Wall clock time and date at job start Tue Mar 31 2020 19:53:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46503 * 109.47146 * 2 1 4 4 C 1.36942 * 120.00171 * 275.31082 * 3 2 1 5 5 H 1.08000 * 119.99653 * 37.57400 * 4 3 2 6 6 C 1.38804 * 120.00075 * 217.57299 * 4 3 2 7 7 N 1.31620 * 120.00095 * 21.43474 * 6 4 3 8 8 Si 1.86802 * 120.00064 * 201.42975 * 6 4 3 9 9 H 1.48494 * 109.47038 * 0.02562 * 8 6 4 10 10 H 1.48497 * 109.46782 * 120.00357 * 8 6 4 11 11 H 1.48501 * 109.47357 * 240.00261 * 8 6 4 12 12 C 1.46497 * 119.99921 * 95.31130 * 3 2 1 13 13 C 1.53010 * 109.47025 * 269.99777 * 12 3 2 14 14 N 1.46497 * 109.47025 * 180.02562 * 13 12 3 15 15 C 1.34777 * 119.99765 * 180.02562 * 14 13 12 16 16 O 1.21278 * 120.00276 * 359.97438 * 15 14 13 17 17 C 1.50703 * 119.99914 * 180.02562 * 15 14 13 18 18 H 1.08998 * 109.47085 * 299.99710 * 17 15 14 19 19 C 1.53000 * 109.47379 * 59.99695 * 17 15 14 20 20 C 1.52997 * 109.46980 * 179.97438 * 17 15 14 21 21 C 1.53005 * 109.47326 * 175.00100 * 20 17 15 22 22 C 1.50694 * 109.47181 * 179.97438 * 21 20 17 23 23 C 1.38265 * 119.98776 * 269.72336 * 22 21 20 24 24 C 1.38225 * 120.05342 * 179.73163 * 23 22 21 25 25 C 1.38214 * 120.02122 * 0.54322 * 24 23 22 26 26 C 1.38433 * 119.97769 * 359.72710 * 25 24 23 27 27 F 1.35100 * 120.02503 * 180.02562 * 26 25 24 28 28 C 1.38171 * 119.98816 * 90.00035 * 22 21 20 29 29 H 1.09000 * 109.47303 * 59.99938 * 1 2 3 30 30 H 1.09005 * 109.46999 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47523 * 300.00047 * 1 2 3 32 32 H 1.09006 * 109.47595 * 240.00066 * 2 1 3 33 33 H 1.09000 * 109.47303 * 120.00062 * 2 1 3 34 34 H 0.97000 * 120.00225 * 179.97438 * 7 6 4 35 35 H 1.08997 * 109.47197 * 150.00426 * 12 3 2 36 36 H 1.09001 * 109.47674 * 29.99707 * 12 3 2 37 37 H 1.09007 * 109.46467 * 60.00204 * 13 12 3 38 38 H 1.08998 * 109.47328 * 300.00289 * 13 12 3 39 39 H 0.97000 * 120.00218 * 0.02562 * 14 13 12 40 40 H 1.08996 * 109.47400 * 180.02562 * 19 17 15 41 41 H 1.09000 * 109.47061 * 300.00317 * 19 17 15 42 42 H 1.09008 * 109.46803 * 60.00038 * 19 17 15 43 43 H 1.09002 * 109.47660 * 54.99677 * 20 17 15 44 44 H 1.09002 * 109.47077 * 294.99709 * 20 17 15 45 45 H 1.09002 * 109.46724 * 299.99826 * 21 20 17 46 46 H 1.09001 * 109.46886 * 59.99739 * 21 20 17 47 47 H 1.08002 * 119.97051 * 359.97438 * 23 22 21 48 48 H 1.08000 * 119.98637 * 180.27287 * 24 23 22 49 49 H 1.08007 * 120.01222 * 179.75388 * 25 24 23 50 50 H 1.08003 * 120.01470 * 359.97438 * 28 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1430 2.0634 -1.1808 5 1 1.4104 1.9279 -1.9627 6 6 3.2110 2.9291 -1.3728 7 7 4.3025 2.7982 -0.6491 8 14 3.0991 4.2797 -2.6584 9 1 1.7770 4.2143 -3.3313 10 1 3.2547 5.6024 -2.0014 11 1 4.1764 4.0966 -3.6639 12 6 2.3732 2.0327 1.2633 13 6 1.1425 2.7383 1.8366 14 7 1.4975 3.3903 3.0995 15 6 0.5649 4.0770 3.7888 16 8 -0.5681 4.1556 3.3633 17 6 0.9302 4.7482 5.0877 18 1 1.2834 3.9994 5.7968 19 6 2.0361 5.7755 4.8377 20 6 -0.3004 5.4536 5.6610 21 6 0.0367 6.0288 7.0382 22 6 -1.1753 6.7242 7.6025 23 6 -1.3793 8.0687 7.3529 24 6 -2.4934 8.7066 7.8652 25 6 -3.3990 8.0035 8.6372 26 6 -3.1928 6.6586 8.8924 27 9 -4.0777 5.9703 9.6464 28 6 -2.0792 6.0193 8.3740 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 5.0490 3.4029 -0.7835 35 1 3.1615 2.7641 1.0859 36 1 2.7254 1.2833 1.9722 37 1 0.3540 2.0068 2.0139 38 1 0.7901 3.4877 1.1277 39 1 2.4037 3.3277 3.4397 40 1 2.3006 6.2606 5.7772 41 1 2.9129 5.2732 4.4290 42 1 1.6828 6.5242 4.1286 43 1 -1.1178 4.7388 5.7560 44 1 -0.6001 6.2614 4.9933 45 1 0.3363 5.2210 7.7058 46 1 0.8540 6.7437 6.9431 47 1 -0.6697 8.6200 6.7538 48 1 -2.6540 9.7558 7.6659 49 1 -4.2674 8.5030 9.0407 50 1 -1.9175 4.9700 8.5722 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663457397.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:53:10 Heat of formation + Delta-G solvation = -64.436430 kcal Electronic energy + Delta-G solvation = -28286.076495 eV Core-core repulsion = 24227.315810 eV Total energy + Delta-G solvation = -4058.760685 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -49.15645 -39.85249 -39.27264 -36.43574 -35.61416 -34.08456 -32.52143 -31.90018 -30.84674 -29.68391 -28.55949 -27.38210 -25.47252 -24.30234 -23.06591 -22.86730 -21.66543 -20.95222 -20.35520 -19.49150 -17.70271 -16.98030 -16.67328 -16.48009 -16.29419 -15.87010 -15.58642 -15.42951 -14.99518 -14.53063 -14.33312 -14.01274 -13.86310 -13.71006 -13.62661 -13.38527 -13.01258 -12.85793 -12.68468 -12.41954 -12.38485 -12.07465 -12.03841 -11.73455 -11.68062 -11.51617 -11.35700 -11.14093 -10.93184 -10.80223 -10.79403 -10.63912 -10.50109 -10.09288 -9.87134 -9.82587 -9.39744 -9.23767 -8.94804 -8.57743 -8.44057 -6.64130 -5.85506 -3.44065 0.84702 0.89090 2.98884 3.24356 3.32021 3.41308 3.45433 3.60317 3.92512 4.31818 4.43407 4.44840 4.67520 4.76078 4.81266 4.84317 4.94721 5.01791 5.16539 5.26194 5.27452 5.33332 5.44488 5.53701 5.57934 5.71361 5.73535 5.76030 5.79424 5.86466 5.98626 6.00231 6.09437 6.12387 6.16352 6.22696 6.26323 6.37679 6.42278 6.50410 6.59041 6.68006 6.89731 6.91248 7.02469 7.15731 7.52807 7.78877 7.95979 8.46247 8.62442 9.12942 9.74804 10.32867 11.14495 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.016379 B = 0.002037 C = 0.001930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1709.119137 B =13739.172804 C =14500.980884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.141 3.859 3 N -0.580 5.580 4 C -0.258 4.258 5 H 0.062 0.938 6 C 0.012 3.988 7 N -0.888 5.888 8 Si 0.896 3.104 9 H -0.275 1.275 10 H -0.287 1.287 11 H -0.289 1.289 12 C 0.138 3.862 13 C 0.097 3.903 14 N -0.720 5.720 15 C 0.509 3.491 16 O -0.549 6.549 17 C -0.111 4.111 18 H 0.095 0.905 19 C -0.147 4.147 20 C -0.093 4.093 21 C -0.085 4.085 22 C -0.047 4.047 23 C -0.127 4.127 24 C -0.089 4.089 25 C -0.162 4.162 26 C 0.099 3.901 27 F -0.142 7.142 28 C -0.152 4.152 29 H 0.050 0.950 30 H 0.036 0.964 31 H 0.044 0.956 32 H 0.046 0.954 33 H 0.034 0.966 34 H 0.254 0.746 35 H 0.098 0.902 36 H 0.028 0.972 37 H 0.051 0.949 38 H 0.063 0.937 39 H 0.396 0.604 40 H 0.066 0.934 41 H 0.063 0.937 42 H 0.061 0.939 43 H 0.073 0.927 44 H 0.072 0.928 45 H 0.076 0.924 46 H 0.081 0.919 47 H 0.130 0.870 48 H 0.132 0.868 49 H 0.133 0.867 50 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.863 8.840 20.139 23.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.015 3.985 3 N -0.301 5.301 4 C -0.388 4.388 5 H 0.079 0.921 6 C -0.188 4.188 7 N -0.530 5.530 8 Si 0.725 3.275 9 H -0.200 1.200 10 H -0.214 1.214 11 H -0.216 1.216 12 C 0.010 3.990 13 C -0.028 4.028 14 N -0.370 5.370 15 C 0.294 3.706 16 O -0.427 6.427 17 C -0.133 4.133 18 H 0.113 0.887 19 C -0.204 4.204 20 C -0.131 4.131 21 C -0.122 4.122 22 C -0.047 4.047 23 C -0.146 4.146 24 C -0.107 4.107 25 C -0.181 4.181 26 C 0.080 3.920 27 F -0.120 7.120 28 C -0.171 4.171 29 H 0.069 0.931 30 H 0.055 0.945 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.052 0.948 34 H 0.064 0.936 35 H 0.116 0.884 36 H 0.046 0.954 37 H 0.069 0.931 38 H 0.081 0.919 39 H 0.230 0.770 40 H 0.085 0.915 41 H 0.082 0.918 42 H 0.080 0.920 43 H 0.091 0.909 44 H 0.091 0.909 45 H 0.095 0.905 46 H 0.099 0.901 47 H 0.148 0.852 48 H 0.150 0.850 49 H 0.151 0.849 50 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -7.537 8.906 19.795 22.977 hybrid contribution 0.126 0.593 -0.347 0.699 sum -7.411 9.499 19.447 22.877 Atomic orbital electron populations 1.22387 0.99913 0.99073 1.01402 1.20878 0.91766 0.86992 0.98872 1.43625 1.76042 1.08305 1.02119 1.19059 1.04712 1.21101 0.93949 0.92065 1.25183 0.94178 1.01262 0.98158 1.70004 1.03163 1.37292 1.42540 0.86337 0.77779 0.82162 0.81207 1.19985 1.21398 1.21577 1.21054 0.94608 0.96917 0.86391 1.22436 1.00964 0.96500 0.82923 1.46154 1.13106 1.53213 1.24564 1.20552 0.85353 0.78789 0.85890 1.90681 1.20686 1.61234 1.70054 1.21326 0.97709 0.98688 0.95545 0.88689 1.21845 0.97461 0.98761 1.02377 1.21363 0.96823 1.00546 0.94398 1.20772 0.94570 1.00080 0.96794 1.19775 0.95992 0.93680 0.95234 1.21170 0.98389 0.94315 1.00679 1.21015 0.93525 1.00124 0.96009 1.21137 1.01803 0.92888 1.02296 1.17720 0.89140 0.90529 0.94643 1.91501 1.67171 1.79578 1.73774 1.21074 0.94369 1.01090 1.00521 0.93113 0.94455 0.93681 0.93586 0.94755 0.93597 0.88421 0.95389 0.93119 0.91898 0.77018 0.91471 0.91784 0.91969 0.90860 0.90930 0.90537 0.90074 0.85213 0.85019 0.84947 0.84721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.13 10.21 37.15 0.38 -2.76 16 2 C 0.14 2.95 6.44 -4.04 -0.03 2.92 16 3 N -0.58 -14.02 2.43 -173.24 -0.42 -14.45 16 4 C -0.26 -6.91 9.45 -15.06 -0.14 -7.05 16 5 H 0.06 1.66 7.92 -52.49 -0.42 1.24 16 6 C 0.01 0.33 4.95 -17.43 -0.09 0.25 16 7 N -0.89 -24.50 11.47 55.49 0.64 -23.87 16 8 Si 0.90 21.27 29.61 -169.99 -5.03 16.24 16 9 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 10 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 11 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 12 C 0.14 3.03 5.45 -4.04 -0.02 3.01 16 13 C 0.10 1.96 6.00 -4.04 -0.02 1.93 16 14 N -0.72 -11.69 5.45 -60.29 -0.33 -12.01 16 15 C 0.51 8.12 7.15 -10.98 -0.08 8.04 16 16 O -0.55 -11.09 15.92 5.56 0.09 -11.00 16 17 C -0.11 -1.20 2.73 -91.77 -0.25 -1.45 16 18 H 0.10 0.84 8.14 -51.93 -0.42 0.41 16 19 C -0.15 -1.36 8.84 37.16 0.33 -1.03 16 20 C -0.09 -0.98 4.01 -26.73 -0.11 -1.09 16 21 C -0.08 -0.65 5.10 -27.88 -0.14 -0.79 16 22 C -0.05 -0.41 5.13 -104.64 -0.54 -0.94 16 23 C -0.13 -1.02 9.70 -39.58 -0.38 -1.40 16 24 C -0.09 -0.66 10.04 -39.59 -0.40 -1.06 16 25 C -0.16 -1.36 10.03 -39.52 -0.40 -1.76 16 26 C 0.10 0.98 7.30 -39.42 -0.29 0.69 16 27 F -0.14 -1.53 17.27 2.25 0.04 -1.49 16 28 C -0.15 -1.42 9.68 -39.52 -0.38 -1.80 16 29 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 30 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.04 0.85 6.64 -51.93 -0.34 0.50 16 32 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 33 H 0.03 0.66 7.83 -51.93 -0.41 0.26 16 34 H 0.25 6.75 8.31 -40.82 -0.34 6.41 16 35 H 0.10 2.40 5.52 -51.93 -0.29 2.12 16 36 H 0.03 0.57 7.86 -51.93 -0.41 0.16 16 37 H 0.05 1.05 6.64 -51.93 -0.34 0.71 16 38 H 0.06 1.46 8.14 -51.93 -0.42 1.04 16 39 H 0.40 5.40 7.89 -40.82 -0.32 5.07 16 40 H 0.07 0.46 6.56 -51.93 -0.34 0.12 16 41 H 0.06 0.59 7.56 -51.93 -0.39 0.20 16 42 H 0.06 0.65 8.14 -51.92 -0.42 0.23 16 43 H 0.07 0.89 7.96 -51.93 -0.41 0.48 16 44 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 45 H 0.08 0.51 8.09 -51.93 -0.42 0.09 16 46 H 0.08 0.52 6.51 -51.93 -0.34 0.18 16 47 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 48 H 0.13 0.67 8.06 -52.49 -0.42 0.25 16 49 H 0.13 0.87 8.06 -52.48 -0.42 0.45 16 50 H 0.13 1.12 8.06 -52.48 -0.42 0.69 16 LS Contribution 410.14 15.07 6.18 6.18 Total: -1.00 -31.35 410.14 -9.61 -40.96 By element: Atomic # 1 Polarization: 11.96 SS G_CDS: -8.22 Total: 3.74 kcal Atomic # 6 Polarization: -1.74 SS G_CDS: -2.56 Total: -4.30 kcal Atomic # 7 Polarization: -50.22 SS G_CDS: -0.11 Total: -50.33 kcal Atomic # 8 Polarization: -11.09 SS G_CDS: 0.09 Total: -11.00 kcal Atomic # 9 Polarization: -1.53 SS G_CDS: 0.04 Total: -1.49 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.03 Total: 16.24 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -31.35 -9.61 -40.96 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663457397.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.477 kcal (2) G-P(sol) polarization free energy of solvation -31.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds