Wall clock time and date at job start Tue Mar 31 2020 19:53:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46498 * 109.47327 * 2 1 4 4 C 1.36942 * 119.99719 * 275.30925 * 3 2 1 5 5 H 1.07999 * 120.00096 * 37.58081 * 4 3 2 6 6 C 1.38813 * 119.99469 * 217.57763 * 4 3 2 7 7 N 1.31613 * 120.00447 * 21.42349 * 6 4 3 8 8 Si 1.86800 * 119.99650 * 201.42171 * 6 4 3 9 9 H 1.48506 * 109.47248 * 60.00202 * 8 6 4 10 10 H 1.48500 * 109.47145 * 180.02562 * 8 6 4 11 11 H 1.48498 * 109.47410 * 300.00433 * 8 6 4 12 12 C 1.46495 * 120.00057 * 95.30823 * 3 2 1 13 13 C 1.53007 * 109.47104 * 269.99797 * 12 3 2 14 14 N 1.46495 * 109.47104 * 180.02562 * 13 12 3 15 15 C 1.34783 * 120.00066 * 180.27705 * 14 13 12 16 16 O 1.21275 * 119.99486 * 359.72528 * 15 14 13 17 17 C 1.50697 * 120.00051 * 179.72297 * 15 14 13 18 18 H 1.09005 * 109.47118 * 60.00267 * 17 15 14 19 19 C 1.52998 * 109.47515 * 300.00443 * 17 15 14 20 20 C 1.52999 * 109.47141 * 180.02562 * 17 15 14 21 21 C 1.53002 * 109.47039 * 185.00137 * 20 17 15 22 22 C 1.50702 * 109.46941 * 180.02562 * 21 20 17 23 23 C 1.38269 * 119.98844 * 269.73171 * 22 21 20 24 24 C 1.38224 * 120.05113 * 179.72795 * 23 22 21 25 25 C 1.38215 * 120.02106 * 0.54146 * 24 23 22 26 26 C 1.38435 * 119.97976 * 359.72538 * 25 24 23 27 27 F 1.35100 * 120.02745 * 180.02562 * 26 25 24 28 28 C 1.38170 * 119.98646 * 90.00074 * 22 21 20 29 29 H 1.09007 * 109.46986 * 60.00197 * 1 2 3 30 30 H 1.09000 * 109.47367 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47156 * 300.00246 * 1 2 3 32 32 H 1.09001 * 109.47156 * 239.99754 * 2 1 3 33 33 H 1.09003 * 109.47275 * 120.00194 * 2 1 3 34 34 H 0.96993 * 120.00251 * 179.97438 * 7 6 4 35 35 H 1.08999 * 109.47009 * 150.00205 * 12 3 2 36 36 H 1.09003 * 109.47459 * 29.99888 * 12 3 2 37 37 H 1.08999 * 109.46854 * 60.00313 * 13 12 3 38 38 H 1.08995 * 109.47034 * 300.00656 * 13 12 3 39 39 H 0.97005 * 120.00084 * 0.02562 * 14 13 12 40 40 H 1.08995 * 109.47216 * 59.99639 * 19 17 15 41 41 H 1.08997 * 109.47638 * 180.02562 * 19 17 15 42 42 H 1.09005 * 109.46784 * 300.00028 * 19 17 15 43 43 H 1.09000 * 109.46797 * 305.00613 * 20 17 15 44 44 H 1.08994 * 109.46796 * 65.00323 * 20 17 15 45 45 H 1.08992 * 109.47112 * 299.99859 * 21 20 17 46 46 H 1.08997 * 109.46692 * 60.00249 * 21 20 17 47 47 H 1.08000 * 119.97181 * 359.97213 * 23 22 21 48 48 H 1.07997 * 119.98505 * 180.27096 * 24 23 22 49 49 H 1.08002 * 120.00582 * 179.74999 * 25 24 23 50 50 H 1.08003 * 120.01767 * 359.97438 * 28 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1432 2.0633 -1.1809 5 1 1.4106 1.9278 -1.9628 6 6 3.2113 2.9288 -1.3728 7 7 4.3027 2.7980 -0.6490 8 14 3.0996 4.2793 -2.6586 9 1 1.9629 5.1784 -2.3347 10 1 4.3625 5.0605 -2.6670 11 1 2.8846 3.6723 -3.9967 12 6 2.3732 2.0326 1.2632 13 6 1.1426 2.7383 1.8365 14 7 1.4976 3.3903 3.0994 15 6 0.5637 4.0729 3.7912 16 8 -0.5692 4.1515 3.3657 17 6 0.9274 4.7383 5.0935 18 1 1.7145 5.4719 4.9193 19 6 1.4237 3.6833 6.0842 20 6 -0.3048 5.4387 5.6698 21 6 0.0921 6.2176 6.9256 22 6 -1.1216 6.9070 7.4936 23 6 -1.4419 8.1890 7.0867 24 6 -2.5581 8.8205 7.6027 25 6 -3.3489 8.1749 8.5344 26 6 -3.0262 6.8934 8.9466 27 9 -3.7989 6.2613 9.8569 28 6 -1.9109 6.2597 8.4249 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8934 -0.5139 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 5.0492 3.4026 -0.7834 35 1 3.1617 2.7640 1.0859 36 1 2.7255 1.2833 1.9722 37 1 0.3541 2.0069 2.0138 38 1 0.7903 3.4876 1.1276 39 1 2.4038 3.3277 3.4396 40 1 2.3014 3.1840 5.6739 41 1 1.6863 4.1645 7.0263 42 1 0.6365 2.9497 6.2584 43 1 -0.7113 6.1269 4.9287 44 1 -1.0586 4.6947 5.9269 45 1 0.4986 5.5294 7.6666 46 1 0.8460 6.9616 6.6684 47 1 -0.8217 8.6960 6.3623 48 1 -2.8097 9.8202 7.2808 49 1 -4.2187 8.6701 8.9404 50 1 -1.6583 5.2598 8.7456 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663457398.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:53:12 Heat of formation + Delta-G solvation = -80.603095 kcal Electronic energy + Delta-G solvation = -28274.104901 eV Core-core repulsion = 24214.643176 eV Total energy + Delta-G solvation = -4059.461725 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -49.91159 -40.98150 -40.07642 -38.15022 -36.56376 -35.61507 -33.84123 -33.27902 -31.50859 -31.25703 -29.62131 -28.81841 -26.44589 -25.96590 -24.11171 -23.65163 -22.93711 -22.14358 -21.85267 -20.70627 -18.75203 -18.36288 -17.68877 -17.38540 -17.09555 -17.05195 -16.83489 -16.60588 -16.52146 -15.89456 -15.56900 -15.34879 -15.04757 -14.77750 -14.63470 -14.43783 -14.14822 -14.06000 -13.85483 -13.64878 -13.53451 -13.29523 -13.20018 -13.01412 -12.71302 -12.62502 -12.50572 -12.39438 -12.37993 -12.30343 -12.12811 -12.02692 -11.69674 -11.67798 -11.53768 -11.49445 -10.72606 -10.54389 -9.98547 -9.89428 -9.61241 -8.59747 -7.86280 -5.48955 0.19234 0.26386 1.44310 1.47387 1.53779 1.71271 2.25895 2.50819 2.64111 3.21290 3.26381 3.63993 3.67492 3.82642 3.87454 4.01597 4.03814 4.18769 4.30481 4.31176 4.37761 4.40937 4.46182 4.47662 4.54454 4.62480 4.74910 4.77458 4.81710 4.83403 4.96000 4.99322 5.03245 5.06935 5.08314 5.13877 5.18174 5.23178 5.27390 5.34348 5.39897 5.44011 5.48701 5.54951 5.61665 5.66312 5.75114 5.97044 6.44856 6.66855 7.14601 7.34193 7.82522 8.34794 9.09637 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.016259 B = 0.002022 C = 0.001930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1721.724505 B =13841.607162 C =14500.975531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.137 3.863 3 N -0.598 5.598 4 C -0.272 4.272 5 H 0.050 0.950 6 C -0.028 4.028 7 N -0.909 5.909 8 Si 0.951 3.049 9 H -0.286 1.286 10 H -0.286 1.286 11 H -0.276 1.276 12 C 0.146 3.854 13 C 0.120 3.880 14 N -0.713 5.713 15 C 0.504 3.496 16 O -0.596 6.596 17 C -0.101 4.101 18 H 0.122 0.878 19 C -0.143 4.143 20 C -0.088 4.088 21 C -0.075 4.075 22 C -0.058 4.058 23 C -0.133 4.133 24 C -0.091 4.091 25 C -0.168 4.168 26 C 0.073 3.927 27 F -0.153 7.153 28 C -0.162 4.162 29 H 0.033 0.967 30 H 0.069 0.931 31 H 0.039 0.961 32 H 0.037 0.963 33 H 0.052 0.948 34 H 0.255 0.745 35 H 0.074 0.926 36 H 0.045 0.955 37 H 0.044 0.956 38 H 0.025 0.975 39 H 0.412 0.588 40 H 0.069 0.931 41 H 0.097 0.903 42 H 0.049 0.951 43 H 0.052 0.948 44 H 0.052 0.948 45 H 0.096 0.904 46 H 0.097 0.903 47 H 0.146 0.854 48 H 0.157 0.843 49 H 0.147 0.853 50 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.325 9.159 21.451 24.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.011 3.989 3 N -0.319 5.319 4 C -0.402 4.402 5 H 0.068 0.932 6 C -0.226 4.226 7 N -0.552 5.552 8 Si 0.779 3.221 9 H -0.213 1.213 10 H -0.212 1.212 11 H -0.201 1.201 12 C 0.019 3.981 13 C -0.007 4.007 14 N -0.365 5.365 15 C 0.292 3.708 16 O -0.477 6.477 17 C -0.122 4.122 18 H 0.140 0.860 19 C -0.200 4.200 20 C -0.126 4.126 21 C -0.112 4.112 22 C -0.058 4.058 23 C -0.151 4.151 24 C -0.108 4.108 25 C -0.186 4.186 26 C 0.054 3.946 27 F -0.131 7.131 28 C -0.181 4.181 29 H 0.053 0.947 30 H 0.088 0.912 31 H 0.058 0.942 32 H 0.055 0.945 33 H 0.070 0.930 34 H 0.064 0.936 35 H 0.092 0.908 36 H 0.063 0.937 37 H 0.062 0.938 38 H 0.043 0.957 39 H 0.248 0.752 40 H 0.088 0.912 41 H 0.116 0.884 42 H 0.069 0.931 43 H 0.071 0.929 44 H 0.071 0.929 45 H 0.114 0.886 46 H 0.116 0.884 47 H 0.164 0.836 48 H 0.175 0.825 49 H 0.165 0.835 50 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -6.962 9.215 21.141 24.090 hybrid contribution -0.138 0.384 -0.752 0.855 sum -7.101 9.599 20.389 23.628 Atomic orbital electron populations 1.22220 0.98120 1.00819 1.00278 1.21006 0.93071 0.85509 0.99287 1.43852 1.76398 1.09619 1.02057 1.19112 1.04406 1.21937 0.94777 0.93224 1.25756 0.93998 1.02803 1.00083 1.70066 1.03454 1.37945 1.43781 0.85609 0.76589 0.79963 0.79890 1.21304 1.21213 1.20118 1.20927 0.94364 0.96732 0.86115 1.21870 0.99774 0.95193 0.83876 1.46016 1.14123 1.53239 1.23119 1.21558 0.84393 0.77970 0.86901 1.90659 1.22761 1.62583 1.71694 1.21368 1.00596 0.99354 0.90849 0.85994 1.21867 1.01352 0.97524 0.99301 1.21272 0.95996 0.98696 0.96605 1.20725 0.94328 0.99671 0.96479 1.19949 0.96738 0.94399 0.94680 1.21505 0.98196 0.94824 1.00599 1.21352 0.93655 1.01004 0.94825 1.21404 1.02753 0.93721 1.00739 1.18019 0.91970 0.92854 0.91735 1.91465 1.74322 1.82348 1.65013 1.21231 0.95241 1.01681 0.99909 0.94749 0.91224 0.94209 0.94457 0.92962 0.93610 0.90771 0.93685 0.93807 0.95670 0.75198 0.91183 0.88424 0.93145 0.92892 0.92904 0.88573 0.88450 0.83613 0.82542 0.83535 0.84155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.64 10.21 71.98 0.73 -4.90 16 2 C 0.14 5.62 6.44 86.38 0.56 6.18 16 3 N -0.60 -29.06 2.43 -701.99 -1.71 -30.77 16 4 C -0.27 -14.74 9.45 84.03 0.79 -13.95 16 5 H 0.05 2.74 7.92 -2.91 -0.02 2.72 16 6 C -0.03 -1.53 4.95 84.86 0.42 -1.11 16 7 N -0.91 -50.42 11.47 21.65 0.25 -50.17 16 8 Si 0.95 44.06 29.60 68.60 2.03 46.09 16 9 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 10 H -0.29 -13.01 7.11 99.48 0.71 -12.30 16 11 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 12 C 0.15 6.41 5.45 86.38 0.47 6.88 16 13 C 0.12 4.89 6.00 86.38 0.52 5.41 16 14 N -0.71 -22.78 5.45 -463.07 -2.52 -25.30 16 15 C 0.50 15.86 7.15 87.66 0.63 16.49 16 16 O -0.60 -24.62 15.92 -3.02 -0.05 -24.67 16 17 C -0.10 -1.97 2.73 -11.54 -0.03 -2.00 16 18 H 0.12 1.84 8.14 -2.38 -0.02 1.82 16 19 C -0.14 -2.06 8.84 71.98 0.64 -1.43 16 20 C -0.09 -1.73 4.01 30.59 0.12 -1.61 16 21 C -0.08 -0.97 5.10 29.85 0.15 -0.81 16 22 C -0.06 -0.92 5.13 -19.87 -0.10 -1.02 16 23 C -0.13 -1.92 9.70 22.27 0.22 -1.71 16 24 C -0.09 -1.22 10.04 22.26 0.22 -0.99 16 25 C -0.17 -2.66 10.03 22.31 0.22 -2.43 16 26 C 0.07 1.42 7.30 22.37 0.16 1.58 16 27 F -0.15 -3.30 17.27 44.97 0.78 -2.53 16 28 C -0.16 -2.89 9.68 22.31 0.22 -2.67 16 29 H 0.03 1.33 8.14 -2.38 -0.02 1.31 16 30 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 31 H 0.04 1.47 6.64 -2.39 -0.02 1.45 16 32 H 0.04 1.58 8.08 -2.39 -0.02 1.56 16 33 H 0.05 1.94 7.83 -2.39 -0.02 1.93 16 34 H 0.25 13.62 8.31 -92.71 -0.77 12.84 16 35 H 0.07 3.68 5.52 -2.39 -0.01 3.67 16 36 H 0.04 1.80 7.86 -2.39 -0.02 1.78 16 37 H 0.04 1.85 6.64 -2.39 -0.02 1.83 16 38 H 0.02 1.21 8.14 -2.39 -0.02 1.19 16 39 H 0.41 10.59 7.89 -92.70 -0.73 9.86 16 40 H 0.07 0.94 7.56 -2.39 -0.02 0.92 16 41 H 0.10 0.86 6.56 -2.39 -0.02 0.85 16 42 H 0.05 0.85 8.14 -2.38 -0.02 0.83 16 43 H 0.05 1.27 7.95 -2.39 -0.02 1.25 16 44 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 45 H 0.10 0.92 6.51 -2.39 -0.02 0.91 16 46 H 0.10 0.92 8.08 -2.39 -0.02 0.90 16 47 H 0.15 1.58 8.06 -2.91 -0.02 1.55 16 48 H 0.16 1.24 8.06 -2.91 -0.02 1.22 16 49 H 0.15 1.78 8.06 -2.91 -0.02 1.75 16 50 H 0.14 2.18 8.06 -2.91 -0.02 2.16 16 Total: -1.00 -69.51 410.13 4.91 -64.60 By element: Atomic # 1 Polarization: 20.64 SS G_CDS: 0.20 Total: 20.84 kcal Atomic # 6 Polarization: -4.03 SS G_CDS: 5.94 Total: 1.92 kcal Atomic # 7 Polarization: -102.26 SS G_CDS: -3.98 Total: -106.24 kcal Atomic # 8 Polarization: -24.62 SS G_CDS: -0.05 Total: -24.67 kcal Atomic # 9 Polarization: -3.30 SS G_CDS: 0.78 Total: -2.53 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.09 kcal Total: -69.51 4.91 -64.60 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663457398.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.008 kcal (2) G-P(sol) polarization free energy of solvation -69.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds