Wall clock time and date at job start Tue Mar 31 2020 19:53:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46498 * 109.47327 * 2 1 4 4 C 1.36942 * 119.99719 * 275.30925 * 3 2 1 5 5 H 1.07999 * 120.00096 * 37.58081 * 4 3 2 6 6 C 1.38813 * 119.99469 * 217.57763 * 4 3 2 7 7 N 1.31613 * 120.00447 * 21.42349 * 6 4 3 8 8 Si 1.86800 * 119.99650 * 201.42171 * 6 4 3 9 9 H 1.48506 * 109.47248 * 60.00202 * 8 6 4 10 10 H 1.48500 * 109.47145 * 180.02562 * 8 6 4 11 11 H 1.48498 * 109.47410 * 300.00433 * 8 6 4 12 12 C 1.46495 * 120.00057 * 95.30823 * 3 2 1 13 13 C 1.53007 * 109.47104 * 269.99797 * 12 3 2 14 14 N 1.46495 * 109.47104 * 180.02562 * 13 12 3 15 15 C 1.34783 * 120.00066 * 180.27705 * 14 13 12 16 16 O 1.21275 * 119.99486 * 359.72528 * 15 14 13 17 17 C 1.50697 * 120.00051 * 179.72297 * 15 14 13 18 18 H 1.09005 * 109.47118 * 60.00267 * 17 15 14 19 19 C 1.52998 * 109.47515 * 300.00443 * 17 15 14 20 20 C 1.52999 * 109.47141 * 180.02562 * 17 15 14 21 21 C 1.53002 * 109.47039 * 185.00137 * 20 17 15 22 22 C 1.50702 * 109.46941 * 180.02562 * 21 20 17 23 23 C 1.38269 * 119.98844 * 269.73171 * 22 21 20 24 24 C 1.38224 * 120.05113 * 179.72795 * 23 22 21 25 25 C 1.38215 * 120.02106 * 0.54146 * 24 23 22 26 26 C 1.38435 * 119.97976 * 359.72538 * 25 24 23 27 27 F 1.35100 * 120.02745 * 180.02562 * 26 25 24 28 28 C 1.38170 * 119.98646 * 90.00074 * 22 21 20 29 29 H 1.09007 * 109.46986 * 60.00197 * 1 2 3 30 30 H 1.09000 * 109.47367 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47156 * 300.00246 * 1 2 3 32 32 H 1.09001 * 109.47156 * 239.99754 * 2 1 3 33 33 H 1.09003 * 109.47275 * 120.00194 * 2 1 3 34 34 H 0.96993 * 120.00251 * 179.97438 * 7 6 4 35 35 H 1.08999 * 109.47009 * 150.00205 * 12 3 2 36 36 H 1.09003 * 109.47459 * 29.99888 * 12 3 2 37 37 H 1.08999 * 109.46854 * 60.00313 * 13 12 3 38 38 H 1.08995 * 109.47034 * 300.00656 * 13 12 3 39 39 H 0.97005 * 120.00084 * 0.02562 * 14 13 12 40 40 H 1.08995 * 109.47216 * 59.99639 * 19 17 15 41 41 H 1.08997 * 109.47638 * 180.02562 * 19 17 15 42 42 H 1.09005 * 109.46784 * 300.00028 * 19 17 15 43 43 H 1.09000 * 109.46797 * 305.00613 * 20 17 15 44 44 H 1.08994 * 109.46796 * 65.00323 * 20 17 15 45 45 H 1.08992 * 109.47112 * 299.99859 * 21 20 17 46 46 H 1.08997 * 109.46692 * 60.00249 * 21 20 17 47 47 H 1.08000 * 119.97181 * 359.97213 * 23 22 21 48 48 H 1.07997 * 119.98505 * 180.27096 * 24 23 22 49 49 H 1.08002 * 120.00582 * 179.74999 * 25 24 23 50 50 H 1.08003 * 120.01767 * 359.97438 * 28 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1432 2.0633 -1.1809 5 1 1.4106 1.9278 -1.9628 6 6 3.2113 2.9288 -1.3728 7 7 4.3027 2.7980 -0.6490 8 14 3.0996 4.2793 -2.6586 9 1 1.9629 5.1784 -2.3347 10 1 4.3625 5.0605 -2.6670 11 1 2.8846 3.6723 -3.9967 12 6 2.3732 2.0326 1.2632 13 6 1.1426 2.7383 1.8365 14 7 1.4976 3.3903 3.0994 15 6 0.5637 4.0729 3.7912 16 8 -0.5692 4.1515 3.3657 17 6 0.9274 4.7383 5.0935 18 1 1.7145 5.4719 4.9193 19 6 1.4237 3.6833 6.0842 20 6 -0.3048 5.4387 5.6698 21 6 0.0921 6.2176 6.9256 22 6 -1.1216 6.9070 7.4936 23 6 -1.4419 8.1890 7.0867 24 6 -2.5581 8.8205 7.6027 25 6 -3.3489 8.1749 8.5344 26 6 -3.0262 6.8934 8.9466 27 9 -3.7989 6.2613 9.8569 28 6 -1.9109 6.2597 8.4249 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8934 -0.5139 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 5.0492 3.4026 -0.7834 35 1 3.1617 2.7640 1.0859 36 1 2.7255 1.2833 1.9722 37 1 0.3541 2.0069 2.0138 38 1 0.7903 3.4876 1.1276 39 1 2.4038 3.3277 3.4396 40 1 2.3014 3.1840 5.6739 41 1 1.6863 4.1645 7.0263 42 1 0.6365 2.9497 6.2584 43 1 -0.7113 6.1269 4.9287 44 1 -1.0586 4.6947 5.9269 45 1 0.4986 5.5294 7.6666 46 1 0.8460 6.9616 6.6684 47 1 -0.8217 8.6960 6.3623 48 1 -2.8097 9.8202 7.2808 49 1 -4.2187 8.6701 8.9404 50 1 -1.6583 5.2598 8.7456 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663457398.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:53:13 Heat of formation + Delta-G solvation = -64.353342 kcal Electronic energy + Delta-G solvation = -28273.400259 eV Core-core repulsion = 24214.643176 eV Total energy + Delta-G solvation = -4058.757082 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -49.16069 -39.85306 -39.27215 -36.43421 -35.61828 -34.08325 -32.51898 -31.89924 -30.85723 -29.68258 -28.56034 -27.38524 -25.48199 -24.29902 -23.12366 -22.81085 -21.66179 -20.95596 -20.35156 -19.49679 -17.71098 -16.91290 -16.70523 -16.48309 -16.34474 -15.87226 -15.59837 -15.38505 -14.99259 -14.61316 -14.24191 -13.99144 -13.91437 -13.67597 -13.61736 -13.44623 -13.02980 -12.84650 -12.71051 -12.40294 -12.38186 -12.10496 -12.03694 -11.74812 -11.64440 -11.49847 -11.40719 -11.12884 -10.95246 -10.78451 -10.76529 -10.63691 -10.54148 -10.09416 -9.88623 -9.82582 -9.39937 -9.23776 -8.94694 -8.57062 -8.43394 -6.63740 -5.85240 -3.43807 0.84832 0.89131 2.99235 3.24457 3.34491 3.39935 3.44241 3.60090 3.92526 4.31859 4.42771 4.44925 4.67092 4.77945 4.81377 4.84045 4.92231 5.02472 5.13462 5.26477 5.26916 5.34656 5.43824 5.53838 5.59190 5.67287 5.70167 5.77549 5.80726 5.83655 5.98162 5.99125 6.08071 6.12598 6.16608 6.22301 6.26137 6.37726 6.42407 6.50557 6.59107 6.68124 6.89863 6.91467 7.02740 7.15770 7.52985 7.78546 7.96117 8.46512 8.62575 9.13216 9.75093 10.33222 11.14883 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.016259 B = 0.002022 C = 0.001930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1721.724505 B =13841.607162 C =14500.975531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.141 3.859 3 N -0.580 5.580 4 C -0.260 4.260 5 H 0.061 0.939 6 C 0.013 3.987 7 N -0.888 5.888 8 Si 0.897 3.103 9 H -0.282 1.282 10 H -0.290 1.290 11 H -0.280 1.280 12 C 0.138 3.862 13 C 0.097 3.903 14 N -0.720 5.720 15 C 0.509 3.491 16 O -0.549 6.549 17 C -0.112 4.112 18 H 0.096 0.904 19 C -0.146 4.146 20 C -0.093 4.093 21 C -0.085 4.085 22 C -0.047 4.047 23 C -0.127 4.127 24 C -0.088 4.088 25 C -0.162 4.162 26 C 0.098 3.902 27 F -0.142 7.142 28 C -0.152 4.152 29 H 0.050 0.950 30 H 0.036 0.964 31 H 0.044 0.956 32 H 0.046 0.954 33 H 0.034 0.966 34 H 0.255 0.745 35 H 0.098 0.902 36 H 0.028 0.972 37 H 0.050 0.950 38 H 0.063 0.937 39 H 0.396 0.604 40 H 0.062 0.938 41 H 0.066 0.934 42 H 0.060 0.940 43 H 0.074 0.926 44 H 0.071 0.929 45 H 0.079 0.921 46 H 0.078 0.922 47 H 0.130 0.870 48 H 0.132 0.868 49 H 0.133 0.867 50 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.048 8.422 20.168 22.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.015 3.985 3 N -0.300 5.300 4 C -0.390 4.390 5 H 0.079 0.921 6 C -0.187 4.187 7 N -0.530 5.530 8 Si 0.726 3.274 9 H -0.208 1.208 10 H -0.216 1.216 11 H -0.206 1.206 12 C 0.010 3.990 13 C -0.028 4.028 14 N -0.370 5.370 15 C 0.294 3.706 16 O -0.427 6.427 17 C -0.134 4.134 18 H 0.115 0.885 19 C -0.203 4.203 20 C -0.131 4.131 21 C -0.122 4.122 22 C -0.047 4.047 23 C -0.145 4.145 24 C -0.107 4.107 25 C -0.181 4.181 26 C 0.079 3.921 27 F -0.120 7.120 28 C -0.171 4.171 29 H 0.069 0.931 30 H 0.055 0.945 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.052 0.948 34 H 0.065 0.935 35 H 0.116 0.884 36 H 0.046 0.954 37 H 0.069 0.931 38 H 0.081 0.919 39 H 0.230 0.770 40 H 0.081 0.919 41 H 0.085 0.915 42 H 0.079 0.921 43 H 0.093 0.907 44 H 0.089 0.911 45 H 0.097 0.903 46 H 0.097 0.903 47 H 0.148 0.852 48 H 0.150 0.850 49 H 0.151 0.849 50 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -7.702 8.491 19.833 22.908 hybrid contribution 0.137 0.642 -0.353 0.745 sum -7.565 9.133 19.480 22.806 Atomic orbital electron populations 1.22391 0.99926 0.99068 1.01395 1.20876 0.91756 0.86994 0.98867 1.43605 1.76058 1.08283 1.02099 1.18978 1.04740 1.21307 0.93988 0.92150 1.25181 0.94153 1.01223 0.98160 1.69980 1.03127 1.37363 1.42542 0.86463 0.76948 0.82319 0.81644 1.20787 1.21585 1.20608 1.21053 0.94602 0.96905 0.86393 1.22437 1.00970 0.96504 0.82917 1.46156 1.13039 1.53413 1.24427 1.20542 0.85395 0.78935 0.85689 1.90680 1.20695 1.61032 1.70245 1.21332 0.99803 0.98661 0.93568 0.88549 1.21836 1.01596 0.98234 0.98676 1.21359 0.96598 0.99355 0.95804 1.20771 0.94356 0.99315 0.97780 1.19777 0.96332 0.93956 0.94623 1.21185 0.97885 0.94851 1.00608 1.21020 0.94146 0.99995 0.95493 1.21137 1.02154 0.94123 1.00705 1.17716 0.91345 0.91966 0.91042 1.91500 1.73976 1.82044 1.64519 1.21058 0.95172 1.01246 0.99579 0.93112 0.94459 0.93692 0.93588 0.94762 0.93478 0.88439 0.95393 0.93128 0.91891 0.77021 0.91874 0.91460 0.92092 0.90733 0.91056 0.90278 0.90323 0.85191 0.85007 0.84947 0.84740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.13 10.21 37.16 0.38 -2.75 16 2 C 0.14 2.95 6.44 -4.04 -0.03 2.93 16 3 N -0.58 -14.02 2.43 -173.24 -0.42 -14.44 16 4 C -0.26 -6.97 9.45 -15.06 -0.14 -7.11 16 5 H 0.06 1.63 7.92 -52.49 -0.42 1.22 16 6 C 0.01 0.35 4.95 -17.43 -0.09 0.27 16 7 N -0.89 -24.53 11.47 55.49 0.64 -23.89 16 8 Si 0.90 21.28 29.60 -169.99 -5.03 16.25 16 9 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 10 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 11 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 12 C 0.14 3.03 5.45 -4.04 -0.02 3.01 16 13 C 0.10 1.96 6.00 -4.04 -0.02 1.94 16 14 N -0.72 -11.69 5.45 -60.30 -0.33 -12.01 16 15 C 0.51 8.12 7.15 -10.98 -0.08 8.05 16 16 O -0.55 -11.09 15.92 5.56 0.09 -11.00 16 17 C -0.11 -1.21 2.73 -91.77 -0.25 -1.46 16 18 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 19 C -0.15 -1.26 8.84 37.16 0.33 -0.94 16 20 C -0.09 -0.98 4.01 -26.73 -0.11 -1.09 16 21 C -0.09 -0.66 5.10 -27.88 -0.14 -0.80 16 22 C -0.05 -0.41 5.13 -104.63 -0.54 -0.94 16 23 C -0.13 -1.03 9.70 -39.58 -0.38 -1.42 16 24 C -0.09 -0.67 10.04 -39.59 -0.40 -1.07 16 25 C -0.16 -1.36 10.03 -39.52 -0.40 -1.76 16 26 C 0.10 0.97 7.30 -39.42 -0.29 0.68 16 27 F -0.14 -1.51 17.27 2.25 0.04 -1.48 16 28 C -0.15 -1.40 9.68 -39.52 -0.38 -1.79 16 29 H 0.05 0.99 8.14 -51.92 -0.42 0.57 16 30 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.04 0.85 6.64 -51.93 -0.34 0.50 16 32 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 33 H 0.03 0.66 7.83 -51.93 -0.41 0.26 16 34 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 35 H 0.10 2.40 5.52 -51.93 -0.29 2.11 16 36 H 0.03 0.57 7.86 -51.93 -0.41 0.16 16 37 H 0.05 1.05 6.64 -51.93 -0.34 0.71 16 38 H 0.06 1.47 8.14 -51.93 -0.42 1.04 16 39 H 0.40 5.39 7.89 -40.82 -0.32 5.07 16 40 H 0.06 0.52 7.56 -51.93 -0.39 0.13 16 41 H 0.07 0.44 6.56 -51.93 -0.34 0.10 16 42 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 43 H 0.07 0.91 7.95 -51.93 -0.41 0.49 16 44 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 45 H 0.08 0.52 6.51 -51.93 -0.34 0.18 16 46 H 0.08 0.52 8.08 -51.93 -0.42 0.10 16 47 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 48 H 0.13 0.69 8.06 -52.49 -0.42 0.27 16 49 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 50 H 0.13 1.08 8.06 -52.48 -0.42 0.66 16 LS Contribution 410.13 15.07 6.18 6.18 Total: -1.00 -31.32 410.13 -9.61 -40.93 By element: Atomic # 1 Polarization: 11.95 SS G_CDS: -8.22 Total: 3.73 kcal Atomic # 6 Polarization: -1.70 SS G_CDS: -2.56 Total: -4.26 kcal Atomic # 7 Polarization: -50.23 SS G_CDS: -0.11 Total: -50.35 kcal Atomic # 8 Polarization: -11.09 SS G_CDS: 0.09 Total: -11.00 kcal Atomic # 9 Polarization: -1.51 SS G_CDS: 0.04 Total: -1.48 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.03 Total: 16.25 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -31.32 -9.61 -40.93 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663457398.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.428 kcal (2) G-P(sol) polarization free energy of solvation -31.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds