Wall clock time and date at job start Tue Mar 31 2020 19:55:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46501 * 109.47000 * 2 1 4 4 C 1.34775 * 119.99906 * 96.71857 * 3 2 1 5 5 O 1.21605 * 120.00064 * 184.18856 * 4 3 2 6 6 C 1.47434 * 120.00106 * 4.18397 * 4 3 2 7 7 C 1.38045 * 126.41639 * 316.02756 * 6 4 3 8 8 N 1.34248 * 107.41768 * 179.97438 * 7 6 4 9 9 C 1.46508 * 125.75314 * 179.97438 * 8 7 6 10 10 N 1.39938 * 108.49626 * 359.97438 * 8 7 6 11 11 C 1.30446 * 108.89089 * 359.75229 * 10 8 7 12 12 C 1.50706 * 125.98581 * 180.26022 * 11 10 8 13 13 O 1.42895 * 109.47028 * 270.14763 * 12 11 10 14 14 C 1.42904 * 113.99783 * 180.02562 * 13 12 11 15 15 C 1.46502 * 120.00144 * 276.44068 * 3 2 1 16 16 H 1.08996 * 110.63941 * 1.68469 * 15 3 2 17 17 C 1.55150 * 110.72109 * 125.02534 * 15 3 2 18 18 C 1.54903 * 101.58443 * 153.86648 * 17 15 3 19 19 N 1.47432 * 104.83070 * 322.98714 * 18 17 15 20 20 C 1.36930 * 125.64757 * 204.16217 * 19 18 17 21 21 H 1.08003 * 120.00232 * 179.97438 * 20 19 18 22 22 C 1.38811 * 120.00511 * 359.96175 * 20 19 18 23 23 N 1.31624 * 119.99635 * 359.97438 * 22 20 19 24 24 Si 1.86793 * 120.00335 * 179.97438 * 22 20 19 25 25 H 1.48505 * 109.47360 * 359.97438 * 24 22 20 26 26 H 1.48505 * 109.47249 * 119.99973 * 24 22 20 27 27 H 1.48507 * 109.47266 * 239.99829 * 24 22 20 28 28 C 1.47023 * 108.69982 * 24.13222 * 19 18 17 29 29 H 1.08995 * 109.47322 * 299.99844 * 1 2 3 30 30 H 1.08998 * 109.46844 * 60.00014 * 1 2 3 31 31 H 1.09000 * 109.46750 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.47322 * 240.00156 * 2 1 3 33 33 H 1.09001 * 109.47502 * 120.00302 * 2 1 3 34 34 H 1.08004 * 126.28484 * 359.93735 * 7 6 4 35 35 H 1.09008 * 109.46529 * 90.00085 * 9 8 7 36 36 H 1.09000 * 109.47325 * 209.99680 * 9 8 7 37 37 H 1.08997 * 109.46900 * 330.00453 * 9 8 7 38 38 H 1.09005 * 109.46728 * 30.14908 * 12 11 10 39 39 H 1.08998 * 109.46680 * 150.14373 * 12 11 10 40 40 H 1.08997 * 109.47325 * 179.97438 * 14 13 12 41 41 H 1.09001 * 109.46750 * 299.99560 * 14 13 12 42 42 H 1.09002 * 109.47475 * 59.99285 * 14 13 12 43 43 H 1.08998 * 111.00361 * 271.94229 * 17 15 3 44 44 H 1.09003 * 111.00451 * 35.78703 * 17 15 3 45 45 H 1.09003 * 110.36682 * 204.15381 * 18 17 15 46 46 H 1.08992 * 110.36913 * 81.82893 * 18 17 15 47 47 H 0.96999 * 119.99755 * 179.97438 * 23 22 20 48 48 H 1.09000 * 109.87665 * 239.51874 * 28 19 18 49 49 H 1.08993 * 109.88219 * 118.35562 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3717 1.9710 1.1592 5 8 2.7043 3.1407 1.1696 6 6 2.3548 1.1982 2.4146 7 6 1.3647 0.3303 2.8295 8 7 1.7363 -0.1630 4.0215 9 6 0.9760 -1.1235 4.8251 10 7 2.9723 0.3949 4.3670 11 6 3.3522 1.2021 3.4153 12 6 4.6296 2.0014 3.3895 13 8 4.4075 3.2740 4.0004 14 6 5.5624 4.1152 4.0273 15 6 2.1283 2.1193 -1.2607 16 1 1.7808 1.5094 -2.0946 17 6 1.3407 3.4539 -1.1860 18 6 2.1001 4.3216 -2.2203 19 7 3.5159 3.9406 -2.0657 20 6 4.5926 4.7185 -2.3983 21 1 5.5951 4.3469 -2.2454 22 6 4.3957 5.9846 -2.9322 23 7 3.1740 6.4372 -3.1193 24 14 5.8645 7.0460 -3.3853 25 1 7.1188 6.3123 -3.0790 26 1 5.8176 7.3632 -4.8353 27 1 5.8249 8.3066 -2.6013 28 6 3.5801 2.5874 -1.4945 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 1.8934 -0.5139 0.8899 34 1 0.4576 0.0925 2.2938 35 1 1.2695 -2.1375 4.5530 36 1 1.1826 -0.9568 5.8822 37 1 -0.0895 -0.9910 4.6377 38 1 5.4046 1.4655 3.9375 39 1 4.9477 2.1446 2.3568 40 1 5.3114 5.0617 4.5060 41 1 6.3571 3.6234 4.5883 42 1 5.8996 4.3022 3.0077 43 1 0.3017 3.3116 -1.4831 44 1 1.4039 3.8896 -0.1888 45 1 1.9658 5.3804 -1.9988 46 1 1.7550 4.0977 -3.2297 47 1 3.0364 7.3221 -3.4921 48 1 4.1194 2.6101 -0.5475 49 1 4.0790 1.9142 -2.1915 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033878024.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:55:37 Heat of formation + Delta-G solvation = 53.693010 kcal Electronic energy + Delta-G solvation = -30971.848821 eV Core-core repulsion = 26938.130574 eV Total energy + Delta-G solvation = -4033.718247 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.62042 -39.52114 -37.61859 -36.54263 -35.43946 -33.75764 -32.39134 -30.57176 -30.26495 -29.08521 -28.80808 -27.10118 -26.37396 -25.09928 -24.31716 -23.42029 -22.17229 -21.15447 -20.00220 -19.90781 -18.59482 -17.23537 -16.78925 -16.54250 -16.25786 -15.68315 -15.62305 -15.29818 -15.12580 -14.63729 -14.50338 -14.38784 -14.06107 -13.56510 -13.21771 -13.16237 -13.05893 -12.91550 -12.76313 -12.25564 -12.11413 -12.00218 -11.95106 -11.65109 -11.39118 -11.32438 -11.18522 -10.97768 -10.88263 -10.76059 -10.64665 -10.36511 -9.97031 -9.69184 -9.58516 -9.53752 -9.42330 -8.98189 -8.63812 -8.49369 -8.17160 -6.64118 -5.49157 -2.89170 1.49364 2.05285 2.18297 3.22976 3.42215 3.49474 3.54428 3.57174 4.03914 4.28264 4.46434 4.63123 4.75674 4.77450 4.83865 4.96893 5.01674 5.04162 5.11464 5.30438 5.38025 5.45908 5.50279 5.55431 5.59703 5.63210 5.63648 5.65975 5.72875 5.76607 5.89439 5.91436 6.00722 6.08969 6.26796 6.44385 6.63432 6.67487 6.73946 6.76823 6.91264 7.25194 7.33489 7.44170 7.66887 7.79246 7.83784 8.03575 8.53718 8.70121 9.38159 9.99600 10.65193 11.54811 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.012869 B = 0.003906 C = 0.003154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2175.267732 B = 7167.299234 C = 8874.329891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.099 3.901 3 N -0.603 5.603 4 C 0.580 3.420 5 O -0.492 6.492 6 C -0.256 4.256 7 C 0.078 3.922 8 N -0.363 5.363 9 C 0.099 3.901 10 N -0.282 5.282 11 C 0.123 3.877 12 C 0.146 3.854 13 O -0.375 6.375 14 C 0.035 3.965 15 C 0.138 3.862 16 H 0.087 0.913 17 C -0.157 4.157 18 C 0.158 3.842 19 N -0.596 5.596 20 C -0.211 4.211 21 H 0.075 0.925 22 C -0.014 4.014 23 N -0.922 5.922 24 Si 0.912 3.088 25 H -0.281 1.281 26 H -0.292 1.292 27 H -0.291 1.291 28 C 0.135 3.865 29 H 0.056 0.944 30 H 0.066 0.934 31 H 0.064 0.936 32 H 0.076 0.924 33 H 0.079 0.921 34 H 0.188 0.812 35 H 0.079 0.921 36 H 0.092 0.908 37 H 0.090 0.910 38 H 0.062 0.938 39 H 0.075 0.925 40 H 0.087 0.913 41 H 0.037 0.963 42 H 0.050 0.950 43 H 0.049 0.951 44 H 0.087 0.913 45 H 0.106 0.894 46 H 0.008 0.992 47 H 0.249 0.751 48 H 0.033 0.967 49 H 0.015 0.985 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.342 -18.887 13.817 24.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.025 4.025 3 N -0.337 5.337 4 C 0.367 3.633 5 O -0.365 6.365 6 C -0.271 4.271 7 C -0.071 4.071 8 N -0.143 5.143 9 C -0.043 4.043 10 N -0.105 5.105 11 C -0.044 4.044 12 C 0.068 3.932 13 O -0.293 6.293 14 C -0.062 4.062 15 C 0.035 3.965 16 H 0.105 0.895 17 C -0.197 4.197 18 C 0.033 3.967 19 N -0.321 5.321 20 C -0.340 4.340 21 H 0.093 0.907 22 C -0.209 4.209 23 N -0.572 5.572 24 Si 0.743 3.257 25 H -0.207 1.207 26 H -0.220 1.220 27 H -0.219 1.219 28 C 0.008 3.992 29 H 0.074 0.926 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.095 0.905 33 H 0.097 0.903 34 H 0.204 0.796 35 H 0.097 0.903 36 H 0.111 0.889 37 H 0.108 0.892 38 H 0.080 0.920 39 H 0.093 0.907 40 H 0.105 0.895 41 H 0.056 0.944 42 H 0.068 0.932 43 H 0.068 0.932 44 H 0.106 0.894 45 H 0.124 0.876 46 H 0.026 0.974 47 H 0.060 0.940 48 H 0.051 0.949 49 H 0.033 0.967 Dipole moment (debyes) X Y Z Total from point charges -6.052 -18.585 15.033 24.658 hybrid contribution 0.534 0.537 -1.164 1.389 sum -5.518 -18.048 13.869 23.421 Atomic orbital electron populations 1.22350 0.96358 1.01819 1.02853 1.21644 0.94045 0.83573 1.03243 1.47872 1.65557 1.13469 1.06797 1.17294 0.77918 0.86310 0.81828 1.90911 1.45116 1.14860 1.85601 1.20391 0.98586 1.07693 1.00411 1.23411 1.00378 0.95361 0.87931 1.48273 1.15957 1.34572 1.15533 1.21963 0.94960 0.90667 0.96660 1.77109 0.96452 1.14932 1.22029 1.21885 0.96407 0.95435 0.90683 1.20526 0.90281 0.83633 0.98805 1.87942 1.35080 1.26037 1.80209 1.22748 0.87799 0.94326 1.01320 1.22147 0.97935 0.93120 0.83298 0.89540 1.23476 0.97055 0.95545 1.03589 1.21828 0.81923 1.00484 0.92438 1.44298 1.02654 1.11835 1.73361 1.19086 0.85851 0.95543 1.33537 0.90718 1.24749 0.96646 0.97537 1.01956 1.69820 1.18052 1.18222 1.51103 0.86024 0.81546 0.80522 0.77586 1.20659 1.21950 1.21851 1.21464 0.93160 0.88160 0.96465 0.92555 0.91471 0.91665 0.90545 0.90274 0.79555 0.90276 0.88930 0.89150 0.91984 0.90679 0.89486 0.94420 0.93184 0.93184 0.89427 0.87623 0.97438 0.94000 0.94926 0.96694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.44 9.49 37.16 0.35 -1.09 16 2 C 0.10 1.03 5.60 -4.04 -0.02 1.00 16 3 N -0.60 -9.32 2.54 -165.29 -0.42 -9.74 16 4 C 0.58 10.35 6.37 -12.52 -0.08 10.27 16 5 O -0.49 -11.19 13.24 5.27 0.07 -11.12 16 6 C -0.26 -3.86 5.19 -105.06 -0.55 -4.40 16 7 C 0.08 0.86 9.12 -16.57 -0.15 0.71 16 8 N -0.36 -3.87 3.98 -67.59 -0.27 -4.14 16 9 C 0.10 0.51 11.44 59.85 0.68 1.20 16 10 N -0.28 -4.00 12.50 33.90 0.42 -3.58 16 11 C 0.12 1.92 6.89 -82.02 -0.57 1.36 16 12 C 0.15 2.25 6.11 36.01 0.22 2.47 16 13 O -0.38 -6.44 10.69 -35.23 -0.38 -6.81 16 14 C 0.03 0.47 11.01 101.05 1.11 1.58 16 15 C 0.14 2.55 3.44 -66.10 -0.23 2.33 16 16 H 0.09 1.41 7.96 -51.93 -0.41 1.00 16 17 C -0.16 -3.32 6.40 -24.59 -0.16 -3.48 16 18 C 0.16 4.12 5.89 -2.53 -0.01 4.11 16 19 N -0.60 -16.33 3.39 -170.08 -0.58 -16.91 16 20 C -0.21 -6.25 10.27 -15.06 -0.15 -6.40 16 21 H 0.07 2.15 7.83 -52.48 -0.41 1.73 16 22 C -0.01 -0.41 5.49 -17.43 -0.10 -0.51 16 23 N -0.92 -28.18 10.09 55.49 0.56 -27.62 16 24 Si 0.91 23.11 29.55 -169.99 -5.02 18.09 16 25 H -0.28 -6.91 7.11 56.52 0.40 -6.50 16 26 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 27 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 28 C 0.13 3.07 6.51 -3.06 -0.02 3.05 16 29 H 0.06 0.46 6.16 -51.93 -0.32 0.14 16 30 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.08 0.72 8.09 -51.93 -0.42 0.30 16 33 H 0.08 0.75 5.26 -51.93 -0.27 0.48 16 34 H 0.19 1.45 4.66 -52.48 -0.24 1.20 16 35 H 0.08 0.28 8.14 -51.92 -0.42 -0.15 16 36 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 38 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 39 H 0.08 1.22 8.01 -51.93 -0.42 0.81 16 40 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 41 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 43 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 44 H 0.09 2.06 5.68 -51.93 -0.29 1.77 16 45 H 0.11 3.13 5.87 -51.93 -0.31 2.82 16 46 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 47 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 48 H 0.03 0.80 6.39 -51.93 -0.33 0.46 16 49 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 LS Contribution 388.45 15.07 5.85 5.85 Total: -1.00 -38.16 388.45 -7.06 -45.22 By element: Atomic # 1 Polarization: 6.21 SS G_CDS: -7.64 Total: -1.42 kcal Atomic # 6 Polarization: 11.84 SS G_CDS: 0.34 Total: 12.18 kcal Atomic # 7 Polarization: -61.71 SS G_CDS: -0.28 Total: -61.99 kcal Atomic # 8 Polarization: -17.62 SS G_CDS: -0.31 Total: -17.93 kcal Atomic # 14 Polarization: 23.11 SS G_CDS: -5.02 Total: 18.09 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -38.16 -7.06 -45.22 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033878024.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.911 kcal (2) G-P(sol) polarization free energy of solvation -38.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.218 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds