Wall clock time and date at job start Tue Mar 31 2020 19:53:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46503 * 109.47146 * 2 1 4 4 C 1.36942 * 120.00171 * 275.31082 * 3 2 1 5 5 H 1.08000 * 119.99653 * 37.57400 * 4 3 2 6 6 C 1.38804 * 120.00075 * 217.57299 * 4 3 2 7 7 N 1.31620 * 120.00095 * 21.43474 * 6 4 3 8 8 Si 1.86802 * 120.00064 * 201.42975 * 6 4 3 9 9 H 1.48494 * 109.47038 * 0.02562 * 8 6 4 10 10 H 1.48497 * 109.46782 * 120.00357 * 8 6 4 11 11 H 1.48501 * 109.47357 * 240.00261 * 8 6 4 12 12 C 1.46497 * 119.99921 * 95.31130 * 3 2 1 13 13 C 1.53010 * 109.47025 * 269.99777 * 12 3 2 14 14 N 1.46497 * 109.47025 * 180.02562 * 13 12 3 15 15 C 1.34777 * 119.99765 * 180.02562 * 14 13 12 16 16 O 1.21278 * 120.00276 * 359.97438 * 15 14 13 17 17 C 1.50703 * 119.99914 * 180.02562 * 15 14 13 18 18 H 1.08998 * 109.47085 * 299.99710 * 17 15 14 19 19 C 1.53000 * 109.47379 * 59.99695 * 17 15 14 20 20 C 1.52997 * 109.46980 * 179.97438 * 17 15 14 21 21 C 1.53005 * 109.47326 * 175.00100 * 20 17 15 22 22 C 1.50694 * 109.47181 * 179.97438 * 21 20 17 23 23 C 1.38265 * 119.98776 * 269.72336 * 22 21 20 24 24 C 1.38225 * 120.05342 * 179.73163 * 23 22 21 25 25 C 1.38214 * 120.02122 * 0.54322 * 24 23 22 26 26 C 1.38433 * 119.97769 * 359.72710 * 25 24 23 27 27 F 1.35100 * 120.02503 * 180.02562 * 26 25 24 28 28 C 1.38171 * 119.98816 * 90.00035 * 22 21 20 29 29 H 1.09000 * 109.47303 * 59.99938 * 1 2 3 30 30 H 1.09005 * 109.46999 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47523 * 300.00047 * 1 2 3 32 32 H 1.09006 * 109.47595 * 240.00066 * 2 1 3 33 33 H 1.09000 * 109.47303 * 120.00062 * 2 1 3 34 34 H 0.97000 * 120.00225 * 179.97438 * 7 6 4 35 35 H 1.08997 * 109.47197 * 150.00426 * 12 3 2 36 36 H 1.09001 * 109.47674 * 29.99707 * 12 3 2 37 37 H 1.09007 * 109.46467 * 60.00204 * 13 12 3 38 38 H 1.08998 * 109.47328 * 300.00289 * 13 12 3 39 39 H 0.97000 * 120.00218 * 0.02562 * 14 13 12 40 40 H 1.08996 * 109.47400 * 180.02562 * 19 17 15 41 41 H 1.09000 * 109.47061 * 300.00317 * 19 17 15 42 42 H 1.09008 * 109.46803 * 60.00038 * 19 17 15 43 43 H 1.09002 * 109.47660 * 54.99677 * 20 17 15 44 44 H 1.09002 * 109.47077 * 294.99709 * 20 17 15 45 45 H 1.09002 * 109.46724 * 299.99826 * 21 20 17 46 46 H 1.09001 * 109.46886 * 59.99739 * 21 20 17 47 47 H 1.08002 * 119.97051 * 359.97438 * 23 22 21 48 48 H 1.08000 * 119.98637 * 180.27287 * 24 23 22 49 49 H 1.08007 * 120.01222 * 179.75388 * 25 24 23 50 50 H 1.08003 * 120.01470 * 359.97438 * 28 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1430 2.0634 -1.1808 5 1 1.4104 1.9279 -1.9627 6 6 3.2110 2.9291 -1.3728 7 7 4.3025 2.7982 -0.6491 8 14 3.0991 4.2797 -2.6584 9 1 1.7770 4.2143 -3.3313 10 1 3.2547 5.6024 -2.0014 11 1 4.1764 4.0966 -3.6639 12 6 2.3732 2.0327 1.2633 13 6 1.1425 2.7383 1.8366 14 7 1.4975 3.3903 3.0995 15 6 0.5649 4.0770 3.7888 16 8 -0.5681 4.1556 3.3633 17 6 0.9302 4.7482 5.0877 18 1 1.2834 3.9994 5.7968 19 6 2.0361 5.7755 4.8377 20 6 -0.3004 5.4536 5.6610 21 6 0.0367 6.0288 7.0382 22 6 -1.1753 6.7242 7.6025 23 6 -1.3793 8.0687 7.3529 24 6 -2.4934 8.7066 7.8652 25 6 -3.3990 8.0035 8.6372 26 6 -3.1928 6.6586 8.8924 27 9 -4.0777 5.9703 9.6464 28 6 -2.0792 6.0193 8.3740 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 5.0490 3.4029 -0.7835 35 1 3.1615 2.7641 1.0859 36 1 2.7254 1.2833 1.9722 37 1 0.3540 2.0068 2.0139 38 1 0.7901 3.4877 1.1277 39 1 2.4037 3.3277 3.4397 40 1 2.3006 6.2606 5.7772 41 1 2.9129 5.2732 4.4290 42 1 1.6828 6.5242 4.1286 43 1 -1.1178 4.7388 5.7560 44 1 -0.6001 6.2614 4.9933 45 1 0.3363 5.2210 7.7058 46 1 0.8540 6.7437 6.9431 47 1 -0.6697 8.6200 6.7538 48 1 -2.6540 9.7558 7.6659 49 1 -4.2674 8.5030 9.0407 50 1 -1.9175 4.9700 8.5722 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663457397.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:53:08 Heat of formation + Delta-G solvation = -80.757102 kcal Electronic energy + Delta-G solvation = -28286.784213 eV Core-core repulsion = 24227.315810 eV Total energy + Delta-G solvation = -4059.468403 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -49.91353 -40.98129 -40.07416 -38.15312 -36.56253 -35.61637 -33.84339 -33.28387 -31.50135 -31.25381 -29.62497 -28.82265 -26.45283 -25.96848 -24.09593 -23.65383 -22.94969 -22.14709 -21.84859 -20.70242 -18.76633 -18.35153 -17.71462 -17.32781 -17.10415 -17.07244 -16.88552 -16.61348 -16.46502 -15.88963 -15.51660 -15.32526 -15.13960 -14.92952 -14.50146 -14.40609 -14.13603 -14.08163 -13.82122 -13.68659 -13.55219 -13.25184 -13.23583 -13.02709 -12.69148 -12.65559 -12.48469 -12.45464 -12.35293 -12.29781 -12.10818 -12.02723 -11.67435 -11.65649 -11.56290 -11.50574 -10.72431 -10.55280 -9.98634 -9.89423 -9.60899 -8.60289 -7.86612 -5.49319 0.19572 0.26545 1.41811 1.46559 1.55917 1.70856 2.26059 2.50397 2.64409 3.20868 3.26511 3.64307 3.67332 3.84382 3.86530 3.99794 4.04025 4.18648 4.30724 4.30986 4.38092 4.41542 4.46157 4.52465 4.54674 4.56746 4.74142 4.78593 4.81377 4.83315 4.96548 5.00156 5.02598 5.05915 5.07013 5.14978 5.19578 5.23511 5.27342 5.35014 5.39780 5.43329 5.48820 5.54943 5.62046 5.66388 5.75047 5.97390 6.44736 6.66713 7.14284 7.34048 7.82145 8.34376 9.09387 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.016379 B = 0.002037 C = 0.001930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1709.119137 B =13739.172804 C =14500.980884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.136 3.864 3 N -0.598 5.598 4 C -0.270 4.270 5 H 0.050 0.950 6 C -0.029 4.029 7 N -0.909 5.909 8 Si 0.950 3.050 9 H -0.275 1.275 10 H -0.287 1.287 11 H -0.286 1.286 12 C 0.146 3.854 13 C 0.119 3.881 14 N -0.714 5.714 15 C 0.503 3.497 16 O -0.596 6.596 17 C -0.099 4.099 18 H 0.126 0.874 19 C -0.145 4.145 20 C -0.088 4.088 21 C -0.075 4.075 22 C -0.058 4.058 23 C -0.131 4.131 24 C -0.090 4.090 25 C -0.168 4.168 26 C 0.072 3.928 27 F -0.153 7.153 28 C -0.164 4.164 29 H 0.033 0.967 30 H 0.069 0.931 31 H 0.039 0.961 32 H 0.037 0.963 33 H 0.052 0.948 34 H 0.254 0.746 35 H 0.075 0.925 36 H 0.045 0.955 37 H 0.044 0.956 38 H 0.025 0.975 39 H 0.412 0.588 40 H 0.101 0.899 41 H 0.065 0.935 42 H 0.046 0.954 43 H 0.050 0.950 44 H 0.054 0.946 45 H 0.091 0.909 46 H 0.102 0.898 47 H 0.149 0.851 48 H 0.158 0.842 49 H 0.147 0.853 50 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.082 9.705 21.556 24.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.011 3.989 3 N -0.320 5.320 4 C -0.400 4.400 5 H 0.068 0.932 6 C -0.227 4.227 7 N -0.553 5.553 8 Si 0.778 3.222 9 H -0.200 1.200 10 H -0.214 1.214 11 H -0.213 1.213 12 C 0.018 3.982 13 C -0.007 4.007 14 N -0.365 5.365 15 C 0.291 3.709 16 O -0.477 6.477 17 C -0.120 4.120 18 H 0.144 0.856 19 C -0.202 4.202 20 C -0.126 4.126 21 C -0.112 4.112 22 C -0.058 4.058 23 C -0.149 4.149 24 C -0.108 4.108 25 C -0.186 4.186 26 C 0.053 3.947 27 F -0.132 7.132 28 C -0.183 4.183 29 H 0.052 0.948 30 H 0.088 0.912 31 H 0.058 0.942 32 H 0.055 0.945 33 H 0.071 0.929 34 H 0.064 0.936 35 H 0.092 0.908 36 H 0.063 0.937 37 H 0.062 0.938 38 H 0.044 0.956 39 H 0.248 0.752 40 H 0.120 0.880 41 H 0.084 0.916 42 H 0.065 0.935 43 H 0.069 0.931 44 H 0.073 0.927 45 H 0.110 0.890 46 H 0.121 0.879 47 H 0.167 0.833 48 H 0.176 0.824 49 H 0.165 0.835 50 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -6.740 9.762 21.238 24.326 hybrid contribution -0.160 0.295 -0.787 0.855 sum -6.899 10.057 20.451 23.811 Atomic orbital electron populations 1.22217 0.98111 1.00824 1.00279 1.21009 0.93077 0.85506 0.99300 1.43868 1.76383 1.09639 1.02068 1.19167 1.04354 1.21751 0.94720 0.93247 1.25749 0.94028 1.02829 1.00058 1.70083 1.03510 1.37910 1.43768 0.85498 0.77547 0.79825 0.79305 1.20024 1.21380 1.21260 1.20928 0.94379 0.96736 0.86107 1.21874 0.99767 0.95207 0.83887 1.46017 1.14190 1.53030 1.23269 1.21572 0.84346 0.77818 0.87133 1.90660 1.22751 1.62731 1.71550 1.21361 0.98436 0.99452 0.92741 0.85628 1.21879 0.96510 0.97960 1.03856 1.21275 0.95982 0.99446 0.95875 1.20727 0.94694 1.00882 0.94882 1.19953 0.96290 0.94202 0.95324 1.21506 0.98832 0.94248 1.00356 1.21364 0.92939 1.01356 0.95133 1.21408 1.02542 0.92429 1.02243 1.18032 0.89612 0.91391 0.95625 1.91464 1.67606 1.79930 1.74222 1.21241 0.94585 1.01502 1.00936 0.94787 0.91217 0.94174 0.94451 0.92945 0.93634 0.90765 0.93694 0.93764 0.95636 0.75209 0.88041 0.91591 0.93482 0.93122 0.92689 0.89018 0.87949 0.83350 0.82435 0.83548 0.84400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.64 10.21 71.98 0.73 -4.91 16 2 C 0.14 5.62 6.44 86.38 0.56 6.17 16 3 N -0.60 -29.08 2.43 -702.00 -1.71 -30.79 16 4 C -0.27 -14.62 9.45 84.03 0.79 -13.83 16 5 H 0.05 2.74 7.92 -2.91 -0.02 2.72 16 6 C -0.03 -1.55 4.95 84.86 0.42 -1.13 16 7 N -0.91 -50.43 11.47 21.65 0.25 -50.18 16 8 Si 0.95 44.10 29.61 68.60 2.03 46.13 16 9 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 10 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 11 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 12 C 0.15 6.41 5.45 86.38 0.47 6.88 16 13 C 0.12 4.88 6.00 86.38 0.52 5.40 16 14 N -0.71 -22.79 5.45 -463.04 -2.52 -25.31 16 15 C 0.50 15.85 7.15 87.66 0.63 16.47 16 16 O -0.60 -24.61 15.92 -3.02 -0.05 -24.66 16 17 C -0.10 -1.93 2.73 -11.54 -0.03 -1.96 16 18 H 0.13 1.76 8.14 -2.39 -0.02 1.74 16 19 C -0.14 -2.26 8.84 71.98 0.64 -1.63 16 20 C -0.09 -1.73 4.01 30.59 0.12 -1.60 16 21 C -0.07 -0.95 5.10 29.85 0.15 -0.80 16 22 C -0.06 -0.91 5.13 -19.88 -0.10 -1.01 16 23 C -0.13 -1.82 9.70 22.27 0.22 -1.60 16 24 C -0.09 -1.17 10.04 22.26 0.22 -0.95 16 25 C -0.17 -2.65 10.03 22.31 0.22 -2.42 16 26 C 0.07 1.42 7.30 22.37 0.16 1.59 16 27 F -0.15 -3.39 17.27 44.97 0.78 -2.61 16 28 C -0.16 -2.99 9.68 22.31 0.22 -2.77 16 29 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.07 2.07 8.14 -2.38 -0.02 2.05 16 31 H 0.04 1.48 6.64 -2.39 -0.02 1.47 16 32 H 0.04 1.58 8.08 -2.38 -0.02 1.56 16 33 H 0.05 1.95 7.83 -2.39 -0.02 1.93 16 34 H 0.25 13.53 8.31 -92.71 -0.77 12.76 16 35 H 0.07 3.68 5.52 -2.39 -0.01 3.67 16 36 H 0.04 1.80 7.86 -2.39 -0.02 1.78 16 37 H 0.04 1.86 6.64 -2.38 -0.02 1.85 16 38 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 39 H 0.41 10.62 7.89 -92.71 -0.73 9.88 16 40 H 0.10 0.93 6.56 -2.39 -0.02 0.92 16 41 H 0.07 1.03 7.56 -2.39 -0.02 1.01 16 42 H 0.05 0.89 8.14 -2.38 -0.02 0.87 16 43 H 0.05 1.22 7.96 -2.39 -0.02 1.21 16 44 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 45 H 0.09 0.92 8.09 -2.39 -0.02 0.90 16 46 H 0.10 0.88 6.51 -2.39 -0.02 0.87 16 47 H 0.15 1.44 8.06 -2.91 -0.02 1.41 16 48 H 0.16 1.15 8.06 -2.91 -0.02 1.13 16 49 H 0.15 1.77 8.06 -2.91 -0.02 1.74 16 50 H 0.14 2.26 8.06 -2.91 -0.02 2.24 16 Total: -1.00 -69.82 410.14 4.91 -64.91 By element: Atomic # 1 Polarization: 20.41 SS G_CDS: 0.20 Total: 20.61 kcal Atomic # 6 Polarization: -4.03 SS G_CDS: 5.94 Total: 1.91 kcal Atomic # 7 Polarization: -102.30 SS G_CDS: -3.98 Total: -106.28 kcal Atomic # 8 Polarization: -24.61 SS G_CDS: -0.05 Total: -24.66 kcal Atomic # 9 Polarization: -3.39 SS G_CDS: 0.78 Total: -2.61 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.13 kcal Total: -69.82 4.91 -64.91 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663457397.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.850 kcal (2) G-P(sol) polarization free energy of solvation -69.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds