Wall clock time and date at job start Tue Mar 31 2020 19:30:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46502 * 109.47090 * 2 1 4 4 C 1.34942 * 126.03991 * 124.97441 * 3 2 1 5 5 C 1.35316 * 107.74613 * 179.75096 * 4 3 2 6 6 C 1.50706 * 126.04256 * 180.27593 * 5 4 3 7 7 C 1.50702 * 109.46797 * 270.16309 * 6 5 4 8 8 O 1.21281 * 120.00364 * 0.02562 * 7 6 5 9 9 N 1.34770 * 119.99636 * 179.97438 * 7 6 5 10 10 C 1.47156 * 120.98533 * 0.02562 * 9 7 6 11 11 C 1.53296 * 108.38313 * 230.51080 * 10 9 7 12 12 O 1.42962 * 109.22033 * 307.69152 * 11 10 9 13 13 C 1.42961 * 114.16626 * 62.58607 * 12 11 10 14 14 H 1.09005 * 109.51551 * 57.34044 * 13 12 11 15 15 C 1.53008 * 109.51323 * 177.44184 * 13 12 11 16 16 H 1.09005 * 109.46950 * 174.99709 * 15 13 12 17 17 C 1.52995 * 109.46759 * 55.00130 * 15 13 12 18 18 N 1.46498 * 109.47150 * 294.99897 * 15 13 12 19 19 C 1.36936 * 119.99989 * 205.00194 * 18 15 13 20 20 H 1.07993 * 120.00011 * 0.02562 * 19 18 15 21 21 C 1.38809 * 119.99751 * 179.97438 * 19 18 15 22 22 N 1.31616 * 120.00369 * 359.97438 * 21 19 18 23 23 Si 1.86808 * 119.99756 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47179 * 0.02562 * 23 21 19 25 25 H 1.48495 * 109.47141 * 120.00249 * 23 21 19 26 26 H 1.48505 * 109.47034 * 240.00079 * 23 21 19 27 27 C 1.47157 * 120.98190 * 179.71898 * 9 7 6 28 28 C 1.39870 * 107.92161 * 0.39436 * 5 4 3 29 29 N 1.30836 * 108.20019 * 359.59732 * 28 5 4 30 30 H 1.08994 * 109.46712 * 60.00446 * 1 2 3 31 31 H 1.09000 * 109.46932 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.46981 * 300.00422 * 1 2 3 33 33 H 1.09002 * 109.47249 * 239.99608 * 2 1 3 34 34 H 1.08999 * 109.47407 * 119.99475 * 2 1 3 35 35 H 1.08002 * 126.12737 * 359.97438 * 4 3 2 36 36 H 1.09002 * 109.46808 * 30.16339 * 6 5 4 37 37 H 1.08996 * 109.47016 * 150.16639 * 6 5 4 38 38 H 1.08995 * 109.67946 * 350.23067 * 10 9 7 39 39 H 1.08997 * 109.68129 * 110.74819 * 10 9 7 40 40 H 1.08991 * 109.51605 * 67.61858 * 11 10 9 41 41 H 1.08999 * 109.51080 * 187.72778 * 11 10 9 42 42 H 1.08997 * 109.47205 * 299.99175 * 17 15 13 43 43 H 1.09001 * 109.47594 * 60.00183 * 17 15 13 44 44 H 1.09004 * 109.46576 * 180.02562 * 17 15 13 45 45 H 0.97002 * 120.00000 * 25.00067 * 18 15 13 46 46 H 0.97004 * 119.99913 * 179.97438 * 22 21 19 47 47 H 1.09001 * 109.68399 * 249.21610 * 27 9 7 48 48 H 1.09002 * 109.67985 * 9.76609 * 27 9 7 49 49 H 1.08002 * 125.90382 * 179.86983 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.8727 1.9213 0.8941 5 6 3.0757 3.2122 0.5429 6 6 3.9648 4.1965 1.2583 7 6 3.1684 4.9160 2.3162 8 8 1.9946 4.6548 2.4741 9 7 3.7608 5.8488 3.0876 10 6 5.1837 6.1823 2.9151 11 6 5.8645 6.1207 4.2872 12 8 5.1313 6.9265 5.2130 13 6 3.7908 6.4844 5.4399 14 1 3.8024 5.4539 5.7951 15 6 3.1283 7.3793 6.4895 16 1 2.0807 7.0983 6.5974 17 6 3.2214 8.8405 6.0457 18 7 3.8130 7.2144 7.7741 19 6 3.1481 7.4745 8.9426 20 1 2.1190 7.8008 8.9172 21 6 3.7968 7.3178 10.1598 22 7 5.0506 6.9187 10.1909 23 14 2.8900 7.6734 11.7539 24 1 1.5018 8.1034 11.4484 25 1 2.8551 6.4453 12.5880 26 1 3.5922 8.7536 12.4924 27 6 3.0023 6.5689 4.1228 28 6 2.3125 3.4724 -0.6000 29 7 1.6809 2.3747 -0.9283 30 1 -0.3632 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8899 33 1 1.8934 -0.5139 -0.8900 34 1 1.8934 -0.5137 0.8900 35 1 3.3178 1.4131 1.7368 36 1 4.7932 3.6645 1.7261 37 1 4.3554 4.9200 0.5428 38 1 5.6501 5.4636 2.2413 39 1 5.2779 7.1868 2.5027 40 1 5.8837 5.0890 4.6382 41 1 6.8843 6.4964 4.2048 42 1 4.2690 9.1215 5.9379 43 1 2.7119 8.9632 5.0899 44 1 2.7498 9.4780 6.7937 45 1 4.7373 6.9210 7.7969 46 1 5.5039 6.8096 11.0415 47 1 2.8809 7.6119 3.8303 48 1 2.0234 6.1063 4.2491 49 1 2.2577 4.4153 -1.1238 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485648280.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:30:40 Heat of formation + Delta-G solvation = -7.704123 kcal Electronic energy + Delta-G solvation = -29283.861147 eV Core-core repulsion = 25247.480520 eV Total energy + Delta-G solvation = -4036.380626 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.20539 -41.23805 -39.48262 -37.08116 -35.64077 -35.51219 -34.33088 -33.01690 -31.75458 -31.06738 -29.91483 -28.93187 -27.39704 -26.27028 -24.86271 -24.61490 -23.57553 -21.69938 -21.43977 -21.06437 -19.94140 -19.27994 -18.22259 -17.91845 -17.47865 -16.92034 -16.57792 -16.52082 -16.29785 -16.00015 -15.76631 -15.35934 -15.17950 -15.02432 -14.82013 -14.50674 -14.28725 -14.12025 -13.97404 -13.81187 -13.55142 -13.26824 -13.11131 -12.99973 -12.89816 -12.83402 -12.63118 -12.42499 -12.34390 -12.27747 -12.12879 -11.79507 -11.62642 -11.50476 -11.43663 -11.11080 -10.91978 -10.77415 -10.33420 -9.49841 -9.29120 -8.99434 -7.91851 -5.20189 0.98521 1.47562 1.48163 1.58212 1.63725 1.69830 1.73038 2.15033 2.57089 2.85619 3.42025 3.57467 3.60681 3.75506 3.96471 3.97967 4.06330 4.07116 4.08520 4.14204 4.20360 4.28624 4.33403 4.39738 4.42850 4.47760 4.55165 4.64860 4.69557 4.70805 4.74868 4.80840 4.89273 4.92082 4.96939 5.03449 5.11664 5.18417 5.20091 5.26412 5.40026 5.52576 5.63465 5.74115 6.17298 6.29215 6.33185 6.45103 6.77558 7.23273 7.36365 8.12141 8.37263 9.31821 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.016287 B = 0.002281 C = 0.002131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1718.739985 B =12271.059378 C =13134.912012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.122 3.878 3 N -0.378 5.378 4 C 0.063 3.937 5 C -0.238 4.238 6 C -0.047 4.047 7 C 0.510 3.490 8 O -0.583 6.583 9 N -0.617 5.617 10 C 0.076 3.924 11 C 0.035 3.965 12 O -0.384 6.384 13 C 0.094 3.906 14 H 0.038 0.962 15 C 0.174 3.826 16 H 0.054 0.946 17 C -0.147 4.147 18 N -0.732 5.732 19 C -0.237 4.237 20 H 0.075 0.925 21 C -0.077 4.077 22 N -0.968 5.968 23 Si 0.971 3.029 24 H -0.267 1.267 25 H -0.294 1.294 26 H -0.294 1.294 27 C 0.093 3.907 28 C 0.049 3.951 29 N -0.333 5.333 30 H 0.050 0.950 31 H 0.100 0.900 32 H 0.042 0.958 33 H 0.096 0.904 34 H 0.121 0.879 35 H 0.195 0.805 36 H 0.127 0.873 37 H 0.131 0.869 38 H 0.134 0.866 39 H 0.092 0.908 40 H 0.048 0.952 41 H 0.128 0.872 42 H 0.047 0.953 43 H 0.069 0.931 44 H 0.035 0.965 45 H 0.376 0.624 46 H 0.250 0.750 47 H 0.088 0.912 48 H 0.080 0.920 49 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.940 -10.944 -25.782 28.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.003 3.997 3 N -0.160 5.160 4 C -0.084 4.084 5 C -0.250 4.250 6 C -0.087 4.087 7 C 0.301 3.699 8 O -0.463 6.463 9 N -0.351 5.351 10 C -0.046 4.046 11 C -0.042 4.042 12 O -0.303 6.303 13 C 0.034 3.966 14 H 0.056 0.944 15 C 0.066 3.934 16 H 0.072 0.928 17 C -0.207 4.207 18 N -0.372 5.372 19 C -0.369 4.369 20 H 0.093 0.907 21 C -0.269 4.269 22 N -0.619 5.619 23 Si 0.801 3.199 24 H -0.191 1.191 25 H -0.221 1.221 26 H -0.221 1.221 27 C -0.030 4.030 28 C -0.137 4.137 29 N -0.155 5.155 30 H 0.070 0.930 31 H 0.119 0.881 32 H 0.061 0.939 33 H 0.115 0.885 34 H 0.139 0.861 35 H 0.212 0.788 36 H 0.144 0.856 37 H 0.149 0.851 38 H 0.152 0.848 39 H 0.110 0.890 40 H 0.067 0.933 41 H 0.146 0.854 42 H 0.066 0.934 43 H 0.088 0.912 44 H 0.054 0.946 45 H 0.208 0.792 46 H 0.059 0.941 47 H 0.106 0.894 48 H 0.098 0.902 49 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -0.631 -11.614 -26.351 28.804 hybrid contribution 0.225 0.381 1.878 1.929 sum -0.406 -11.233 -24.473 26.931 Atomic orbital electron populations 1.22014 0.94223 1.03866 1.01788 1.22003 0.95862 0.76311 1.05557 1.48915 1.35371 1.10900 1.20824 1.22786 0.94691 0.95131 0.95773 1.19691 1.09092 0.95028 1.01151 1.19989 0.96498 0.97022 0.95219 1.21558 0.87640 0.78503 0.82220 1.90690 1.18937 1.65798 1.70830 1.48342 1.12098 1.39282 1.35393 1.22716 0.78997 1.04446 0.98398 1.23252 0.96917 0.95702 0.88361 1.88047 1.24332 1.53849 1.64092 1.22582 0.83278 0.96835 0.93864 0.94361 1.20435 0.94676 0.94040 0.84298 0.92815 1.22202 1.01292 0.97338 0.99867 1.42526 1.13247 1.80886 1.00562 1.19669 0.95833 1.35948 0.85463 0.90695 1.25540 0.97156 1.03416 1.00831 1.69842 1.11813 1.55242 1.25050 0.85101 0.78104 0.76793 0.79946 1.19128 1.22130 1.22082 1.22217 0.95776 0.97987 0.87065 1.24075 0.95063 0.97676 0.96877 1.77210 1.24623 0.98032 1.15617 0.93037 0.88129 0.93852 0.88542 0.86092 0.78834 0.85558 0.85130 0.84797 0.89003 0.93344 0.85448 0.93351 0.91235 0.94591 0.79223 0.94131 0.89376 0.90159 0.78962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.13 10.10 71.98 0.73 -1.41 16 2 C 0.12 1.45 7.23 86.38 0.62 2.08 16 3 N -0.38 -7.36 3.68 -348.05 -1.28 -8.64 16 4 C 0.06 1.14 11.36 83.54 0.95 2.09 16 5 C -0.24 -4.51 4.59 -20.14 -0.09 -4.60 16 6 C -0.05 -0.64 4.56 29.10 0.13 -0.51 16 7 C 0.51 11.97 7.70 87.66 0.68 12.65 16 8 O -0.58 -19.66 15.50 -3.03 -0.05 -19.71 16 9 N -0.62 -13.77 3.01 -816.47 -2.46 -16.23 16 10 C 0.08 1.11 6.54 86.35 0.56 1.67 16 11 C 0.03 0.72 6.99 72.08 0.50 1.22 16 12 O -0.38 -12.41 9.24 -148.98 -1.38 -13.79 16 13 C 0.09 3.21 2.62 30.85 0.08 3.29 16 14 H 0.04 1.47 8.14 -2.38 -0.02 1.45 16 15 C 0.17 7.10 2.77 44.99 0.12 7.23 16 16 H 0.05 2.22 8.08 -2.38 -0.02 2.20 16 17 C -0.15 -5.37 9.06 71.98 0.65 -4.72 16 18 N -0.73 -38.07 5.10 -322.94 -1.65 -39.71 16 19 C -0.24 -13.45 9.93 84.03 0.83 -12.62 16 20 H 0.08 4.09 7.83 -2.91 -0.02 4.07 16 21 C -0.08 -4.52 5.50 84.86 0.47 -4.06 16 22 N -0.97 -60.31 13.06 21.65 0.28 -60.02 16 23 Si 0.97 46.99 29.55 68.60 2.03 49.02 16 24 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 25 H -0.29 -14.19 7.11 99.48 0.71 -13.49 16 26 H -0.29 -14.17 7.11 99.48 0.71 -13.47 16 27 C 0.09 2.65 5.84 86.50 0.51 3.15 16 28 C 0.05 1.03 11.96 85.24 1.02 2.05 16 29 N -0.33 -8.03 12.42 -57.02 -0.71 -8.74 16 30 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.12 0.77 8.07 -2.39 -0.02 0.75 16 35 H 0.19 2.29 8.06 -2.91 -0.02 2.27 16 36 H 0.13 1.02 7.66 -2.39 -0.02 1.00 16 37 H 0.13 1.02 8.02 -2.39 -0.02 1.00 16 38 H 0.13 0.82 6.05 -2.39 -0.01 0.81 16 39 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.05 1.04 8.14 -2.39 -0.02 1.03 16 41 H 0.13 2.00 8.14 -2.39 -0.02 1.98 16 42 H 0.05 1.84 7.56 -2.39 -0.02 1.82 16 43 H 0.07 2.03 6.42 -2.39 -0.02 2.02 16 44 H 0.03 1.40 8.14 -2.38 -0.02 1.38 16 45 H 0.38 21.22 7.58 -92.71 -0.70 20.52 16 46 H 0.25 15.02 8.31 -92.71 -0.77 14.25 16 47 H 0.09 2.32 6.29 -2.39 -0.02 2.31 16 48 H 0.08 2.57 7.08 -2.39 -0.02 2.56 16 49 H 0.19 3.13 8.06 -2.91 -0.02 3.11 16 Total: -1.00 -82.70 397.97 2.80 -79.89 By element: Atomic # 1 Polarization: 30.19 SS G_CDS: 0.25 Total: 30.44 kcal Atomic # 6 Polarization: -0.26 SS G_CDS: 7.77 Total: 7.50 kcal Atomic # 7 Polarization: -127.54 SS G_CDS: -5.81 Total: -133.35 kcal Atomic # 8 Polarization: -32.08 SS G_CDS: -1.42 Total: -33.50 kcal Atomic # 14 Polarization: 46.99 SS G_CDS: 2.03 Total: 49.02 kcal Total: -82.70 2.80 -79.89 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485648280.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.187 kcal (2) G-P(sol) polarization free energy of solvation -82.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds