 37 H 1.09007 * 110.66889 * 204.15425 * 8 7 5 38 38 H 1.09001 * 110.66850 * 81.02310 * 8 7 5 39 39 H 1.08993 * 109.47418 * 300.00283 * 16 14 13 40 40 H 1.09005 * 109.47271 * 60.00562 * 16 14 13 41 41 H 1.09003 * 109.47019 * 180.02562 * 16 14 13 42 42 H 1.09000 * 109.47725 * 295.00094 * 17 14 13 43 43 H 1.09003 * 109.47093 * 55.00925 * 17 14 13 44 44 H 0.96997 * 119.99878 * 180.02562 * 21 20 18 45 45 H 1.08995 * 109.46788 * 89.97773 * 27 26 10 46 46 H 1.08999 * 109.46620 * 209.97523 * 27 26 10 47 47 H 1.08997 * 109.47091 * 329.97905 * 27 26 10 48 48 H 1.08996 * 109.91773 * 94.02353 * 28 9 8 49 49 H 1.09001 * 109.91731 * 215.12094 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5664 1.2748 -0.0006 6 6 4.1361 0.5410 1.2150 7 6 4.1346 0.6749 -1.3071 8 6 5.3050 1.6315 -1.6473 9 7 4.7804 2.9640 -1.2526 10 6 5.8138 3.8666 -1.0577 11 7 6.1194 4.4715 0.0659 12 7 7.1336 5.2404 -0.1139 13 6 7.5315 5.1725 -1.3528 14 6 8.6882 5.9225 -1.9616 15 1 8.7760 5.6609 -3.0161 16 6 8.4472 7.4275 -1.8279 17 6 9.9800 5.5462 -1.2333 18 6 11.1519 6.2001 -1.9190 19 1 10.9914 6.8221 -2.7871 20 6 12.4292 6.0041 -1.4381 21 7 12.6246 5.2470 -0.3806 22 14 13.8818 6.8151 -2.2875 23 1 13.7106 8.2900 -2.2607 24 1 15.1356 6.4499 -1.5808 25 1 13.9537 6.3508 -3.6962 26 7 6.7050 4.2948 -1.9979 27 6 6.7644 3.8964 -3.4066 28 6 4.0245 2.7451 -0.0004 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 3.7854 1.0229 2.1277 33 1 3.8038 -0.4970 1.2014 34 1 5.2251 0.5743 1.1820 35 1 4.5007 -0.3379 -1.1392 36 1 3.3823 0.6859 -2.0957 37 1 5.5254 1.6055 -2.7145 38 1 6.1905 1.3786 -1.0642 39 1 7.5269 7.6956 -2.3467 40 1 8.3593 7.6891 -0.7734 41 1 9.2836 7.9700 -2.2687 42 1 9.9270 5.8877 -0.1995 43 1 10.1057 4.4636 -1.2524 44 1 13.5231 5.1095 -0.0420 45 1 6.1483 4.5709 -4.0011 46 1 7.7962 3.9450 -3.7546 47 1 6.3929 2.8772 -3.5118 48 1 4.6676 2.9336 0.8593 49 1 3.1590 3.4068 0.0314 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001772173062.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:56:50 Heat of formation + Delta-G solvation = 1.052268 kcal Electronic energy + Delta-G solvation = -29841.878433 eV Core-core repulsion = 25805.877513 eV Total energy + Delta-G solvation = -4036.000921 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.67410 -41.23297 -39.13309 -36.76790 -35.41263 -34.79897 -33.69092 -32.14105 -30.37671 -28.40240 -28.08942 -27.40400 -26.92463 -26.55281 -24.11468 -23.82028 -22.47727 -21.91617 -20.68456 -20.00501 -18.95577 -17.79874 -17.38157 -17.08045 -16.67378 -16.48831 -16.03285 -15.72059 -15.30319 -14.58568 -14.47860 -14.06867 -13.93187 -13.76044 -13.47047 -13.21658 -13.11561 -13.05104 -12.83137 -12.78735 -12.42847 -12.33911 -12.28097 -12.08271 -11.75185 -11.43477 -11.27983 -11.20878 -11.15590 -10.99722 -10.92667 -10.73765 -10.61408 -10.50057 -10.26840 -10.05931 -9.84714 -9.60688 -9.30239 -9.12871 -8.37252 -7.99251 -6.01179 -4.04881 1.85309 2.07547 2.25663 2.51329 3.26688 3.31687 3.37198 3.38679 3.71052 3.87229 4.01775 4.35874 4.43010 4.54613 4.61654 4.73300 4.78055 4.81654 4.86117 4.94765 5.07717 5.13622 5.18239 5.21569 5.33397 5.34081 5.38639 5.40792 5.41610 5.51466 5.57872 5.71347 5.76097 5.81383 5.98843 6.05961 6.10727 6.18475 6.27943 6.45231 6.70645 6.79106 6.89941 7.05391 7.37567 7.39413 7.60903 7.78101 7.98092 8.34085 9.00519 9.21678 9.58588 11.09791 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.026838 B = 0.002301 C = 0.002265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.028744 B =12166.724869 C =12360.521559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.355 6.355 3 C 0.477 3.523 4 O -0.496 6.496 5 C -0.064 4.064 6 C -0.140 4.140 7 C -0.104 4.104 8 C 0.031 3.969 9 N -0.430 5.430 10 C 0.322 3.678 11 N -0.319 5.319 12 N -0.282 5.282 13 C 0.216 3.784 14 C -0.002 4.002 15 H 0.072 0.928 16 C -0.126 4.126 17 C 0.039 3.961 18 C -0.521 4.521 19 H 0.058 0.942 20 C 0.059 3.941 21 N -0.891 5.891 22 Si 0.892 3.108 23 H -0.276 1.276 24 H -0.288 1.288 25 H -0.278 1.278 26 N -0.483 5.483 27 C 0.076 3.924 28 C 0.057 3.943 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.102 0.898 32 H 0.068 0.932 33 H 0.074 0.926 34 H 0.076 0.924 35 H 0.096 0.904 36 H 0.084 0.916 37 H 0.095 0.905 38 H 0.065 0.935 39 H 0.031 0.969 40 H 0.061 0.939 41 H 0.075 0.925 42 H 0.032 0.968 43 H 0.013 0.987 44 H 0.262 0.738 45 H 0.078 0.922 46 H 0.095 0.905 47 H 0.085 0.915 48 H 0.093 0.907 49 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.475 -13.848 -4.065 25.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.272 6.272 3 C 0.318 3.682 4 O -0.382 6.382 5 C -0.066 4.066 6 C -0.197 4.197 7 C -0.142 4.142 8 C -0.096 4.096 9 N -0.153 5.153 10 C -0.034 4.034 11 N -0.164 5.164 12 N -0.120 5.120 13 C -0.051 4.051 14 C -0.023 4.023 15 H 0.090 0.910 16 C -0.184 4.184 17 C 0.001 3.999 18 C -0.559 4.559 19 H 0.076 0.924 20 C -0.143 4.143 21 N -0.529 5.529 22 Si 0.720 3.280 23 H -0.201 1.201 24 H -0.213 1.213 25 H -0.203 1.203 26 N -0.178 5.178 27 C -0.068 4.068 28 C -0.070 4.070 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.120 0.880 32 H 0.087 0.913 33 H 0.093 0.907 34 H 0.095 0.905 35 H 0.114 0.886 36 H 0.103 0.897 37 H 0.113 0.887 38 H 0.083 0.917 39 H 0.051 0.949 40 H 0.080 0.920 41 H 0.093 0.907 42 H 0.051 0.949 43 H 0.031 0.969 44 H 0.071 0.929 45 H 0.097 0.903 46 H 0.114 0.886 47 H 0.103 0.897 48 H 0.111 0.889 49 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -21.984 -12.995 -2.899 25.702 hybrid contribution 1.020 -0.282 -1.359 1.722 sum -20.964 -13.277 -4.258 25.177 Atomic orbital electron populations 1.23298 0.76225 1.03752 1.02705 1.86498 1.23423 1.33153 1.84081 1.23363 0.91383 0.81390 0.72018 1.90677 1.66674 1.36270 1.44621 1.21357 0.87636 0.98217 0.99374 1.21928 1.02101 1.00467 0.95218 1.22574 0.97452 0.99225 0.94932 1.23504 0.97283 0.86430 1.02374 1.61588 1.16322 1.06693 1.30745 1.22506 0.92453 1.01757 0.86709 1.74472 1.11622 1.11466 1.18831 1.74014 1.06791 1.17623 1.13573 1.25623 0.95668 0.93898 0.89920 1.19998 0.89945 0.93608 0.98743 0.90957 1.21674 1.00150 0.94098 1.02458 1.19099 0.87840 0.96614 0.96338 1.21108 0.91170 1.30293 1.13379 0.92370 1.25009 0.98976 0.95290 0.95014 1.69971 1.21851 1.38014 1.23081 0.86656 0.81869 0.79957 0.79494 1.20140 1.21341 1.20317 1.46105 1.25250 1.35590 1.10842 1.22109 1.04851 1.01670 0.78124 1.23020 0.99807 0.93213 0.90916 0.91801 0.91819 0.87992 0.91319 0.90684 0.90526 0.88583 0.89750 0.88662 0.91690 0.94943 0.92031 0.90660 0.94950 0.96880 0.92870 0.90326 0.88645 0.89697 0.88896 0.87081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 10.56 101.05 1.07 1.27 16 2 O -0.36 -3.06 10.42 -39.27 -0.41 -3.47 16 3 C 0.48 5.01 6.47 36.00 0.23 5.24 16 4 O -0.50 -6.67 14.99 -18.75 -0.28 -6.96 16 5 C -0.06 -0.61 0.90 -154.31 -0.14 -0.75 16 6 C -0.14 -1.10 8.14 37.16 0.30 -0.80 16 7 C -0.10 -0.80 6.15 -24.87 -0.15 -0.96 16 8 C 0.03 0.31 5.92 -1.89 -0.01 0.30 16 9 N -0.43 -5.73 5.32 -170.54 -0.91 -6.64 16 10 C 0.32 5.47 7.04 -318.89 -2.24 3.22 16 11 N -0.32 -6.47 10.70 30.31 0.32 -6.15 16 12 N -0.28 -6.29 12.18 32.99 0.40 -5.89 16 13 C 0.22 4.34 6.58 -154.01 -1.01 3.33 16 14 C 0.00 -0.04 2.70 -91.77 -0.25 -0.29 16 15 H 0.07 1.34 6.94 -51.93 -0.36 0.98 16 16 C -0.13 -2.40 8.98 37.16 0.33 -2.07 16 17 C 0.04 1.00 4.43 -27.89 -0.12 0.87 16 18 C -0.52 -14.03 8.41 -34.44 -0.29 -14.32 16 19 H 0.06 1.48 7.06 -52.49 -0.37 1.11 16 20 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 21 N -0.89 -26.50 13.29 55.43 0.74 -25.76 16 22 Si 0.89 21.09 29.54 -169.99 -5.02 16.07 16 23 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 24 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 25 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 26 N -0.48 -8.00 3.21 -121.46 -0.39 -8.39 16 27 C 0.08 0.87 10.83 59.85 0.65 1.52 16 28 C 0.06 0.73 5.74 -2.75 -0.02 0.72 16 29 H 0.06 0.39 8.13 -51.93 -0.42 -0.03 16 30 H 0.06 0.39 8.13 -51.93 -0.42 -0.03 16 31 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.07 0.48 8.08 -51.93 -0.42 0.06 16 34 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.10 0.54 7.86 -51.93 -0.41 0.14 16 36 H 0.08 0.63 7.86 -51.93 -0.41 0.22 16 37 H 0.10 0.78 6.02 -51.92 -0.31 0.46 16 38 H 0.06 0.70 7.99 -51.93 -0.42 0.29 16 39 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 41 H 0.07 1.44 6.95 -51.93 -0.36 1.08 16 42 H 0.03 0.92 8.14 -51.93 -0.42 0.50 16 43 H 0.01 0.36 8.14 -51.93 -0.42 -0.07 16 44 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 45 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 46 H 0.09 1.06 7.23 -51.93 -0.38 0.69 16 47 H 0.08 0.76 5.39 -51.93 -0.28 0.48 16 48 H 0.09 1.31 6.38 -51.93 -0.33 0.98 16 49 H 0.11 1.59 6.44 -51.93 -0.33 1.26 16 LS Contribution 393.17 15.07 5.93 5.93 Total: -1.00 -35.03 393.17 -9.11 -44.14 By element: Atomic # 1 Polarization: 6.03 SS G_CDS: -7.74 Total: -1.71 kcal Atomic # 6 Polarization: 0.58 SS G_CDS: -1.75 Total: -1.17 kcal Atomic # 7 Polarization: -53.00 SS G_CDS: 0.17 Total: -52.83 kcal Atomic # 8 Polarization: -9.73 SS G_CDS: -0.69 Total: -10.42 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -35.03 -9.11 -44.14 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001772173062.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.195 kcal (2) G-P(sol) polarization free energy of solvation -35.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.143 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds