Wall clock time and date at job start Tue Mar 31 2020 19:30:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46502 * 109.47090 * 2 1 4 4 C 1.34942 * 126.03991 * 124.97441 * 3 2 1 5 5 C 1.35316 * 107.74613 * 179.75096 * 4 3 2 6 6 C 1.50706 * 126.04256 * 180.27593 * 5 4 3 7 7 C 1.50702 * 109.46797 * 270.16309 * 6 5 4 8 8 O 1.21281 * 120.00364 * 0.02562 * 7 6 5 9 9 N 1.34770 * 119.99636 * 179.97438 * 7 6 5 10 10 C 1.47156 * 120.98533 * 0.02562 * 9 7 6 11 11 C 1.53296 * 108.38313 * 230.51080 * 10 9 7 12 12 O 1.42962 * 109.22033 * 307.69152 * 11 10 9 13 13 C 1.42961 * 114.16626 * 62.58607 * 12 11 10 14 14 H 1.09005 * 109.51551 * 57.34044 * 13 12 11 15 15 C 1.53008 * 109.51323 * 177.44184 * 13 12 11 16 16 H 1.09005 * 109.46950 * 174.99709 * 15 13 12 17 17 C 1.52995 * 109.46759 * 55.00130 * 15 13 12 18 18 N 1.46498 * 109.47150 * 294.99897 * 15 13 12 19 19 C 1.36936 * 119.99989 * 205.00194 * 18 15 13 20 20 H 1.07993 * 120.00011 * 0.02562 * 19 18 15 21 21 C 1.38809 * 119.99751 * 179.97438 * 19 18 15 22 22 N 1.31616 * 120.00369 * 359.97438 * 21 19 18 23 23 Si 1.86808 * 119.99756 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47179 * 0.02562 * 23 21 19 25 25 H 1.48495 * 109.47141 * 120.00249 * 23 21 19 26 26 H 1.48505 * 109.47034 * 240.00079 * 23 21 19 27 27 C 1.47157 * 120.98190 * 179.71898 * 9 7 6 28 28 C 1.39870 * 107.92161 * 0.39436 * 5 4 3 29 29 N 1.30836 * 108.20019 * 359.59732 * 28 5 4 30 30 H 1.08994 * 109.46712 * 60.00446 * 1 2 3 31 31 H 1.09000 * 109.46932 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.46981 * 300.00422 * 1 2 3 33 33 H 1.09002 * 109.47249 * 239.99608 * 2 1 3 34 34 H 1.08999 * 109.47407 * 119.99475 * 2 1 3 35 35 H 1.08002 * 126.12737 * 359.97438 * 4 3 2 36 36 H 1.09002 * 109.46808 * 30.16339 * 6 5 4 37 37 H 1.08996 * 109.47016 * 150.16639 * 6 5 4 38 38 H 1.08995 * 109.67946 * 350.23067 * 10 9 7 39 39 H 1.08997 * 109.68129 * 110.74819 * 10 9 7 40 40 H 1.08991 * 109.51605 * 67.61858 * 11 10 9 41 41 H 1.08999 * 109.51080 * 187.72778 * 11 10 9 42 42 H 1.08997 * 109.47205 * 299.99175 * 17 15 13 43 43 H 1.09001 * 109.47594 * 60.00183 * 17 15 13 44 44 H 1.09004 * 109.46576 * 180.02562 * 17 15 13 45 45 H 0.97002 * 120.00000 * 25.00067 * 18 15 13 46 46 H 0.97004 * 119.99913 * 179.97438 * 22 21 19 47 47 H 1.09001 * 109.68399 * 249.21610 * 27 9 7 48 48 H 1.09002 * 109.67985 * 9.76609 * 27 9 7 49 49 H 1.08002 * 125.90382 * 179.86983 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.8727 1.9213 0.8941 5 6 3.0757 3.2122 0.5429 6 6 3.9648 4.1965 1.2583 7 6 3.1684 4.9160 2.3162 8 8 1.9946 4.6548 2.4741 9 7 3.7608 5.8488 3.0876 10 6 5.1837 6.1823 2.9151 11 6 5.8645 6.1207 4.2872 12 8 5.1313 6.9265 5.2130 13 6 3.7908 6.4844 5.4399 14 1 3.8024 5.4539 5.7951 15 6 3.1283 7.3793 6.4895 16 1 2.0807 7.0983 6.5974 17 6 3.2214 8.8405 6.0457 18 7 3.8130 7.2144 7.7741 19 6 3.1481 7.4745 8.9426 20 1 2.1190 7.8008 8.9172 21 6 3.7968 7.3178 10.1598 22 7 5.0506 6.9187 10.1909 23 14 2.8900 7.6734 11.7539 24 1 1.5018 8.1034 11.4484 25 1 2.8551 6.4453 12.5880 26 1 3.5922 8.7536 12.4924 27 6 3.0023 6.5689 4.1228 28 6 2.3125 3.4724 -0.6000 29 7 1.6809 2.3747 -0.9283 30 1 -0.3632 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8899 33 1 1.8934 -0.5139 -0.8900 34 1 1.8934 -0.5137 0.8900 35 1 3.3178 1.4131 1.7368 36 1 4.7932 3.6645 1.7261 37 1 4.3554 4.9200 0.5428 38 1 5.6501 5.4636 2.2413 39 1 5.2779 7.1868 2.5027 40 1 5.8837 5.0890 4.6382 41 1 6.8843 6.4964 4.2048 42 1 4.2690 9.1215 5.9379 43 1 2.7119 8.9632 5.0899 44 1 2.7498 9.4780 6.7937 45 1 4.7373 6.9210 7.7969 46 1 5.5039 6.8096 11.0415 47 1 2.8809 7.6119 3.8303 48 1 2.0234 6.1063 4.2491 49 1 2.2577 4.4153 -1.1238 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485648280.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:30:41 Heat of formation + Delta-G solvation = 17.941511 kcal Electronic energy + Delta-G solvation = -29282.749069 eV Core-core repulsion = 25247.480520 eV Total energy + Delta-G solvation = -4035.268548 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.46998 -40.19533 -38.31215 -35.48538 -34.89895 -34.46523 -32.64022 -32.06829 -30.44830 -30.21403 -28.49464 -27.82767 -26.37298 -24.64986 -24.01996 -23.41960 -22.34473 -20.97605 -20.56808 -19.63661 -19.03853 -17.42656 -17.26367 -17.02920 -16.27436 -15.76202 -15.64202 -15.58129 -15.07733 -14.62425 -14.52144 -14.42127 -14.23699 -13.76745 -13.64084 -13.43332 -13.29988 -12.98692 -12.79178 -12.63985 -12.48675 -12.43273 -12.12668 -11.96980 -11.92536 -11.72560 -11.29907 -11.10534 -10.84121 -10.72177 -10.70477 -10.50124 -10.23850 -9.99692 -9.79746 -9.75219 -9.62707 -9.58395 -8.88485 -8.55999 -8.42116 -6.91312 -5.72190 -3.00619 1.71028 2.28450 2.51580 2.63686 3.02951 3.45613 3.51446 3.53512 4.00105 4.14718 4.53673 4.56182 4.60894 4.61368 4.74263 4.78332 4.79870 4.85102 4.98011 5.03050 5.12735 5.21729 5.25351 5.34356 5.36915 5.38349 5.51013 5.60232 5.61696 5.71067 5.75027 5.77289 5.85276 5.88728 6.01253 6.04101 6.24561 6.41316 6.47016 6.49351 6.68209 6.80889 6.85211 7.18725 7.36003 7.50640 7.52031 7.74070 8.18325 8.46169 9.58113 10.16010 10.52690 11.50360 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.016287 B = 0.002281 C = 0.002131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1718.739985 B =12271.059378 C =13134.912012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.132 3.868 3 N -0.373 5.373 4 C 0.070 3.930 5 C -0.222 4.222 6 C -0.058 4.058 7 C 0.513 3.487 8 O -0.532 6.532 9 N -0.617 5.617 10 C 0.072 3.928 11 C 0.045 3.955 12 O -0.358 6.358 13 C 0.077 3.923 14 H 0.062 0.938 15 C 0.184 3.816 16 H 0.059 0.941 17 C -0.162 4.162 18 N -0.719 5.719 19 C -0.237 4.237 20 H 0.071 0.929 21 C -0.014 4.014 22 N -0.931 5.931 23 Si 0.905 3.095 24 H -0.280 1.280 25 H -0.292 1.292 26 H -0.292 1.292 27 C 0.083 3.917 28 C 0.062 3.938 29 N -0.297 5.297 30 H 0.070 0.930 31 H 0.074 0.926 32 H 0.062 0.938 33 H 0.083 0.917 34 H 0.095 0.905 35 H 0.171 0.829 36 H 0.097 0.903 37 H 0.100 0.900 38 H 0.091 0.909 39 H 0.077 0.923 40 H 0.052 0.948 41 H 0.103 0.897 42 H 0.056 0.944 43 H 0.035 0.965 44 H 0.051 0.949 45 H 0.389 0.611 46 H 0.254 0.746 47 H 0.079 0.921 48 H 0.098 0.902 49 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.141 -10.616 -24.240 26.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.011 3.989 3 N -0.155 5.155 4 C -0.076 4.076 5 C -0.234 4.234 6 C -0.099 4.099 7 C 0.301 3.699 8 O -0.408 6.408 9 N -0.352 5.352 10 C -0.051 4.051 11 C -0.033 4.033 12 O -0.276 6.276 13 C 0.018 3.982 14 H 0.080 0.920 15 C 0.074 3.926 16 H 0.076 0.924 17 C -0.222 4.222 18 N -0.361 5.361 19 C -0.368 4.368 20 H 0.089 0.911 21 C -0.210 4.210 22 N -0.579 5.579 23 Si 0.737 3.263 24 H -0.206 1.206 25 H -0.220 1.220 26 H -0.219 1.219 27 C -0.040 4.040 28 C -0.124 4.124 29 N -0.118 5.118 30 H 0.089 0.911 31 H 0.093 0.907 32 H 0.081 0.919 33 H 0.101 0.899 34 H 0.113 0.887 35 H 0.188 0.812 36 H 0.115 0.885 37 H 0.118 0.882 38 H 0.109 0.891 39 H 0.096 0.904 40 H 0.071 0.929 41 H 0.121 0.879 42 H 0.076 0.924 43 H 0.054 0.946 44 H 0.071 0.929 45 H 0.223 0.777 46 H 0.063 0.937 47 H 0.097 0.903 48 H 0.116 0.884 49 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -1.422 -11.297 -24.750 27.244 hybrid contribution 0.471 0.326 1.480 1.587 sum -0.951 -10.970 -23.271 25.745 Atomic orbital electron populations 1.22057 0.93737 1.02793 1.03814 1.21673 0.96224 0.77454 1.03594 1.48593 1.35503 1.10174 1.21218 1.22259 0.95076 0.94792 0.95495 1.19398 1.08495 0.94363 1.01114 1.19911 0.96939 0.96919 0.96088 1.20763 0.87968 0.79143 0.82037 1.90705 1.16467 1.64334 1.69289 1.48240 1.10920 1.39676 1.36357 1.22500 0.81158 1.02188 0.99252 1.22899 0.96014 0.96359 0.88008 1.88101 1.24681 1.52629 1.62230 1.23046 0.82240 0.99327 0.93609 0.91953 1.20203 0.94994 0.92188 0.85262 0.92367 1.22409 1.01674 0.99392 0.98728 1.42363 1.13703 1.80802 0.99217 1.19298 0.95635 1.37525 0.84347 0.91131 1.24735 0.96231 1.02473 0.97583 1.69689 1.10265 1.53314 1.24682 0.86139 0.78723 0.77389 0.84087 1.20567 1.21964 1.21920 1.22541 0.96717 0.97305 0.87400 1.23684 0.95151 0.97293 0.96264 1.77281 1.23402 0.97005 1.14090 0.91116 0.90744 0.91866 0.89890 0.88699 0.81228 0.88491 0.88208 0.89116 0.90445 0.92933 0.87928 0.92444 0.94646 0.92948 0.77696 0.93654 0.90280 0.88397 0.80369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.14 10.10 37.16 0.38 -0.76 16 2 C 0.13 0.87 7.23 -4.04 -0.03 0.84 16 3 N -0.37 -3.82 3.68 -61.36 -0.23 -4.04 16 4 C 0.07 0.69 11.36 -17.23 -0.20 0.50 16 5 C -0.22 -2.32 4.59 -105.05 -0.48 -2.81 16 6 C -0.06 -0.50 4.56 -29.03 -0.13 -0.63 16 7 C 0.51 6.54 7.70 -10.99 -0.08 6.46 16 8 O -0.53 -9.07 15.50 5.56 0.09 -8.99 16 9 N -0.62 -7.60 3.01 -172.00 -0.52 -8.12 16 10 C 0.07 0.67 6.54 -3.53 -0.02 0.64 16 11 C 0.05 0.52 6.99 37.31 0.26 0.79 16 12 O -0.36 -5.94 9.24 -35.23 -0.33 -6.26 16 13 C 0.08 1.32 2.62 -26.34 -0.07 1.25 16 14 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 15 C 0.18 3.71 2.77 -67.93 -0.19 3.53 16 16 H 0.06 1.18 8.08 -51.93 -0.42 0.76 16 17 C -0.16 -3.00 9.06 37.16 0.34 -2.67 16 18 N -0.72 -18.31 5.10 -53.43 -0.27 -18.58 16 19 C -0.24 -6.63 9.93 -15.06 -0.15 -6.78 16 20 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 21 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 22 N -0.93 -28.39 13.06 55.49 0.72 -27.67 16 23 Si 0.91 22.60 29.55 -169.99 -5.02 17.57 16 24 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 25 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 26 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 27 C 0.08 1.21 5.84 -3.30 -0.02 1.19 16 28 C 0.06 0.69 11.96 -17.37 -0.21 0.48 16 29 N -0.30 -3.62 12.42 30.62 0.38 -3.24 16 30 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 34 H 0.09 0.41 8.07 -51.93 -0.42 -0.01 16 35 H 0.17 1.22 8.06 -52.49 -0.42 0.80 16 36 H 0.10 0.63 7.66 -51.93 -0.40 0.23 16 37 H 0.10 0.63 8.02 -51.93 -0.42 0.22 16 38 H 0.09 0.54 6.05 -51.93 -0.31 0.22 16 39 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 41 H 0.10 0.97 8.14 -51.93 -0.42 0.54 16 42 H 0.06 1.11 7.56 -51.93 -0.39 0.72 16 43 H 0.03 0.55 6.42 -51.93 -0.33 0.21 16 44 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 45 H 0.39 10.66 7.58 -40.82 -0.31 10.35 16 46 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 47 H 0.08 1.11 6.29 -51.93 -0.33 0.79 16 48 H 0.10 1.55 7.08 -51.93 -0.37 1.19 16 49 H 0.18 1.54 8.06 -52.49 -0.42 1.11 16 LS Contribution 397.97 15.07 6.00 6.00 Total: -1.00 -36.50 397.97 -7.77 -44.27 By element: Atomic # 1 Polarization: 15.41 SS G_CDS: -7.89 Total: 7.52 kcal Atomic # 6 Polarization: 2.23 SS G_CDS: -0.70 Total: 1.53 kcal Atomic # 7 Polarization: -61.73 SS G_CDS: 0.09 Total: -61.64 kcal Atomic # 8 Polarization: -15.01 SS G_CDS: -0.24 Total: -15.25 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -5.02 Total: 17.57 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -36.50 -7.77 -44.27 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485648280.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.212 kcal (2) G-P(sol) polarization free energy of solvation -36.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.270 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds