Wall clock time and date at job start Tue Mar 31 2020 19:55:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46509 * 109.47096 * 2 1 4 4 C 1.34775 * 119.99797 * 94.91091 * 3 2 1 5 5 O 1.21596 * 119.99977 * 187.14096 * 4 3 2 6 6 C 1.47436 * 119.99884 * 7.14582 * 4 3 2 7 7 C 1.38032 * 126.41630 * 334.84948 * 6 4 3 8 8 N 1.34255 * 107.41856 * 180.26732 * 7 6 4 9 9 C 1.46505 * 125.75894 * 179.74262 * 8 7 6 10 10 N 1.39932 * 108.49116 * 359.57981 * 8 7 6 11 11 C 1.30443 * 108.89480 * 0.43461 * 10 8 7 12 12 C 1.50707 * 125.98814 * 179.76362 * 11 10 8 13 13 O 1.42897 * 109.47267 * 269.96975 * 12 11 10 14 14 C 1.42894 * 114.00345 * 180.02562 * 13 12 11 15 15 C 1.46498 * 119.99917 * 274.91705 * 3 2 1 16 16 H 1.08997 * 110.88689 * 9.45963 * 15 3 2 17 17 C 1.55156 * 111.00018 * 245.58354 * 15 3 2 18 18 C 1.54324 * 102.94312 * 277.42725 * 17 15 3 19 19 N 1.47024 * 107.27195 * 337.80926 * 18 17 15 20 20 C 1.36939 * 125.65031 * 178.98296 * 19 18 17 21 21 H 1.07996 * 119.99799 * 195.08772 * 20 19 18 22 22 C 1.38808 * 119.99704 * 15.10000 * 20 19 18 23 23 N 1.31616 * 120.00458 * 350.06754 * 22 20 19 24 24 Si 1.86802 * 119.99824 * 170.07781 * 22 20 19 25 25 H 1.48494 * 109.47460 * 95.66151 * 24 22 20 26 26 H 1.48504 * 109.46955 * 215.66614 * 24 22 20 27 27 H 1.48504 * 109.47237 * 335.65829 * 24 22 20 28 28 C 1.47427 * 108.70292 * 358.94138 * 19 18 17 29 29 H 1.09004 * 109.47425 * 299.99751 * 1 2 3 30 30 H 1.09004 * 109.47400 * 59.99767 * 1 2 3 31 31 H 1.09001 * 109.47071 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47057 * 240.00434 * 2 1 3 33 33 H 1.09000 * 109.46987 * 119.99965 * 2 1 3 34 34 H 1.08000 * 126.29305 * 0.02562 * 7 6 4 35 35 H 1.08997 * 109.47230 * 89.99276 * 9 8 7 36 36 H 1.08995 * 109.47305 * 209.99859 * 9 8 7 37 37 H 1.09007 * 109.46495 * 329.99372 * 9 8 7 38 38 H 1.09000 * 109.47313 * 29.97660 * 12 11 10 39 39 H 1.09004 * 109.46823 * 149.97113 * 12 11 10 40 40 H 1.08995 * 109.47315 * 60.00077 * 14 13 12 41 41 H 1.09002 * 109.47677 * 180.02562 * 14 13 12 42 42 H 1.09001 * 109.46866 * 300.00268 * 14 13 12 43 43 H 1.08991 * 110.72419 * 35.78930 * 17 15 3 44 44 H 1.08997 * 110.71944 * 159.06838 * 17 15 3 45 45 H 1.09002 * 109.88386 * 97.22246 * 18 17 15 46 46 H 1.09003 * 109.88418 * 218.23815 * 18 17 15 47 47 H 0.96998 * 120.00084 * 179.97438 * 23 22 20 48 48 H 1.09004 * 110.36520 * 265.29348 * 28 19 18 49 49 H 1.08996 * 110.36817 * 142.96616 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3371 1.9833 1.1629 5 8 2.6175 3.1664 1.1782 6 6 2.3461 1.2073 2.4165 7 6 1.6254 0.0586 2.6743 8 7 1.9141 -0.3240 3.9284 9 6 1.3634 -1.4956 4.6143 10 7 2.8327 0.5829 4.4687 11 6 3.0940 1.5002 3.5789 12 6 4.0300 2.6675 3.7589 13 8 3.3061 3.7820 4.2841 14 6 4.1053 4.9480 4.4930 15 6 2.1600 2.1081 -1.2640 16 1 1.7097 1.5507 -2.0854 17 6 3.6497 2.4263 -1.5586 18 6 3.9009 3.7034 -0.7294 19 7 2.5945 4.3358 -0.4952 20 6 2.3803 5.4840 0.2196 21 1 1.3824 5.7402 0.5434 22 6 3.4457 6.3187 0.5276 23 7 4.6802 5.9184 0.3083 24 14 3.1275 8.0102 1.2536 25 1 3.2319 7.9414 2.7333 26 1 4.1323 8.9704 0.7305 27 1 1.7653 8.4635 0.8741 28 6 1.5533 3.5296 -1.1581 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 0.9500 -0.4386 1.9938 35 1 2.0037 -2.3583 4.4308 36 1 1.3151 -1.3001 5.6855 37 1 0.3614 -1.6999 4.2367 38 1 4.8255 2.3920 4.4514 39 1 4.4639 2.9372 2.7960 40 1 4.5403 5.2649 3.5452 41 1 3.4828 5.7484 4.8930 42 1 4.9025 4.7200 5.2005 43 1 4.2920 1.6137 -1.2194 44 1 3.7999 2.6204 -2.6206 45 1 4.3623 3.4422 0.2230 46 1 4.5503 4.3824 -1.2819 47 1 5.4247 6.5019 0.5232 48 1 1.3412 3.9263 -2.1510 49 1 0.6461 3.5109 -0.5543 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033878021.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:55:33 Heat of formation + Delta-G solvation = 105.218825 kcal Electronic energy + Delta-G solvation = -32449.566331 eV Core-core repulsion = 28418.082412 eV Total energy + Delta-G solvation = -4031.483920 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.33616 -39.34407 -37.12560 -35.88073 -35.33804 -33.39527 -32.22944 -30.19990 -29.96468 -28.67379 -28.60600 -27.02720 -26.07336 -24.71998 -24.11710 -23.19083 -21.95758 -21.19681 -19.72467 -19.51369 -18.23294 -16.87218 -16.37394 -16.28720 -15.96257 -15.32615 -15.17976 -15.15768 -14.74140 -14.44090 -14.31638 -14.13492 -13.66355 -13.51531 -13.11330 -12.87580 -12.72255 -12.66441 -12.23300 -11.82689 -11.80034 -11.63678 -11.62650 -11.55581 -11.44164 -11.12250 -10.81419 -10.67031 -10.59485 -10.53341 -10.50906 -9.89666 -9.87934 -9.63474 -9.30122 -9.24951 -9.03395 -8.60072 -8.23643 -8.15750 -7.67657 -6.07587 -5.33541 -2.56419 1.76191 2.38951 2.49852 3.59736 3.61309 3.65343 3.67327 4.06871 4.39551 4.60419 4.72873 4.82274 4.93943 4.97129 5.12134 5.19850 5.23607 5.25313 5.39487 5.47136 5.64464 5.65407 5.73852 5.77872 5.81410 5.82640 5.86529 5.96623 6.00174 6.13652 6.18133 6.21898 6.27774 6.36868 6.50777 6.63855 6.65063 6.75038 6.77563 6.89785 6.94307 7.45218 7.74875 7.76624 7.90499 8.05101 8.17052 8.24336 8.67322 9.37544 9.61803 10.23393 10.93378 11.80086 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.011116 B = 0.005978 C = 0.004312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2518.384270 B = 4683.040761 C = 6492.507837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.088 3.912 3 N -0.609 5.609 4 C 0.532 3.468 5 O -0.397 6.397 6 C -0.244 4.244 7 C 0.055 3.945 8 N -0.369 5.369 9 C 0.101 3.899 10 N -0.289 5.289 11 C 0.128 3.872 12 C 0.149 3.851 13 O -0.373 6.373 14 C 0.039 3.961 15 C 0.135 3.865 16 H 0.079 0.921 17 C -0.160 4.160 18 C 0.187 3.813 19 N -0.561 5.561 20 C -0.171 4.171 21 H 0.062 0.938 22 C -0.008 4.008 23 N -0.922 5.922 24 Si 0.889 3.111 25 H -0.294 1.294 26 H -0.296 1.296 27 H -0.286 1.286 28 C 0.133 3.867 29 H 0.058 0.942 30 H 0.064 0.936 31 H 0.060 0.940 32 H 0.069 0.931 33 H 0.086 0.914 34 H 0.194 0.806 35 H 0.075 0.925 36 H 0.090 0.910 37 H 0.087 0.913 38 H 0.051 0.949 39 H 0.086 0.914 40 H 0.060 0.940 41 H 0.079 0.921 42 H 0.029 0.971 43 H 0.055 0.945 44 H 0.061 0.939 45 H 0.038 0.962 46 H 0.044 0.956 47 H 0.242 0.758 48 H 0.021 0.979 49 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.697 -18.424 2.715 19.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.036 4.036 3 N -0.347 5.347 4 C 0.316 3.684 5 O -0.262 6.262 6 C -0.259 4.259 7 C -0.093 4.093 8 N -0.150 5.150 9 C -0.041 4.041 10 N -0.113 5.113 11 C -0.039 4.039 12 C 0.071 3.929 13 O -0.291 6.291 14 C -0.057 4.057 15 C 0.031 3.969 16 H 0.097 0.903 17 C -0.199 4.199 18 C 0.063 3.937 19 N -0.286 5.286 20 C -0.300 4.300 21 H 0.080 0.920 22 C -0.202 4.202 23 N -0.572 5.572 24 Si 0.721 3.279 25 H -0.222 1.222 26 H -0.223 1.223 27 H -0.212 1.212 28 C 0.006 3.994 29 H 0.077 0.923 30 H 0.083 0.917 31 H 0.079 0.921 32 H 0.087 0.913 33 H 0.104 0.896 34 H 0.211 0.789 35 H 0.094 0.906 36 H 0.108 0.892 37 H 0.106 0.894 38 H 0.069 0.931 39 H 0.104 0.896 40 H 0.079 0.921 41 H 0.097 0.903 42 H 0.047 0.953 43 H 0.073 0.927 44 H 0.079 0.921 45 H 0.056 0.944 46 H 0.062 0.938 47 H 0.052 0.948 48 H 0.038 0.962 49 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -5.418 -18.056 4.133 19.299 hybrid contribution -0.245 0.797 -0.306 0.888 sum -5.663 -17.259 3.826 18.563 Atomic orbital electron populations 1.22336 0.96778 1.01411 1.03164 1.21930 0.93736 0.84826 1.03090 1.47670 1.68281 1.12697 1.06083 1.17663 0.80793 0.88121 0.81847 1.91621 1.40163 1.10802 1.83566 1.20763 1.07120 0.99438 0.98585 1.23855 1.01328 0.96700 0.87385 1.48282 1.34017 1.22048 1.10665 1.21881 0.98661 0.84380 0.99158 1.77080 1.09769 1.02976 1.21467 1.21992 0.96969 0.94709 0.90241 1.20515 0.90021 0.82546 0.99858 1.87865 1.35836 1.20732 1.84635 1.22687 0.95107 0.87193 1.00735 1.22251 0.96854 0.93626 0.84161 0.90302 1.23361 0.95225 1.00931 1.00423 1.21170 0.88490 0.88175 0.95881 1.44059 1.00740 1.25539 1.58259 1.18732 0.93337 0.93247 1.24728 0.91980 1.24602 0.95423 0.97665 1.02524 1.69979 0.96859 1.34934 1.55431 0.86408 0.76703 0.86239 0.78534 1.22222 1.22309 1.21248 1.21712 0.93234 0.89015 0.95474 0.92297 0.91711 0.92141 0.91281 0.89588 0.78938 0.90646 0.89176 0.89435 0.93102 0.89573 0.92119 0.90259 0.95280 0.92654 0.92071 0.94362 0.93784 0.94767 0.96195 0.94854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.69 9.15 37.16 0.34 -1.35 16 2 C 0.09 0.99 5.58 -4.04 -0.02 0.97 16 3 N -0.61 -9.98 2.56 -164.93 -0.42 -10.41 16 4 C 0.53 10.66 6.97 -12.52 -0.09 10.58 16 5 O -0.40 -9.86 7.67 5.28 0.04 -9.82 16 6 C -0.24 -4.37 5.80 -105.07 -0.61 -4.98 16 7 C 0.06 0.74 8.98 -16.57 -0.15 0.59 16 8 N -0.37 -4.87 3.98 -67.60 -0.27 -5.14 16 9 C 0.10 0.74 11.44 59.85 0.68 1.42 16 10 N -0.29 -4.98 12.50 33.90 0.42 -4.56 16 11 C 0.13 2.44 6.89 -82.02 -0.56 1.87 16 12 C 0.15 2.98 5.86 36.01 0.21 3.19 16 13 O -0.37 -8.20 10.69 -35.23 -0.38 -8.57 16 14 C 0.04 0.77 11.01 101.05 1.11 1.89 16 15 C 0.14 2.35 3.79 -65.78 -0.25 2.10 16 16 H 0.08 1.11 8.00 -51.93 -0.42 0.70 16 17 C -0.16 -3.07 6.52 -24.90 -0.16 -3.23 16 18 C 0.19 4.70 4.29 -3.06 -0.01 4.69 16 19 N -0.56 -14.67 1.73 -170.07 -0.29 -14.97 16 20 C -0.17 -5.00 8.67 -15.06 -0.13 -5.13 16 21 H 0.06 1.85 7.85 -52.49 -0.41 1.44 16 22 C -0.01 -0.23 5.49 -17.43 -0.10 -0.33 16 23 N -0.92 -27.77 10.50 55.49 0.58 -27.18 16 24 Si 0.89 23.33 29.56 -169.99 -5.03 18.31 16 25 H -0.29 -7.67 7.11 56.52 0.40 -7.27 16 26 H -0.30 -7.83 7.11 56.52 0.40 -7.43 16 27 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 28 C 0.13 2.87 6.18 -2.53 -0.02 2.85 16 29 H 0.06 0.63 7.34 -51.93 -0.38 0.25 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.07 0.67 8.11 -51.93 -0.42 0.25 16 33 H 0.09 0.91 4.02 -51.93 -0.21 0.70 16 34 H 0.19 1.88 3.95 -52.49 -0.21 1.67 16 35 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.09 1.92 7.29 -51.93 -0.38 1.54 16 40 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 41 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 42 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 44 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 45 H 0.04 1.08 6.43 -51.93 -0.33 0.75 16 46 H 0.04 1.25 6.99 -51.93 -0.36 0.89 16 47 H 0.24 7.17 8.31 -40.82 -0.34 6.83 16 48 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 49 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 381.25 15.07 5.75 5.75 Total: -1.00 -36.61 381.25 -7.10 -43.71 By element: Atomic # 1 Polarization: 5.50 SS G_CDS: -7.75 Total: -2.25 kcal Atomic # 6 Polarization: 14.88 SS G_CDS: 0.25 Total: 15.13 kcal Atomic # 7 Polarization: -62.27 SS G_CDS: 0.02 Total: -62.25 kcal Atomic # 8 Polarization: -18.06 SS G_CDS: -0.34 Total: -18.39 kcal Atomic # 14 Polarization: 23.33 SS G_CDS: -5.03 Total: 18.31 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -36.61 -7.10 -43.71 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033878021.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.928 kcal (2) G-P(sol) polarization free energy of solvation -36.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.709 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds