Wall clock time and date at job start Tue Mar 31 2020 20:56:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34236 * 117.00233 * 2 1 4 4 O 1.20827 * 119.99603 * 0.02562 * 3 2 1 5 5 C 1.50698 * 119.99973 * 180.02562 * 3 2 1 6 6 C 1.52997 * 110.27361 * 302.08477 * 5 3 2 7 7 C 1.54589 * 110.31189 * 64.28151 * 5 3 2 8 8 C 1.54940 * 102.92125 * 140.87183 * 7 5 3 9 9 N 1.48541 * 103.22650 * 322.58715 * 8 7 5 10 10 C 1.38577 * 110.99676 * 159.72053 * 9 8 7 11 11 N 1.31216 * 126.46995 * 242.57500 * 10 9 8 12 12 N 1.28534 * 109.86207 * 180.02562 * 11 10 9 13 13 C 1.30302 * 110.04959 * 0.02562 * 12 11 10 14 14 C 1.50702 * 126.34511 * 179.97438 * 13 12 11 15 15 H 1.08995 * 109.46858 * 180.02562 * 14 13 12 16 16 C 1.53002 * 109.46650 * 300.01677 * 14 13 12 17 17 C 1.52993 * 109.47144 * 60.01518 * 14 13 12 18 18 C 1.50702 * 109.46606 * 174.99946 * 17 14 13 19 19 H 1.07994 * 120.00553 * 0.02562 * 18 17 14 20 20 C 1.37884 * 119.99967 * 180.02562 * 18 17 14 21 21 N 1.31517 * 119.99752 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00302 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47129 * 59.99651 * 22 20 18 24 24 H 1.48490 * 109.47299 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.46729 * 300.00004 * 22 20 18 26 26 N 1.36447 * 126.47586 * 62.62469 * 10 9 8 27 27 C 1.46508 * 127.13445 * 359.93748 * 26 10 9 28 28 C 1.47899 * 105.81923 * 39.20782 * 9 8 7 29 29 H 1.08997 * 109.46886 * 300.00194 * 1 2 3 30 30 H 1.08995 * 109.46882 * 59.99753 * 1 2 3 31 31 H 1.08998 * 109.46865 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47528 * 297.91643 * 6 5 3 33 33 H 1.09003 * 109.46903 * 57.91667 * 6 5 3 34 34 H 1.08996 * 109.47095 * 177.91481 * 6 5 3 35 35 H 1.08996 * 110.72957 * 259.22994 * 7 5 3 36 36 H 1.09002 * 110.72184 * 22.34156 * 7 5 3 37 37 H 1.09007 * 110.66889 * 204.15425 * 8 7 5 38 38 H 1.09001 * 110.66850 * 81.02310 * 8 7 5 39 39 H 1.08993 * 109.47418 * 300.00283 * 16 14 13 40 40 H 1.09005 * 109.47271 * 60.00562 * 16 14 13 41 41 H 1.09003 * 109.47019 * 180.02562 * 16 14 13 42 42 H 1.09000 * 109.47725 * 295.00094 * 17 14 13 43 43 H 1.09003 * 109.47093 * 55.00925 * 17 14 13 44 44 H 0.96997 * 119.99878 * 180.02562 * 21 20 18 45 45 H 1.08995 * 109.46788 * 89.97773 * 27 26 10 46 46 H 1.08999 * 109.46620 * 209.97523 * 27 26 10 47 47 H 1.08997 * 109.47091 * 329.97905 * 27 26 10 48 48 H 1.08996 * 109.91773 * 94.02353 * 28 9 8 49 49 H 1.09001 * 109.91731 * 215.12094 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5664 1.2748 -0.0006 6 6 4.1361 0.5410 1.2150 7 6 4.1346 0.6749 -1.3071 8 6 5.3050 1.6315 -1.6473 9 7 4.7804 2.9640 -1.2526 10 6 5.8138 3.8666 -1.0577 11 7 6.1194 4.4715 0.0659 12 7 7.1336 5.2404 -0.1139 13 6 7.5315 5.1725 -1.3528 14 6 8.6882 5.9225 -1.9616 15 1 8.7760 5.6609 -3.0161 16 6 8.4472 7.4275 -1.8279 17 6 9.9800 5.5462 -1.2333 18 6 11.1519 6.2001 -1.9190 19 1 10.9914 6.8221 -2.7871 20 6 12.4292 6.0041 -1.4381 21 7 12.6246 5.2470 -0.3806 22 14 13.8818 6.8151 -2.2875 23 1 13.7106 8.2900 -2.2607 24 1 15.1356 6.4499 -1.5808 25 1 13.9537 6.3508 -3.6962 26 7 6.7050 4.2948 -1.9979 27 6 6.7644 3.8964 -3.4066 28 6 4.0245 2.7451 -0.0004 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 3.7854 1.0229 2.1277 33 1 3.8038 -0.4970 1.2014 34 1 5.2251 0.5743 1.1820 35 1 4.5007 -0.3379 -1.1392 36 1 3.3823 0.6859 -2.0957 37 1 5.5254 1.6055 -2.7145 38 1 6.1905 1.3786 -1.0642 39 1 7.5269 7.6956 -2.3467 40 1 8.3593 7.6891 -0.7734 41 1 9.2836 7.9700 -2.2687 42 1 9.9270 5.8877 -0.1995 43 1 10.1057 4.4636 -1.2524 44 1 13.5231 5.1095 -0.0420 45 1 6.1483 4.5709 -4.0011 46 1 7.7962 3.9450 -3.7546 47 1 6.3929 2.8772 -3.5118 48 1 4.6676 2.9336 0.8593 49 1 3.1590 3.4068 0.0314 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001772173062.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:56:49 Heat of formation + Delta-G solvation = -19.533097 kcal Electronic energy + Delta-G solvation = -29842.771082 eV Core-core repulsion = 25805.877513 eV Total energy + Delta-G solvation = -4036.893569 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -44.06644 -42.07078 -40.03797 -37.57526 -37.11383 -36.03769 -34.90211 -34.02075 -31.30874 -29.75778 -28.84357 -28.67898 -28.44644 -27.41986 -25.90477 -24.74803 -23.69672 -23.24113 -21.90704 -21.02414 -20.31755 -18.66906 -18.61800 -18.30342 -17.95559 -17.41685 -17.32185 -17.03290 -16.47746 -16.22550 -15.47849 -15.34067 -15.00187 -14.63774 -14.56565 -14.44148 -14.30157 -14.05642 -13.98238 -13.66281 -13.58698 -13.51251 -13.14688 -13.09045 -12.94420 -12.84471 -12.77970 -12.60851 -12.38779 -12.29128 -12.18261 -11.94421 -11.90091 -11.82493 -11.68006 -11.41178 -11.34191 -11.20589 -11.05742 -10.70040 -10.51777 -9.37925 -8.14760 -6.26376 0.73768 1.04827 1.20354 1.45145 1.48490 1.55677 1.60549 1.79281 2.44964 2.61645 3.02417 3.19108 3.22919 3.46873 3.63414 3.68307 3.85943 3.91889 3.99866 4.03650 4.16258 4.27421 4.31105 4.33457 4.39659 4.42387 4.49702 4.58128 4.58272 4.69427 4.71388 4.72959 4.77825 4.81382 4.83273 4.94278 4.99592 5.09676 5.13332 5.17673 5.29116 5.34144 5.38645 5.46728 5.48312 5.70783 5.85061 6.11356 6.22249 6.62005 6.89175 7.42620 7.75597 8.97377 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.026838 B = 0.002301 C = 0.002265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.028744 B =12166.724869 C =12360.521559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.350 6.350 3 C 0.482 3.518 4 O -0.533 6.533 5 C -0.060 4.060 6 C -0.137 4.137 7 C -0.092 4.092 8 C 0.028 3.972 9 N -0.428 5.428 10 C 0.341 3.659 11 N -0.360 5.360 12 N -0.327 5.327 13 C 0.202 3.798 14 C 0.009 3.991 15 H 0.099 0.901 16 C -0.119 4.119 17 C 0.052 3.948 18 C -0.529 4.529 19 H 0.077 0.923 20 C -0.003 4.003 21 N -0.936 5.936 22 Si 0.967 3.033 23 H -0.266 1.266 24 H -0.291 1.291 25 H -0.261 1.261 26 N -0.479 5.479 27 C 0.064 3.936 28 C 0.057 3.943 29 H 0.059 0.941 30 H 0.061 0.939 31 H 0.136 0.864 32 H 0.061 0.939 33 H 0.098 0.902 34 H 0.074 0.926 35 H 0.127 0.873 36 H 0.095 0.905 37 H 0.120 0.880 38 H 0.056 0.944 39 H 0.060 0.940 40 H 0.038 0.962 41 H 0.075 0.925 42 H -0.012 1.012 43 H -0.019 1.019 44 H 0.261 0.739 45 H 0.099 0.901 46 H 0.100 0.900 47 H 0.113 0.887 48 H 0.073 0.927 49 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.284 -15.463 -7.031 28.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.265 6.265 3 C 0.325 3.675 4 O -0.422 6.422 5 C -0.062 4.062 6 C -0.194 4.194 7 C -0.130 4.130 8 C -0.098 4.098 9 N -0.153 5.153 10 C -0.017 4.017 11 N -0.204 5.204 12 N -0.165 5.165 13 C -0.067 4.067 14 C -0.012 4.012 15 H 0.117 0.883 16 C -0.177 4.177 17 C 0.014 3.986 18 C -0.566 4.566 19 H 0.095 0.905 20 C -0.200 4.200 21 N -0.577 5.577 22 Si 0.791 3.209 23 H -0.191 1.191 24 H -0.217 1.217 25 H -0.185 1.185 26 N -0.173 5.173 27 C -0.077 4.077 28 C -0.070 4.070 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.154 0.846 32 H 0.080 0.920 33 H 0.117 0.883 34 H 0.093 0.907 35 H 0.145 0.855 36 H 0.113 0.887 37 H 0.138 0.862 38 H 0.074 0.926 39 H 0.079 0.921 40 H 0.057 0.943 41 H 0.094 0.906 42 H 0.006 0.994 43 H 0.000 1.000 44 H 0.070 0.930 45 H 0.118 0.882 46 H 0.119 0.881 47 H 0.131 0.869 48 H 0.091 0.909 49 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -22.815 -14.638 -5.903 27.743 hybrid contribution 1.113 0.119 -0.421 1.196 sum -21.702 -14.519 -6.324 26.866 Atomic orbital electron populations 1.23595 0.74685 1.05921 1.02472 1.86487 1.24873 1.31754 1.83431 1.23464 0.91580 0.81422 0.71029 1.90671 1.67464 1.37567 1.46483 1.21313 0.87409 0.96105 1.01331 1.21934 1.01849 1.01458 0.94141 1.22641 0.96561 0.99938 0.93826 1.23710 0.97839 0.84624 1.03658 1.61709 1.14998 1.07952 1.30611 1.22857 0.92018 1.00887 0.85953 1.74376 1.12184 1.12940 1.20913 1.73902 1.08081 1.19144 1.15346 1.25354 0.96372 0.95089 0.89885 1.19766 0.87641 0.94523 0.99232 0.88298 1.21591 1.01538 0.93128 1.01407 1.18834 0.90858 0.94321 0.94621 1.21548 0.91550 1.29923 1.13624 0.90511 1.26018 1.02462 0.95891 0.95649 1.70145 1.22471 1.39961 1.25079 0.85475 0.77508 0.79115 0.78791 1.19119 1.21688 1.18545 1.46256 1.24134 1.34410 1.12461 1.22556 1.05968 1.03844 0.75343 1.22917 0.98515 0.95470 0.90083 0.92215 0.91992 0.84604 0.92035 0.88319 0.90747 0.85460 0.88690 0.86162 0.92567 0.92124 0.94270 0.90580 0.99361 1.00024 0.92996 0.88232 0.88122 0.86879 0.90858 0.89172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.56 113.37 1.20 1.46 16 2 O -0.35 -5.22 10.42 -51.47 -0.54 -5.76 16 3 C 0.48 9.56 6.47 71.24 0.46 10.02 16 4 O -0.53 -14.36 14.99 21.96 0.33 -14.03 16 5 C -0.06 -1.06 0.90 -52.05 -0.05 -1.10 16 6 C -0.14 -1.97 8.14 71.98 0.59 -1.39 16 7 C -0.09 -1.13 6.15 31.80 0.20 -0.94 16 8 C 0.03 0.48 5.92 86.65 0.51 0.99 16 9 N -0.43 -11.06 5.32 -693.47 -3.69 -14.75 16 10 C 0.34 11.59 7.04 260.12 1.83 13.42 16 11 N -0.36 -15.27 10.70 -58.01 -0.62 -15.89 16 12 N -0.33 -15.31 12.18 -49.53 -0.60 -15.92 16 13 C 0.20 8.26 6.58 137.64 0.91 9.17 16 14 C 0.01 0.38 2.70 -11.54 -0.03 0.35 16 15 H 0.10 3.49 6.94 -2.39 -0.02 3.47 16 16 C -0.12 -4.51 8.98 71.98 0.65 -3.86 16 17 C 0.05 2.75 4.43 29.85 0.13 2.88 16 18 C -0.53 -28.61 8.41 25.60 0.22 -28.40 16 19 H 0.08 3.79 7.06 -2.91 -0.02 3.77 16 20 C 0.00 -0.15 5.46 84.66 0.46 0.31 16 21 N -0.94 -57.44 13.29 21.45 0.28 -57.16 16 22 Si 0.97 43.11 29.54 68.60 2.03 45.13 16 23 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 24 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 25 H -0.26 -10.88 7.11 99.48 0.71 -10.17 16 26 N -0.48 -15.49 3.21 -538.18 -1.73 -17.22 16 27 C 0.06 1.28 10.83 127.77 1.38 2.67 16 28 C 0.06 1.49 5.74 86.45 0.50 1.98 16 29 H 0.06 0.67 8.13 -2.39 -0.02 0.65 16 30 H 0.06 0.67 8.13 -2.39 -0.02 0.65 16 31 H 0.14 0.44 8.14 -2.39 -0.02 0.42 16 32 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.10 0.97 8.08 -2.39 -0.02 0.95 16 34 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 35 H 0.13 0.86 7.86 -2.39 -0.02 0.84 16 36 H 0.09 1.04 7.86 -2.39 -0.02 1.02 16 37 H 0.12 1.48 6.02 -2.38 -0.01 1.47 16 38 H 0.06 1.12 7.99 -2.39 -0.02 1.10 16 39 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 40 H 0.04 1.64 8.14 -2.38 -0.02 1.62 16 41 H 0.08 2.84 6.95 -2.39 -0.02 2.82 16 42 H -0.01 -0.74 8.14 -2.39 -0.02 -0.76 16 43 H -0.02 -1.09 8.14 -2.39 -0.02 -1.11 16 44 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 45 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 46 H 0.10 1.97 7.23 -2.39 -0.02 1.95 16 47 H 0.11 1.61 5.39 -2.39 -0.01 1.60 16 48 H 0.07 2.20 6.38 -2.39 -0.02 2.19 16 49 H 0.09 2.72 6.44 -2.39 -0.02 2.70 16 Total: -1.00 -81.18 393.17 5.36 -75.82 By element: Atomic # 1 Polarization: 11.25 SS G_CDS: 0.95 Total: 12.20 kcal Atomic # 6 Polarization: -1.38 SS G_CDS: 8.95 Total: 7.57 kcal Atomic # 7 Polarization: -114.58 SS G_CDS: -6.36 Total: -120.93 kcal Atomic # 8 Polarization: -19.58 SS G_CDS: -0.21 Total: -19.79 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.13 kcal Total: -81.18 5.36 -75.82 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001772173062.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.287 kcal (2) G-P(sol) polarization free energy of solvation -81.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds