Wall clock time and date at job start Tue Mar 31 2020 19:17:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42891 * 114.00412 * 2 1 4 4 C 1.52998 * 109.47647 * 180.02562 * 3 2 1 5 5 N 1.46499 * 109.47290 * 180.02562 * 4 3 2 6 6 C 1.35042 * 124.88390 * 124.97505 * 5 4 3 7 7 C 1.35366 * 107.22430 * 179.72424 * 6 5 4 8 8 C 1.41500 * 105.50347 * 0.41237 * 7 6 5 9 9 C 1.47717 * 126.51423 * 179.84383 * 8 7 6 10 10 O 1.21571 * 119.99995 * 359.71164 * 9 8 7 11 11 N 1.34777 * 119.99478 * 179.71520 * 9 8 7 12 12 C 1.46507 * 119.99502 * 179.97438 * 11 9 8 13 13 C 1.53001 * 109.46949 * 179.97438 * 12 11 9 14 14 H 1.08998 * 109.51975 * 54.92188 * 13 12 11 15 15 C 1.53040 * 109.49747 * 174.99934 * 13 12 11 16 16 C 1.53037 * 109.52613 * 181.31207 * 15 13 12 17 17 C 1.53191 * 109.31196 * 298.64307 * 16 15 13 18 18 N 1.46926 * 108.77877 * 54.63626 * 17 16 15 19 19 C 1.36939 * 120.63312 * 126.41026 * 18 17 16 20 20 H 1.08006 * 119.99643 * 332.56741 * 19 18 17 21 21 C 1.38810 * 120.00240 * 152.56257 * 19 18 17 22 22 N 1.31614 * 119.99902 * 159.28584 * 21 19 18 23 23 Si 1.86796 * 119.99889 * 339.29367 * 21 19 18 24 24 H 1.48498 * 109.47390 * 92.94164 * 23 21 19 25 25 H 1.48501 * 109.47116 * 212.94243 * 23 21 19 26 26 H 1.48504 * 109.47242 * 332.94177 * 23 21 19 27 27 C 1.46922 * 118.73478 * 306.39146 * 18 17 16 28 28 N 1.28465 * 124.88679 * 304.97248 * 5 4 3 29 29 H 1.09001 * 109.47533 * 300.00148 * 1 2 3 30 30 H 1.09003 * 109.47159 * 60.00248 * 1 2 3 31 31 H 1.09003 * 109.47305 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47316 * 59.99550 * 3 2 1 33 33 H 1.09006 * 109.47179 * 299.99850 * 3 2 1 34 34 H 1.09001 * 109.47208 * 59.99388 * 4 3 2 35 35 H 1.09006 * 109.46631 * 300.00090 * 4 3 2 36 36 H 1.07997 * 126.38603 * 359.97438 * 6 5 4 37 37 H 1.08007 * 127.24416 * 180.25860 * 7 6 5 38 38 H 0.96999 * 120.00640 * 359.97438 * 11 9 8 39 39 H 1.09001 * 109.46884 * 60.00267 * 12 11 9 40 40 H 1.08994 * 109.47126 * 299.99794 * 12 11 9 41 41 H 1.08997 * 109.45639 * 61.30129 * 15 13 12 42 42 H 1.08998 * 109.45780 * 301.32845 * 15 13 12 43 43 H 1.08996 * 109.49961 * 58.59706 * 16 15 13 44 44 H 1.09000 * 109.49502 * 178.69510 * 16 15 13 45 45 H 1.09005 * 109.58874 * 174.42419 * 17 16 15 46 46 H 1.09004 * 109.58874 * 294.70299 * 17 16 15 47 47 H 0.97006 * 119.99827 * 179.97438 * 22 21 19 48 48 H 1.09007 * 109.58531 * 173.39369 * 27 18 17 49 49 H 1.08993 * 109.59216 * 293.67350 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3053 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 4.1313 2.5229 0.0000 6 6 5.0259 2.9696 0.9076 7 6 5.3400 4.2418 0.5683 8 6 4.5729 4.5257 -0.5864 9 6 4.5585 5.7949 -1.3419 10 8 5.2511 6.7260 -0.9794 11 7 3.7773 5.9207 -2.4330 12 6 3.7625 7.1798 -3.1820 13 6 2.8009 7.0577 -4.3657 14 1 1.8178 6.7534 -4.0065 15 6 2.6897 8.4093 -5.0750 16 6 1.7030 8.2963 -6.2393 17 6 2.2218 7.2635 -7.2447 18 7 2.4694 5.9990 -6.5387 19 6 1.9069 4.8314 -6.9808 20 1 0.9762 4.8538 -7.5284 21 6 2.5328 3.6190 -6.7252 22 7 1.8419 2.4997 -6.7687 23 14 4.3556 3.5764 -6.3191 24 1 4.5359 3.6254 -4.8459 25 1 4.9516 2.3238 -6.8493 26 1 5.0284 4.7459 -6.9394 27 6 3.3323 6.0111 -5.3497 28 7 3.8781 3.4403 -0.8628 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.6886 1.8463 0.8899 33 1 1.6887 1.8463 -0.8900 34 1 3.8567 0.6437 -0.8908 35 1 3.8574 0.6434 0.8892 36 1 5.4204 2.4139 1.7454 37 1 6.0291 4.9021 1.0740 38 1 3.2249 5.1778 -2.7224 39 1 4.7657 7.3954 -3.5500 40 1 3.4339 7.9876 -2.5282 41 1 3.6685 8.7012 -5.4555 42 1 2.3351 9.1611 -4.3700 43 1 0.7302 7.9804 -5.8625 44 1 1.6066 9.2649 -6.7297 45 1 1.4769 7.1067 -8.0249 46 1 3.1490 7.6225 -7.6917 47 1 2.2794 1.6524 -6.5905 48 1 3.3200 5.0278 -4.8793 49 1 4.3518 6.2642 -5.6405 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000275982961.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:17:07 Heat of formation + Delta-G solvation = 19.912742 kcal Electronic energy + Delta-G solvation = -29798.965565 eV Core-core repulsion = 25763.782496 eV Total energy + Delta-G solvation = -4035.183069 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -42.76623 -39.37477 -38.26157 -37.95289 -34.76315 -34.14358 -33.05969 -31.31229 -30.76659 -30.45923 -29.60238 -26.81135 -25.89846 -25.27418 -24.12532 -22.64837 -22.05602 -21.50537 -20.85880 -19.91160 -19.26974 -18.02691 -17.11949 -16.79424 -16.54678 -16.25559 -15.85960 -15.62368 -15.54000 -15.00628 -14.72086 -14.18016 -14.05899 -13.94152 -13.79795 -13.44788 -13.24930 -13.23930 -13.15731 -12.77294 -12.43668 -12.27571 -12.04738 -11.93052 -11.63502 -11.57976 -11.43704 -10.92820 -10.76271 -10.57507 -10.50895 -10.11178 -10.06626 -10.02845 -9.81082 -9.67142 -9.44089 -9.39083 -9.19321 -8.80038 -8.60318 -6.96780 -5.96006 -3.31070 1.56584 2.04161 2.12176 3.32158 3.34700 3.49538 3.52252 3.53417 3.56604 4.19399 4.51762 4.52598 4.64513 4.64647 4.83336 4.85769 5.04792 5.09944 5.18915 5.20287 5.27948 5.29961 5.34772 5.42702 5.45750 5.46443 5.55585 5.64108 5.65725 5.83099 5.89267 6.07091 6.13243 6.16270 6.29082 6.32759 6.36467 6.56749 6.57794 6.59009 6.63680 6.70720 6.73247 6.76654 6.99219 7.60337 7.89583 7.96092 8.32318 8.37026 8.94165 9.71959 10.10526 11.19797 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.008988 B = 0.004012 C = 0.003223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3114.573339 B = 6977.666553 C = 8685.114088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.390 6.390 3 C 0.049 3.951 4 C 0.124 3.876 5 N -0.281 5.281 6 C -0.018 4.018 7 C -0.178 4.178 8 C -0.014 4.014 9 C 0.603 3.397 10 O -0.541 6.541 11 N -0.712 5.712 12 C 0.126 3.874 13 C -0.119 4.119 14 H 0.080 0.920 15 C -0.101 4.101 16 C -0.134 4.134 17 C 0.146 3.854 18 N -0.606 5.606 19 C -0.260 4.260 20 H 0.086 0.914 21 C 0.026 3.974 22 N -0.907 5.907 23 Si 0.877 3.123 24 H -0.285 1.285 25 H -0.304 1.304 26 H -0.272 1.272 27 C 0.133 3.867 28 N -0.253 5.253 29 H 0.042 0.958 30 H 0.050 0.950 31 H 0.090 0.910 32 H 0.056 0.944 33 H 0.074 0.926 34 H 0.105 0.895 35 H 0.112 0.888 36 H 0.183 0.817 37 H 0.163 0.837 38 H 0.411 0.589 39 H 0.067 0.933 40 H 0.068 0.932 41 H 0.058 0.942 42 H 0.054 0.946 43 H 0.062 0.938 44 H 0.055 0.945 45 H 0.062 0.938 46 H 0.022 0.978 47 H 0.262 0.738 48 H 0.071 0.929 49 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.319 0.372 16.608 16.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.308 6.308 3 C -0.029 4.029 4 C 0.003 3.997 5 N -0.070 5.070 6 C -0.160 4.160 7 C -0.206 4.206 8 C -0.175 4.175 9 C 0.387 3.613 10 O -0.417 6.417 11 N -0.363 5.363 12 C 0.002 3.998 13 C -0.140 4.140 14 H 0.098 0.902 15 C -0.139 4.139 16 C -0.173 4.173 17 C 0.020 3.980 18 N -0.329 5.329 19 C -0.388 4.388 20 H 0.103 0.897 21 C -0.173 4.173 22 N -0.550 5.550 23 Si 0.707 3.293 24 H -0.213 1.213 25 H -0.233 1.233 26 H -0.197 1.197 27 C 0.007 3.993 28 N -0.089 5.089 29 H 0.061 0.939 30 H 0.069 0.931 31 H 0.109 0.891 32 H 0.074 0.926 33 H 0.092 0.908 34 H 0.124 0.876 35 H 0.130 0.870 36 H 0.200 0.800 37 H 0.181 0.819 38 H 0.247 0.753 39 H 0.085 0.915 40 H 0.086 0.914 41 H 0.077 0.923 42 H 0.073 0.927 43 H 0.080 0.920 44 H 0.074 0.926 45 H 0.080 0.920 46 H 0.040 0.960 47 H 0.072 0.928 48 H 0.089 0.911 49 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 1.062 0.123 16.062 16.097 hybrid contribution 1.185 -0.158 0.703 1.387 sum 2.247 -0.035 16.765 16.915 Atomic orbital electron populations 1.22806 0.79674 1.03188 1.00636 1.87755 1.20820 1.26557 1.95645 1.22644 0.91949 0.85788 1.02498 1.21711 0.93330 0.78390 1.06265 1.45352 1.31225 1.11580 1.18891 1.22875 0.98033 0.96654 0.98418 1.21763 1.04462 0.96029 0.98391 1.22023 1.01779 0.94106 0.99587 1.16873 0.79675 0.84871 0.79858 1.90760 1.42712 1.39456 1.68797 1.45977 1.45124 1.17496 1.27683 1.21501 1.00477 0.85182 0.92669 1.21964 0.99371 0.97953 0.94666 0.90156 1.21344 0.99791 0.95430 0.97304 1.21987 0.99121 0.98995 0.97233 1.20953 0.97824 0.85923 0.93275 1.44342 1.57253 1.04675 1.26623 1.18930 1.03493 0.82410 1.33942 0.89664 1.25246 0.97504 0.95161 0.99396 1.69835 1.35220 0.97914 1.52009 0.87046 0.88220 0.76440 0.77583 1.21264 1.23255 1.19706 1.21368 0.92982 0.97384 0.87530 1.73607 1.22580 0.97579 1.15137 0.93950 0.93141 0.89125 0.92587 0.90817 0.87643 0.86954 0.79985 0.81929 0.75285 0.91462 0.91408 0.92290 0.92716 0.91963 0.92591 0.91978 0.96036 0.92834 0.91109 0.95671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 11.01 101.05 1.11 1.40 16 2 O -0.39 -4.20 10.70 -35.23 -0.38 -4.57 16 3 C 0.05 0.50 6.04 37.16 0.22 0.73 16 4 C 0.12 1.15 6.77 -4.04 -0.03 1.12 16 5 N -0.28 -3.37 3.41 -61.33 -0.21 -3.58 16 6 C -0.02 -0.18 11.40 -17.16 -0.20 -0.38 16 7 C -0.18 -2.28 10.81 -39.36 -0.43 -2.71 16 8 C -0.01 -0.23 7.13 -82.77 -0.59 -0.82 16 9 C 0.60 10.68 7.83 -12.39 -0.10 10.58 16 10 O -0.54 -10.52 16.93 5.30 0.09 -10.43 16 11 N -0.71 -12.33 5.33 -61.29 -0.33 -12.66 16 12 C 0.13 2.04 5.07 -4.04 -0.02 2.02 16 13 C -0.12 -2.06 2.37 -90.51 -0.21 -2.28 16 14 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 15 C -0.10 -1.53 5.17 -26.69 -0.14 -1.67 16 16 C -0.13 -2.14 6.08 -26.61 -0.16 -2.30 16 17 C 0.15 2.86 6.52 -3.71 -0.02 2.83 16 18 N -0.61 -14.32 2.77 -172.34 -0.48 -14.79 16 19 C -0.26 -7.22 10.03 -15.06 -0.15 -7.37 16 20 H 0.09 2.52 8.06 -52.48 -0.42 2.10 16 21 C 0.03 0.75 5.23 -17.43 -0.09 0.65 16 22 N -0.91 -27.57 13.97 55.49 0.78 -26.79 16 23 Si 0.88 22.76 24.35 -169.99 -4.14 18.62 16 24 H -0.29 -7.19 6.62 56.52 0.37 -6.81 16 25 H -0.30 -8.08 7.11 56.52 0.40 -7.68 16 26 H -0.27 -7.04 6.64 56.52 0.38 -6.66 16 27 C 0.13 2.89 3.29 -3.73 -0.01 2.87 16 28 N -0.25 -3.94 11.36 33.42 0.38 -3.56 16 29 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.07 0.91 8.08 -51.93 -0.42 0.49 16 34 H 0.11 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.11 0.67 8.04 -51.93 -0.42 0.25 16 36 H 0.18 1.02 8.06 -52.49 -0.42 0.60 16 37 H 0.16 1.83 8.06 -52.48 -0.42 1.41 16 38 H 0.41 7.37 7.43 -40.82 -0.30 7.07 16 39 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 40 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 42 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 43 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 44 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 45 H 0.06 1.21 7.93 -51.93 -0.41 0.80 16 46 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 47 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 48 H 0.07 1.68 3.72 -51.93 -0.19 1.49 16 49 H 0.03 0.56 7.07 -51.93 -0.37 0.20 16 LS Contribution 394.52 15.07 5.95 5.95 Total: -1.00 -34.57 394.52 -7.22 -41.78 By element: Atomic # 1 Polarization: 13.41 SS G_CDS: -8.07 Total: 5.34 kcal Atomic # 6 Polarization: 5.51 SS G_CDS: -0.81 Total: 4.70 kcal Atomic # 7 Polarization: -61.53 SS G_CDS: 0.14 Total: -61.39 kcal Atomic # 8 Polarization: -14.72 SS G_CDS: -0.29 Total: -15.01 kcal Atomic # 14 Polarization: 22.76 SS G_CDS: -4.14 Total: 18.62 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -34.57 -7.22 -41.78 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275982961.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.696 kcal (2) G-P(sol) polarization free energy of solvation -34.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.783 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds