Wall clock time and date at job start Tue Mar 31 2020 19:35:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 119.99954 * 2 1 4 4 H 1.48500 * 109.47035 * 269.99909 * 3 2 1 5 5 H 1.48498 * 109.47298 * 29.99380 * 3 2 1 6 6 H 1.48499 * 109.47475 * 150.00144 * 3 2 1 7 7 C 1.37877 * 119.99932 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99814 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00211 * 359.97438 * 7 2 1 10 10 N 1.46901 * 109.47345 * 179.97438 * 9 7 2 11 11 C 1.46899 * 111.00289 * 193.95604 * 10 9 7 12 12 C 1.52995 * 109.46789 * 66.04673 * 11 10 9 13 13 N 1.46906 * 109.46751 * 180.02562 * 12 11 10 14 14 C 1.47019 * 110.99647 * 293.63110 * 13 12 11 15 15 C 1.53107 * 109.25489 * 177.60774 * 14 13 12 16 16 O 1.43013 * 109.25543 * 56.85169 * 15 14 13 17 17 C 1.43010 * 113.74232 * 301.32854 * 16 15 14 18 18 C 1.47013 * 110.99952 * 170.00207 * 13 12 11 19 19 C 1.46907 * 110.99625 * 70.00351 * 10 9 7 20 20 C 1.50703 * 109.46919 * 293.95119 * 19 10 9 21 21 N 1.31074 * 126.65657 * 89.97890 * 20 19 10 22 22 N 1.28837 * 107.99117 * 180.02562 * 21 20 19 23 23 N 1.28737 * 109.39741 * 359.97438 * 22 21 20 24 24 N 1.29021 * 108.81034 * 0.02562 * 23 22 21 25 25 C 1.46496 * 126.43980 * 179.97438 * 24 23 22 26 26 C 1.53001 * 117.50042 * 8.66398 * 25 24 23 27 27 C 1.53005 * 117.50033 * 300.03955 * 25 24 23 28 28 H 0.96997 * 120.00332 * 359.97438 * 1 2 3 29 29 H 1.08994 * 109.46899 * 60.00144 * 9 7 2 30 30 H 1.08999 * 109.47621 * 300.00167 * 9 7 2 31 31 H 1.08997 * 109.47053 * 186.04912 * 11 10 9 32 32 H 1.09001 * 109.46696 * 306.04849 * 11 10 9 33 33 H 1.08997 * 109.47518 * 299.99954 * 12 11 10 34 34 H 1.09001 * 109.47358 * 60.00581 * 12 11 10 35 35 H 1.08994 * 109.51141 * 297.54172 * 14 13 12 36 36 H 1.08997 * 109.50643 * 57.67934 * 14 13 12 37 37 H 1.09004 * 109.50489 * 296.91726 * 15 14 13 38 38 H 1.09001 * 109.53934 * 176.80797 * 15 14 13 39 39 H 1.09003 * 109.50693 * 298.73815 * 17 16 15 40 40 H 1.08994 * 109.54220 * 178.62974 * 17 16 15 41 41 H 1.08996 * 109.50963 * 302.32484 * 18 13 12 42 42 H 1.09001 * 109.51098 * 62.41339 * 18 13 12 43 43 H 1.08995 * 109.46851 * 173.96026 * 19 10 9 44 44 H 1.08996 * 109.47422 * 53.95410 * 19 10 9 45 45 H 1.09004 * 115.55148 * 154.37456 * 25 24 23 46 46 H 1.08997 * 117.49529 * 0.02562 * 26 25 24 47 47 H 1.09005 * 117.49803 * 145.02172 * 26 25 24 48 48 H 1.08998 * 117.49974 * 214.98122 * 27 25 24 49 49 H 1.08998 * 117.49595 * 359.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 7 2.2057 -3.6157 0.0015 11 6 1.5359 -4.8809 -0.3282 12 6 1.0340 -4.8309 -1.7726 13 7 0.3637 -6.0959 -2.1021 14 6 1.3201 -7.2125 -2.1096 15 6 0.5715 -8.5166 -2.3977 16 8 -0.1281 -8.3945 -3.6391 17 6 -1.0683 -7.3172 -3.6666 18 6 -0.3363 -6.0010 -3.3913 19 6 2.9052 -3.7105 1.2898 20 6 3.7755 -2.4948 1.4794 21 7 3.4292 -1.3654 2.0475 22 7 4.4469 -0.5760 2.0164 23 7 5.4335 -1.1726 1.4438 24 7 5.0590 -2.3579 1.0982 25 6 5.8770 -3.3653 0.4184 26 6 7.3702 -3.0724 0.2587 27 6 6.4431 -3.0050 -0.9567 28 1 -0.4850 0.8400 0.0004 29 1 0.6242 -2.5575 -0.8880 30 1 0.6247 -2.5564 0.8919 31 1 2.2407 -5.7049 -0.2167 32 1 0.6918 -5.0312 0.3448 33 1 0.3292 -4.0069 -1.8841 34 1 1.8781 -4.6806 -2.4456 35 1 2.0696 -7.0446 -2.8830 36 1 1.8082 -7.2802 -1.1374 37 1 -0.1409 -8.7120 -1.5961 38 1 1.2835 -9.3395 -2.4605 39 1 -1.8283 -7.4778 -2.9020 40 1 -1.5422 -7.2720 -4.6471 41 1 -1.0573 -5.1844 -3.3548 42 1 0.3866 -5.8130 -4.1852 43 1 3.5255 -4.6066 1.3013 44 1 2.1746 -3.7638 2.0969 45 1 5.5821 -4.4012 0.5855 46 1 7.7440 -2.1304 0.6598 47 1 8.0580 -3.9158 0.3209 48 1 6.5210 -3.8040 -1.6940 49 1 6.2066 -2.0187 -1.3556 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000081158446.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:35:20 Heat of formation + Delta-G solvation = 145.791071 kcal Electronic energy + Delta-G solvation = -30660.905054 eV Core-core repulsion = 26663.473230 eV Total energy + Delta-G solvation = -3997.431824 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -43.38093 -39.63531 -37.62284 -37.45810 -35.56794 -33.04435 -32.43023 -32.08689 -31.29229 -29.50376 -27.67990 -26.66728 -24.73392 -24.28559 -24.03210 -22.72897 -22.56091 -21.72509 -20.76508 -20.34126 -19.86118 -17.50637 -17.09761 -16.57271 -16.23825 -15.80631 -15.23400 -15.22444 -15.14174 -14.99202 -14.80117 -14.46833 -14.31478 -13.90356 -13.56298 -13.24067 -13.01930 -12.47341 -12.40842 -12.14368 -11.95811 -11.83611 -11.78666 -11.65807 -11.49094 -11.34303 -11.18943 -11.10749 -10.80875 -10.78820 -10.61109 -10.48872 -10.25872 -10.13023 -10.03193 -9.76330 -9.47410 -9.40935 -8.73811 -8.37882 -8.24005 -7.60263 -5.94513 -3.90484 1.93150 2.51324 3.21001 3.44596 3.52233 3.56790 3.65212 3.70988 3.81229 4.34278 4.54727 4.59880 4.64111 4.70640 4.77366 4.86756 4.93075 4.93872 5.04489 5.09977 5.20007 5.32993 5.36347 5.43955 5.45575 5.48337 5.52284 5.55876 5.67416 5.69946 5.76167 5.84570 5.86070 5.87727 5.96186 6.08904 6.20745 6.26546 6.30957 6.59257 6.83538 6.93563 6.97046 7.03179 7.10101 7.23610 7.68505 7.84309 8.10519 8.41915 9.01383 9.53196 9.71468 11.15965 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.010981 B = 0.003873 C = 0.003124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2549.130958 B = 7227.344799 C = 8960.019013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.072 3.928 3 Si 0.873 3.127 4 H -0.291 1.291 5 H -0.288 1.288 6 H -0.246 1.246 7 C -0.488 4.488 8 H 0.052 0.948 9 C 0.191 3.809 10 N -0.537 5.537 11 C 0.066 3.934 12 C 0.061 3.939 13 N -0.537 5.537 14 C 0.015 3.985 15 C 0.064 3.936 16 O -0.389 6.389 17 C 0.065 3.935 18 C 0.019 3.981 19 C 0.150 3.850 20 C 0.220 3.780 21 N -0.241 5.241 22 N -0.084 5.084 23 N -0.129 5.129 24 N -0.283 5.283 25 C 0.069 3.931 26 C -0.164 4.164 27 C -0.160 4.160 28 H 0.259 0.741 29 H 0.035 0.965 30 H 0.000 1.000 31 H 0.060 0.940 32 H 0.039 0.961 33 H 0.088 0.912 34 H 0.042 0.958 35 H 0.041 0.959 36 H 0.087 0.913 37 H 0.058 0.942 38 H 0.094 0.906 39 H 0.059 0.941 40 H 0.096 0.904 41 H 0.088 0.912 42 H 0.042 0.958 43 H 0.077 0.923 44 H 0.067 0.933 45 H 0.150 0.850 46 H 0.112 0.888 47 H 0.111 0.889 48 H 0.112 0.888 49 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.683 -17.961 -3.963 19.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.130 4.130 3 Si 0.701 3.299 4 H -0.218 1.218 5 H -0.214 1.214 6 H -0.170 1.170 7 C -0.528 4.528 8 H 0.070 0.930 9 C 0.067 3.933 10 N -0.263 5.263 11 C -0.063 4.063 12 C -0.066 4.066 13 N -0.263 5.263 14 C -0.113 4.113 15 C -0.013 4.013 16 O -0.308 6.308 17 C -0.012 4.012 18 C -0.110 4.110 19 C 0.018 3.982 20 C -0.057 4.057 21 N -0.090 5.090 22 N -0.078 5.078 23 N -0.114 5.114 24 N -0.084 5.084 25 C -0.036 4.036 26 C -0.202 4.202 27 C -0.199 4.199 28 H 0.069 0.931 29 H 0.053 0.947 30 H 0.018 0.982 31 H 0.078 0.922 32 H 0.057 0.943 33 H 0.106 0.894 34 H 0.060 0.940 35 H 0.059 0.941 36 H 0.105 0.895 37 H 0.077 0.923 38 H 0.112 0.888 39 H 0.078 0.922 40 H 0.114 0.886 41 H 0.107 0.893 42 H 0.060 0.940 43 H 0.095 0.905 44 H 0.085 0.915 45 H 0.168 0.832 46 H 0.131 0.869 47 H 0.129 0.871 48 H 0.130 0.870 49 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 6.796 -16.604 -3.609 18.300 hybrid contribution 0.197 0.490 -0.356 0.636 sum 6.993 -16.114 -3.965 18.008 Atomic orbital electron populations 1.69932 1.06026 1.26658 1.51153 1.24703 0.94557 0.98907 0.94818 0.86815 0.82045 0.83608 0.77473 1.21797 1.21417 1.16979 1.20979 0.92612 0.89702 1.49462 0.92976 1.19905 0.89840 0.86826 0.96778 1.62186 1.32316 1.04502 1.27316 1.21881 0.96930 0.91823 0.95661 1.22121 0.97966 0.90299 0.96217 1.62163 1.29123 1.04746 1.30258 1.22822 0.94511 0.91951 1.02005 1.22667 0.95562 0.96550 0.86551 1.87953 1.55864 1.51408 1.35580 1.22668 0.91066 0.85329 1.02169 1.22753 0.98728 0.99060 0.90412 1.20175 0.94872 0.89417 0.93714 1.25324 0.83739 0.98538 0.98149 1.75288 1.17899 0.97973 1.17865 1.78591 0.93279 1.21656 1.14262 1.78640 1.24014 0.92010 1.16699 1.47625 1.10334 1.11043 1.39408 1.21971 0.92347 0.90480 0.98779 1.23390 0.90404 1.04971 1.01447 1.23401 1.01148 1.04745 0.90604 0.93134 0.94711 0.98223 0.92200 0.94318 0.89414 0.94012 0.94073 0.89479 0.92341 0.88764 0.92249 0.88609 0.89341 0.94011 0.90481 0.91531 0.83235 0.86935 0.87107 0.86958 0.87590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.96 13.29 55.43 0.74 -26.22 16 2 C 0.07 2.09 5.46 -17.82 -0.10 1.99 16 3 Si 0.87 23.27 29.54 -169.99 -5.02 18.25 16 4 H -0.29 -7.71 7.11 56.52 0.40 -7.31 16 5 H -0.29 -7.70 7.11 56.52 0.40 -7.30 16 6 H -0.25 -6.63 6.34 56.52 0.36 -6.27 16 7 C -0.49 -13.28 6.35 -34.44 -0.22 -13.49 16 8 H 0.05 1.43 4.83 -52.49 -0.25 1.18 16 9 C 0.19 4.60 4.60 -4.98 -0.02 4.58 16 10 N -0.54 -9.91 4.56 -237.52 -1.08 -11.00 16 11 C 0.07 0.98 4.89 -3.83 -0.02 0.96 16 12 C 0.06 0.92 4.91 -3.82 -0.02 0.90 16 13 N -0.54 -6.84 4.73 -234.30 -1.11 -7.95 16 14 C 0.02 0.16 5.44 -3.70 -0.02 0.14 16 15 C 0.06 0.61 7.01 37.21 0.26 0.88 16 16 O -0.39 -4.51 10.83 -35.23 -0.38 -4.89 16 17 C 0.06 0.66 7.01 37.21 0.26 0.92 16 18 C 0.02 0.22 5.64 -3.71 -0.02 0.20 16 19 C 0.15 2.51 5.30 -4.97 -0.03 2.48 16 20 C 0.22 4.37 5.07 -155.43 -0.79 3.58 16 21 N -0.24 -5.76 9.65 32.70 0.32 -5.45 16 22 N -0.08 -2.02 12.45 60.35 0.75 -1.27 16 23 N -0.13 -2.69 12.69 60.35 0.77 -1.93 16 24 N -0.28 -5.05 3.64 -51.80 -0.19 -5.24 16 25 C 0.07 0.84 6.63 -67.93 -0.45 0.39 16 26 C -0.16 -1.63 10.15 -26.73 -0.27 -1.90 16 27 C -0.16 -1.79 10.46 -26.73 -0.28 -2.07 16 28 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 29 H 0.04 0.89 5.98 -51.93 -0.31 0.58 16 30 H 0.00 0.00 7.99 -51.93 -0.41 -0.42 16 31 H 0.06 0.73 6.31 -51.93 -0.33 0.40 16 32 H 0.04 0.61 8.12 -51.93 -0.42 0.19 16 33 H 0.09 1.54 6.20 -51.93 -0.32 1.22 16 34 H 0.04 0.65 8.12 -51.93 -0.42 0.23 16 35 H 0.04 0.46 8.14 -51.93 -0.42 0.03 16 36 H 0.09 0.83 6.38 -51.93 -0.33 0.50 16 37 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 40 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.09 1.03 8.09 -51.93 -0.42 0.61 16 42 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.08 0.95 7.14 -51.93 -0.37 0.58 16 44 H 0.07 1.14 8.01 -51.93 -0.42 0.73 16 45 H 0.15 1.37 7.41 -51.93 -0.38 0.99 16 46 H 0.11 1.30 7.85 -51.93 -0.41 0.90 16 47 H 0.11 0.75 8.14 -51.93 -0.42 0.32 16 48 H 0.11 0.95 8.14 -51.93 -0.42 0.53 16 49 H 0.11 1.48 8.14 -51.93 -0.42 1.06 16 LS Contribution 384.85 15.07 5.80 5.80 Total: -1.00 -34.45 384.85 -8.91 -43.36 By element: Atomic # 1 Polarization: 4.77 SS G_CDS: -7.79 Total: -3.02 kcal Atomic # 6 Polarization: 1.27 SS G_CDS: -1.71 Total: -0.44 kcal Atomic # 7 Polarization: -59.24 SS G_CDS: 0.19 Total: -59.05 kcal Atomic # 8 Polarization: -4.51 SS G_CDS: -0.38 Total: -4.89 kcal Atomic # 14 Polarization: 23.27 SS G_CDS: -5.02 Total: 18.25 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -34.45 -8.91 -43.36 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081158446.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 189.149 kcal (2) G-P(sol) polarization free energy of solvation -34.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 154.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.358 kcal (6) G-S(sol) free energy of system = (1) + (5) 145.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds