Wall clock time and date at job start Tue Mar 31 2020 19:35:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 119.99954 * 2 1 4 4 H 1.48500 * 109.47035 * 269.99909 * 3 2 1 5 5 H 1.48498 * 109.47298 * 29.99380 * 3 2 1 6 6 H 1.48499 * 109.47475 * 150.00144 * 3 2 1 7 7 C 1.37877 * 119.99932 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99814 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00211 * 359.97438 * 7 2 1 10 10 N 1.46901 * 109.47345 * 179.97438 * 9 7 2 11 11 C 1.46899 * 111.00289 * 193.95604 * 10 9 7 12 12 C 1.52995 * 109.46789 * 66.04673 * 11 10 9 13 13 N 1.46906 * 109.46751 * 180.02562 * 12 11 10 14 14 C 1.47019 * 110.99647 * 293.63110 * 13 12 11 15 15 C 1.53107 * 109.25489 * 177.60774 * 14 13 12 16 16 O 1.43013 * 109.25543 * 56.85169 * 15 14 13 17 17 C 1.43010 * 113.74232 * 301.32854 * 16 15 14 18 18 C 1.47013 * 110.99952 * 170.00207 * 13 12 11 19 19 C 1.46907 * 110.99625 * 70.00351 * 10 9 7 20 20 C 1.50703 * 109.46919 * 293.95119 * 19 10 9 21 21 N 1.31074 * 126.65657 * 89.97890 * 20 19 10 22 22 N 1.28837 * 107.99117 * 180.02562 * 21 20 19 23 23 N 1.28737 * 109.39741 * 359.97438 * 22 21 20 24 24 N 1.29021 * 108.81034 * 0.02562 * 23 22 21 25 25 C 1.46496 * 126.43980 * 179.97438 * 24 23 22 26 26 C 1.53001 * 117.50042 * 8.66398 * 25 24 23 27 27 C 1.53005 * 117.50033 * 300.03955 * 25 24 23 28 28 H 0.96997 * 120.00332 * 359.97438 * 1 2 3 29 29 H 1.08994 * 109.46899 * 60.00144 * 9 7 2 30 30 H 1.08999 * 109.47621 * 300.00167 * 9 7 2 31 31 H 1.08997 * 109.47053 * 186.04912 * 11 10 9 32 32 H 1.09001 * 109.46696 * 306.04849 * 11 10 9 33 33 H 1.08997 * 109.47518 * 299.99954 * 12 11 10 34 34 H 1.09001 * 109.47358 * 60.00581 * 12 11 10 35 35 H 1.08994 * 109.51141 * 297.54172 * 14 13 12 36 36 H 1.08997 * 109.50643 * 57.67934 * 14 13 12 37 37 H 1.09004 * 109.50489 * 296.91726 * 15 14 13 38 38 H 1.09001 * 109.53934 * 176.80797 * 15 14 13 39 39 H 1.09003 * 109.50693 * 298.73815 * 17 16 15 40 40 H 1.08994 * 109.54220 * 178.62974 * 17 16 15 41 41 H 1.08996 * 109.50963 * 302.32484 * 18 13 12 42 42 H 1.09001 * 109.51098 * 62.41339 * 18 13 12 43 43 H 1.08995 * 109.46851 * 173.96026 * 19 10 9 44 44 H 1.08996 * 109.47422 * 53.95410 * 19 10 9 45 45 H 1.09004 * 115.55148 * 154.37456 * 25 24 23 46 46 H 1.08997 * 117.49529 * 0.02562 * 26 25 24 47 47 H 1.09005 * 117.49803 * 145.02172 * 26 25 24 48 48 H 1.08998 * 117.49974 * 214.98122 * 27 25 24 49 49 H 1.08998 * 117.49595 * 359.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 7 2.2057 -3.6157 0.0015 11 6 1.5359 -4.8809 -0.3282 12 6 1.0340 -4.8309 -1.7726 13 7 0.3637 -6.0959 -2.1021 14 6 1.3201 -7.2125 -2.1096 15 6 0.5715 -8.5166 -2.3977 16 8 -0.1281 -8.3945 -3.6391 17 6 -1.0683 -7.3172 -3.6666 18 6 -0.3363 -6.0010 -3.3913 19 6 2.9052 -3.7105 1.2898 20 6 3.7755 -2.4948 1.4794 21 7 3.4292 -1.3654 2.0475 22 7 4.4469 -0.5760 2.0164 23 7 5.4335 -1.1726 1.4438 24 7 5.0590 -2.3579 1.0982 25 6 5.8770 -3.3653 0.4184 26 6 7.3702 -3.0724 0.2587 27 6 6.4431 -3.0050 -0.9567 28 1 -0.4850 0.8400 0.0004 29 1 0.6242 -2.5575 -0.8880 30 1 0.6247 -2.5564 0.8919 31 1 2.2407 -5.7049 -0.2167 32 1 0.6918 -5.0312 0.3448 33 1 0.3292 -4.0069 -1.8841 34 1 1.8781 -4.6806 -2.4456 35 1 2.0696 -7.0446 -2.8830 36 1 1.8082 -7.2802 -1.1374 37 1 -0.1409 -8.7120 -1.5961 38 1 1.2835 -9.3395 -2.4605 39 1 -1.8283 -7.4778 -2.9020 40 1 -1.5422 -7.2720 -4.6471 41 1 -1.0573 -5.1844 -3.3548 42 1 0.3866 -5.8130 -4.1852 43 1 3.5255 -4.6066 1.3013 44 1 2.1746 -3.7638 2.0969 45 1 5.5821 -4.4012 0.5855 46 1 7.7440 -2.1304 0.6598 47 1 8.0580 -3.9158 0.3209 48 1 6.5210 -3.8040 -1.6940 49 1 6.2066 -2.0187 -1.3556 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000081158446.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:35:19 Heat of formation + Delta-G solvation = 118.433492 kcal Electronic energy + Delta-G solvation = -30662.091368 eV Core-core repulsion = 26663.473230 eV Total energy + Delta-G solvation = -3998.618138 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -44.93940 -40.53926 -38.86707 -38.63154 -36.64649 -34.70514 -34.29512 -33.56094 -32.12489 -30.74565 -29.56878 -27.83611 -26.06145 -25.78205 -24.93866 -24.35547 -23.53139 -23.01416 -21.98043 -21.42790 -21.18597 -19.10829 -18.53604 -17.61440 -17.43119 -17.07543 -16.79436 -16.35071 -16.16818 -16.09177 -15.96641 -15.93284 -15.51455 -15.33802 -14.69031 -14.44025 -14.28171 -14.13973 -13.80614 -13.66460 -13.22790 -13.19098 -13.08080 -12.87494 -12.72471 -12.54646 -12.53271 -12.47014 -12.42297 -12.26218 -12.04699 -11.82574 -11.60545 -11.51810 -11.45276 -11.29278 -10.87929 -10.64867 -10.58105 -10.28098 -9.37645 -9.17951 -8.17488 -6.13651 0.45022 1.25762 1.27193 1.33323 1.53284 1.58479 2.41904 2.63529 2.70171 3.00033 3.19292 3.27322 3.42579 3.46545 3.68782 3.82762 3.84083 3.91093 3.99904 4.07403 4.22110 4.28823 4.29989 4.39239 4.43829 4.58122 4.60991 4.67055 4.69995 4.73214 4.77893 4.79198 4.86893 4.92759 4.95060 4.98087 5.01558 5.09987 5.12268 5.15482 5.21395 5.27888 5.58353 5.65589 5.94209 6.02974 6.08614 6.16301 6.22428 6.52680 6.87509 7.49994 7.92187 8.93623 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.010981 B = 0.003873 C = 0.003124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2549.130958 B = 7227.344799 C = 8960.019013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.026 3.974 3 Si 0.912 3.088 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.253 1.253 7 C -0.472 4.472 8 H 0.050 0.950 9 C 0.208 3.792 10 N -0.535 5.535 11 C 0.072 3.928 12 C 0.072 3.928 13 N -0.543 5.543 14 C 0.015 3.985 15 C 0.062 3.938 16 O -0.405 6.405 17 C 0.069 3.931 18 C 0.017 3.983 19 C 0.148 3.852 20 C 0.215 3.785 21 N -0.290 5.290 22 N -0.125 5.125 23 N -0.131 5.131 24 N -0.269 5.269 25 C 0.037 3.963 26 C -0.142 4.142 27 C -0.161 4.161 28 H 0.257 0.743 29 H 0.017 0.983 30 H -0.031 1.031 31 H 0.105 0.895 32 H 0.031 0.969 33 H 0.050 0.950 34 H 0.036 0.964 35 H 0.039 0.961 36 H 0.105 0.895 37 H 0.061 0.939 38 H 0.119 0.881 39 H 0.061 0.939 40 H 0.113 0.887 41 H 0.080 0.920 42 H 0.036 0.964 43 H 0.138 0.862 44 H 0.061 0.939 45 H 0.193 0.807 46 H 0.090 0.910 47 H 0.156 0.844 48 H 0.148 0.852 49 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.867 -21.873 -4.554 24.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.172 4.172 3 Si 0.740 3.260 4 H -0.215 1.215 5 H -0.218 1.218 6 H -0.176 1.176 7 C -0.511 4.511 8 H 0.068 0.932 9 C 0.082 3.918 10 N -0.260 5.260 11 C -0.056 4.056 12 C -0.056 4.056 13 N -0.269 5.269 14 C -0.112 4.112 15 C -0.015 4.015 16 O -0.323 6.323 17 C -0.008 4.008 18 C -0.111 4.111 19 C 0.017 3.983 20 C -0.063 4.063 21 N -0.139 5.139 22 N -0.119 5.119 23 N -0.117 5.117 24 N -0.070 5.070 25 C -0.065 4.065 26 C -0.180 4.180 27 C -0.199 4.199 28 H 0.065 0.935 29 H 0.035 0.965 30 H -0.014 1.014 31 H 0.123 0.877 32 H 0.049 0.951 33 H 0.069 0.931 34 H 0.055 0.945 35 H 0.057 0.943 36 H 0.123 0.877 37 H 0.079 0.921 38 H 0.137 0.863 39 H 0.079 0.921 40 H 0.131 0.869 41 H 0.098 0.902 42 H 0.054 0.946 43 H 0.156 0.844 44 H 0.079 0.921 45 H 0.210 0.790 46 H 0.109 0.891 47 H 0.173 0.827 48 H 0.166 0.834 49 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 9.009 -20.539 -4.218 22.822 hybrid contribution -0.345 1.571 -0.207 1.622 sum 8.665 -18.969 -4.425 21.318 Atomic orbital electron populations 1.70009 1.06877 1.26751 1.53664 1.25235 0.95022 1.01123 0.95847 0.86206 0.80885 0.81735 0.77188 1.21542 1.21762 1.17626 1.21270 0.92558 0.90826 1.46460 0.93219 1.19460 0.89898 0.88079 0.94336 1.62010 1.30888 1.04561 1.28581 1.21951 0.97608 0.90986 0.95070 1.21876 0.96816 0.90526 0.96381 1.62165 1.29600 1.04285 1.30824 1.22936 0.94113 0.91288 1.02913 1.22840 0.95942 0.96730 0.85955 1.87938 1.56168 1.51535 1.36701 1.22702 0.90715 0.84129 1.03264 1.22791 0.98547 0.99916 0.89892 1.20482 0.95032 0.90339 0.92406 1.25772 0.84672 0.98432 0.97388 1.75147 1.19113 0.99803 1.19884 1.78537 0.94042 1.22992 1.16316 1.78502 1.23574 0.93324 1.16261 1.47995 1.10259 1.10793 1.37988 1.22891 0.93501 0.90818 0.99294 1.23513 0.89526 1.05591 0.99323 1.23461 1.01363 1.04035 0.91082 0.93450 0.96548 1.01377 0.87699 0.95059 0.93134 0.94537 0.94314 0.87686 0.92069 0.86285 0.92074 0.86905 0.90171 0.94565 0.84431 0.92055 0.78991 0.89118 0.82668 0.83449 0.91240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.94 13.29 21.45 0.28 -57.65 16 2 C 0.03 1.53 5.46 84.65 0.46 1.99 16 3 Si 0.91 49.40 29.54 68.60 2.03 51.43 16 4 H -0.29 -15.30 7.11 99.48 0.71 -14.59 16 5 H -0.29 -15.77 7.11 99.48 0.71 -15.06 16 6 H -0.25 -13.87 6.34 99.48 0.63 -13.24 16 7 C -0.47 -26.19 6.35 25.60 0.16 -26.03 16 8 H 0.05 2.77 4.83 -2.91 -0.01 2.75 16 9 C 0.21 10.23 4.60 85.56 0.39 10.62 16 10 N -0.53 -18.82 4.56 -905.39 -4.13 -22.95 16 11 C 0.07 1.94 4.89 86.30 0.42 2.36 16 12 C 0.07 2.08 4.91 86.30 0.42 2.50 16 13 N -0.54 -12.90 4.73 -895.20 -4.23 -17.13 16 14 C 0.02 0.27 5.44 86.32 0.47 0.74 16 15 C 0.06 0.98 7.01 72.02 0.50 1.49 16 16 O -0.40 -8.34 10.83 -148.98 -1.61 -9.96 16 17 C 0.07 1.30 7.01 72.02 0.50 1.80 16 18 C 0.02 0.38 5.64 86.32 0.49 0.87 16 19 C 0.15 4.55 5.30 85.56 0.45 5.00 16 20 C 0.22 8.29 5.07 138.13 0.70 8.99 16 21 N -0.29 -14.04 9.65 -50.45 -0.49 -14.53 16 22 N -0.13 -6.13 12.45 37.01 0.46 -5.66 16 23 N -0.13 -5.45 12.69 37.02 0.47 -4.99 16 24 N -0.27 -9.12 3.64 -317.81 -1.16 -10.27 16 25 C 0.04 0.75 6.63 44.99 0.30 1.05 16 26 C -0.14 -2.26 10.15 30.60 0.31 -1.94 16 27 C -0.16 -3.06 10.46 30.60 0.32 -2.74 16 28 H 0.26 15.47 8.31 -92.71 -0.77 14.70 16 29 H 0.02 0.88 5.98 -2.39 -0.01 0.86 16 30 H -0.03 -1.74 7.99 -2.39 -0.02 -1.76 16 31 H 0.10 1.96 6.31 -2.39 -0.02 1.94 16 32 H 0.03 0.93 8.12 -2.39 -0.02 0.91 16 33 H 0.05 1.83 6.20 -2.39 -0.01 1.82 16 34 H 0.04 1.08 8.12 -2.39 -0.02 1.06 16 35 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 36 H 0.11 1.46 6.38 -2.39 -0.02 1.45 16 37 H 0.06 0.95 8.14 -2.38 -0.02 0.93 16 38 H 0.12 1.30 8.14 -2.39 -0.02 1.28 16 39 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 40 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16 41 H 0.08 1.91 8.09 -2.39 -0.02 1.89 16 42 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 43 H 0.14 2.55 7.14 -2.39 -0.02 2.54 16 44 H 0.06 2.00 8.01 -2.39 -0.02 1.98 16 45 H 0.19 2.25 7.41 -2.38 -0.02 2.23 16 46 H 0.09 1.91 7.85 -2.39 -0.02 1.89 16 47 H 0.16 1.14 8.14 -2.38 -0.02 1.12 16 48 H 0.15 1.76 8.14 -2.39 -0.02 1.74 16 49 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 Total: -1.00 -80.80 384.85 -1.59 -82.39 By element: Atomic # 1 Polarization: 1.73 SS G_CDS: 0.88 Total: 2.61 kcal Atomic # 6 Polarization: 0.80 SS G_CDS: 5.91 Total: 6.71 kcal Atomic # 7 Polarization: -124.39 SS G_CDS: -8.79 Total: -133.18 kcal Atomic # 8 Polarization: -8.34 SS G_CDS: -1.61 Total: -9.96 kcal Atomic # 14 Polarization: 49.40 SS G_CDS: 2.03 Total: 51.43 kcal Total: -80.80 -1.59 -82.39 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081158446.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 200.824 kcal (2) G-P(sol) polarization free energy of solvation -80.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 120.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.390 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds