Wall clock time and date at job start Tue Mar 31 2020 19:17:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42891 * 114.00412 * 2 1 4 4 C 1.52998 * 109.47647 * 180.02562 * 3 2 1 5 5 N 1.46499 * 109.47290 * 180.02562 * 4 3 2 6 6 C 1.35042 * 124.88390 * 124.97505 * 5 4 3 7 7 C 1.35366 * 107.22430 * 179.72424 * 6 5 4 8 8 C 1.41500 * 105.50347 * 0.41237 * 7 6 5 9 9 C 1.47717 * 126.51423 * 179.84383 * 8 7 6 10 10 O 1.21571 * 119.99995 * 359.71164 * 9 8 7 11 11 N 1.34777 * 119.99478 * 179.71520 * 9 8 7 12 12 C 1.46507 * 119.99502 * 179.97438 * 11 9 8 13 13 C 1.53001 * 109.46949 * 179.97438 * 12 11 9 14 14 H 1.08998 * 109.51975 * 54.92188 * 13 12 11 15 15 C 1.53040 * 109.49747 * 174.99934 * 13 12 11 16 16 C 1.53037 * 109.52613 * 181.31207 * 15 13 12 17 17 C 1.53191 * 109.31196 * 298.64307 * 16 15 13 18 18 N 1.46926 * 108.77877 * 54.63626 * 17 16 15 19 19 C 1.36939 * 120.63312 * 126.41026 * 18 17 16 20 20 H 1.08006 * 119.99643 * 332.56741 * 19 18 17 21 21 C 1.38810 * 120.00240 * 152.56257 * 19 18 17 22 22 N 1.31614 * 119.99902 * 159.28584 * 21 19 18 23 23 Si 1.86796 * 119.99889 * 339.29367 * 21 19 18 24 24 H 1.48498 * 109.47390 * 92.94164 * 23 21 19 25 25 H 1.48501 * 109.47116 * 212.94243 * 23 21 19 26 26 H 1.48504 * 109.47242 * 332.94177 * 23 21 19 27 27 C 1.46922 * 118.73478 * 306.39146 * 18 17 16 28 28 N 1.28465 * 124.88679 * 304.97248 * 5 4 3 29 29 H 1.09001 * 109.47533 * 300.00148 * 1 2 3 30 30 H 1.09003 * 109.47159 * 60.00248 * 1 2 3 31 31 H 1.09003 * 109.47305 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47316 * 59.99550 * 3 2 1 33 33 H 1.09006 * 109.47179 * 299.99850 * 3 2 1 34 34 H 1.09001 * 109.47208 * 59.99388 * 4 3 2 35 35 H 1.09006 * 109.46631 * 300.00090 * 4 3 2 36 36 H 1.07997 * 126.38603 * 359.97438 * 6 5 4 37 37 H 1.08007 * 127.24416 * 180.25860 * 7 6 5 38 38 H 0.96999 * 120.00640 * 359.97438 * 11 9 8 39 39 H 1.09001 * 109.46884 * 60.00267 * 12 11 9 40 40 H 1.08994 * 109.47126 * 299.99794 * 12 11 9 41 41 H 1.08997 * 109.45639 * 61.30129 * 15 13 12 42 42 H 1.08998 * 109.45780 * 301.32845 * 15 13 12 43 43 H 1.08996 * 109.49961 * 58.59706 * 16 15 13 44 44 H 1.09000 * 109.49502 * 178.69510 * 16 15 13 45 45 H 1.09005 * 109.58874 * 174.42419 * 17 16 15 46 46 H 1.09004 * 109.58874 * 294.70299 * 17 16 15 47 47 H 0.97006 * 119.99827 * 179.97438 * 22 21 19 48 48 H 1.09007 * 109.58531 * 173.39369 * 27 18 17 49 49 H 1.08993 * 109.59216 * 293.67350 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3053 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 4.1313 2.5229 0.0000 6 6 5.0259 2.9696 0.9076 7 6 5.3400 4.2418 0.5683 8 6 4.5729 4.5257 -0.5864 9 6 4.5585 5.7949 -1.3419 10 8 5.2511 6.7260 -0.9794 11 7 3.7773 5.9207 -2.4330 12 6 3.7625 7.1798 -3.1820 13 6 2.8009 7.0577 -4.3657 14 1 1.8178 6.7534 -4.0065 15 6 2.6897 8.4093 -5.0750 16 6 1.7030 8.2963 -6.2393 17 6 2.2218 7.2635 -7.2447 18 7 2.4694 5.9990 -6.5387 19 6 1.9069 4.8314 -6.9808 20 1 0.9762 4.8538 -7.5284 21 6 2.5328 3.6190 -6.7252 22 7 1.8419 2.4997 -6.7687 23 14 4.3556 3.5764 -6.3191 24 1 4.5359 3.6254 -4.8459 25 1 4.9516 2.3238 -6.8493 26 1 5.0284 4.7459 -6.9394 27 6 3.3323 6.0111 -5.3497 28 7 3.8781 3.4403 -0.8628 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.6886 1.8463 0.8899 33 1 1.6887 1.8463 -0.8900 34 1 3.8567 0.6437 -0.8908 35 1 3.8574 0.6434 0.8892 36 1 5.4204 2.4139 1.7454 37 1 6.0291 4.9021 1.0740 38 1 3.2249 5.1778 -2.7224 39 1 4.7657 7.3954 -3.5500 40 1 3.4339 7.9876 -2.5282 41 1 3.6685 8.7012 -5.4555 42 1 2.3351 9.1611 -4.3700 43 1 0.7302 7.9804 -5.8625 44 1 1.6066 9.2649 -6.7297 45 1 1.4769 7.1067 -8.0249 46 1 3.1490 7.6225 -7.6917 47 1 2.2794 1.6524 -6.5905 48 1 3.3200 5.0278 -4.8793 49 1 4.3518 6.2642 -5.6405 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000275982961.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:17:06 Heat of formation + Delta-G solvation = -5.531066 kcal Electronic energy + Delta-G solvation = -29800.068891 eV Core-core repulsion = 25763.782496 eV Total energy + Delta-G solvation = -4036.286396 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -43.73085 -40.74309 -39.51879 -39.03044 -36.28138 -35.06665 -34.82073 -32.94602 -32.24954 -31.65534 -30.54635 -27.79912 -27.22169 -26.97716 -25.20525 -24.14419 -23.24289 -22.46181 -22.31816 -21.25236 -20.64117 -19.04236 -18.82722 -18.05756 -17.53978 -17.30289 -17.10371 -16.96667 -16.73887 -16.31385 -15.92920 -15.66663 -15.46079 -15.19690 -15.01715 -14.85274 -14.69774 -14.54192 -14.30056 -14.05660 -13.89872 -13.64071 -13.39795 -13.10372 -13.05464 -12.68414 -12.61087 -12.38639 -12.22927 -12.11917 -11.92052 -11.71614 -11.63788 -11.50828 -11.28579 -11.17934 -10.82844 -10.68796 -10.44066 -10.20295 -10.04362 -8.94403 -8.20896 -5.50415 0.43600 1.14283 1.23888 1.28288 1.33332 1.40730 2.11698 2.30324 2.35079 2.73330 3.00344 3.30259 3.35142 3.68861 3.76455 3.81343 3.90503 3.92655 3.97032 4.08153 4.16098 4.30340 4.39515 4.43736 4.45497 4.47469 4.55862 4.58695 4.61967 4.68062 4.71581 4.73116 4.76072 4.79845 4.88195 4.97339 5.09328 5.17266 5.22820 5.27446 5.30018 5.38969 5.58742 5.78439 5.84704 5.96174 6.09935 6.30262 6.79992 6.89550 7.05603 7.60286 8.01669 8.98783 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.008988 B = 0.004012 C = 0.003223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3114.573339 B = 6977.666553 C = 8685.114088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.401 6.401 3 C 0.053 3.947 4 C 0.121 3.879 5 N -0.279 5.279 6 C 0.011 3.989 7 C -0.196 4.196 8 C -0.046 4.046 9 C 0.600 3.400 10 O -0.565 6.565 11 N -0.716 5.716 12 C 0.130 3.870 13 C -0.106 4.106 14 H 0.071 0.929 15 C -0.098 4.098 16 C -0.124 4.124 17 C 0.137 3.863 18 N -0.620 5.620 19 C -0.245 4.245 20 H 0.057 0.943 21 C -0.024 4.024 22 N -0.950 5.950 23 Si 0.935 3.065 24 H -0.280 1.280 25 H -0.313 1.313 26 H -0.268 1.268 27 C 0.132 3.868 28 N -0.290 5.290 29 H 0.058 0.942 30 H 0.036 0.964 31 H 0.107 0.893 32 H 0.068 0.932 33 H 0.041 0.959 34 H 0.097 0.903 35 H 0.158 0.842 36 H 0.236 0.764 37 H 0.174 0.826 38 H 0.406 0.594 39 H 0.065 0.935 40 H 0.087 0.913 41 H 0.068 0.932 42 H 0.087 0.913 43 H 0.052 0.948 44 H 0.092 0.908 45 H 0.054 0.946 46 H 0.033 0.967 47 H 0.260 0.740 48 H 0.045 0.955 49 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.428 1.392 18.914 19.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.319 6.319 3 C -0.025 4.025 4 C 0.001 3.999 5 N -0.068 5.068 6 C -0.131 4.131 7 C -0.224 4.224 8 C -0.205 4.205 9 C 0.386 3.614 10 O -0.443 6.443 11 N -0.366 5.366 12 C 0.006 3.994 13 C -0.126 4.126 14 H 0.090 0.910 15 C -0.136 4.136 16 C -0.163 4.163 17 C 0.012 3.988 18 N -0.345 5.345 19 C -0.375 4.375 20 H 0.075 0.925 21 C -0.220 4.220 22 N -0.596 5.596 23 Si 0.766 3.234 24 H -0.207 1.207 25 H -0.242 1.242 26 H -0.193 1.193 27 C 0.007 3.993 28 N -0.127 5.127 29 H 0.076 0.924 30 H 0.055 0.945 31 H 0.125 0.875 32 H 0.086 0.914 33 H 0.060 0.940 34 H 0.115 0.885 35 H 0.175 0.825 36 H 0.253 0.747 37 H 0.191 0.809 38 H 0.241 0.759 39 H 0.084 0.916 40 H 0.105 0.895 41 H 0.087 0.913 42 H 0.106 0.894 43 H 0.071 0.929 44 H 0.110 0.890 45 H 0.073 0.927 46 H 0.051 0.949 47 H 0.069 0.931 48 H 0.063 0.937 49 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 2.171 1.197 18.361 18.527 hybrid contribution 0.742 -0.492 -0.029 0.891 sum 2.914 0.705 18.332 18.576 Atomic orbital electron populations 1.22972 0.78772 1.04390 1.00773 1.87731 1.21906 1.26651 1.95654 1.22563 0.92871 0.85566 1.01519 1.21975 0.92448 0.77350 1.08088 1.45653 1.31128 1.11654 1.18405 1.23623 0.95619 0.95692 0.98138 1.22046 1.04904 0.97593 0.97820 1.22010 1.03624 0.93797 1.01055 1.17180 0.79078 0.85447 0.79734 1.90724 1.43662 1.40461 1.69478 1.46084 1.45028 1.17652 1.27857 1.21516 1.00033 0.85396 0.92420 1.21792 0.98756 0.98028 0.94045 0.91025 1.21382 1.00267 0.94488 0.97416 1.21890 0.98520 0.99241 0.96660 1.21202 0.98312 0.85099 0.94158 1.44507 1.57307 1.04756 1.27894 1.18902 1.02312 0.84112 1.32153 0.92531 1.25729 1.00576 0.94995 1.00652 1.69939 1.36517 0.98422 1.54738 0.86095 0.84036 0.75762 0.77542 1.20689 1.24218 1.19340 1.21337 0.92664 0.97683 0.87654 1.73554 1.23753 0.98395 1.16990 0.92357 0.94478 0.87462 0.91397 0.94020 0.88466 0.82462 0.74732 0.80867 0.75904 0.91638 0.89483 0.91337 0.89446 0.92880 0.89005 0.92701 0.94935 0.93056 0.93664 0.95935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 11.01 113.37 1.25 1.69 16 2 O -0.40 -8.30 10.70 -148.98 -1.59 -9.89 16 3 C 0.05 1.05 6.04 71.98 0.43 1.49 16 4 C 0.12 2.02 6.77 86.38 0.58 2.60 16 5 N -0.28 -6.20 3.41 -347.94 -1.19 -7.39 16 6 C 0.01 0.19 11.40 83.54 0.95 1.15 16 7 C -0.20 -4.68 10.81 22.41 0.24 -4.44 16 8 C -0.05 -1.46 7.13 42.46 0.30 -1.15 16 9 C 0.60 21.35 7.83 86.75 0.68 22.03 16 10 O -0.57 -21.87 16.93 -3.94 -0.07 -21.94 16 11 N -0.72 -24.95 5.33 -466.08 -2.48 -27.43 16 12 C 0.13 4.06 5.07 86.38 0.44 4.49 16 13 C -0.11 -3.53 2.37 -10.73 -0.03 -3.55 16 14 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 15 C -0.10 -2.64 5.17 30.62 0.16 -2.48 16 16 C -0.12 -3.62 6.08 30.67 0.19 -3.43 16 17 C 0.14 5.18 6.52 86.36 0.56 5.74 16 18 N -0.62 -29.36 2.77 -699.15 -1.94 -31.30 16 19 C -0.25 -14.01 10.03 84.03 0.84 -13.17 16 20 H 0.06 3.50 8.06 -2.91 -0.02 3.48 16 21 C -0.02 -1.44 5.23 84.86 0.44 -1.00 16 22 N -0.95 -59.98 13.97 21.65 0.30 -59.68 16 23 Si 0.94 48.65 24.35 68.60 1.67 50.32 16 24 H -0.28 -14.14 6.62 99.48 0.66 -13.48 16 25 H -0.31 -16.58 7.11 99.48 0.71 -15.87 16 26 H -0.27 -13.62 6.64 99.48 0.66 -12.96 16 27 C 0.13 5.67 3.29 86.35 0.28 5.95 16 28 N -0.29 -9.03 11.36 -48.18 -0.55 -9.58 16 29 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.04 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.11 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.04 1.09 8.08 -2.38 -0.02 1.07 16 34 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 35 H 0.16 1.20 8.04 -2.38 -0.02 1.19 16 36 H 0.24 1.27 8.06 -2.91 -0.02 1.24 16 37 H 0.17 3.61 8.06 -2.91 -0.02 3.59 16 38 H 0.41 15.03 7.43 -92.71 -0.69 14.34 16 39 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 40 H 0.09 2.41 8.14 -2.39 -0.02 2.40 16 41 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 42 H 0.09 1.88 8.14 -2.39 -0.02 1.87 16 43 H 0.05 1.65 8.14 -2.39 -0.02 1.64 16 44 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 45 H 0.05 2.12 7.93 -2.38 -0.02 2.10 16 46 H 0.03 1.18 8.14 -2.38 -0.02 1.16 16 47 H 0.26 15.73 8.31 -92.70 -0.77 14.96 16 48 H 0.05 2.18 3.72 -2.38 -0.01 2.17 16 49 H 0.02 0.99 7.07 -2.39 -0.02 0.97 16 Total: -1.00 -78.62 394.52 1.66 -76.96 By element: Atomic # 1 Polarization: 23.84 SS G_CDS: 0.16 Total: 24.00 kcal Atomic # 6 Polarization: 8.59 SS G_CDS: 7.33 Total: 15.93 kcal Atomic # 7 Polarization: -129.52 SS G_CDS: -5.85 Total: -135.37 kcal Atomic # 8 Polarization: -30.17 SS G_CDS: -1.66 Total: -31.83 kcal Atomic # 14 Polarization: 48.65 SS G_CDS: 1.67 Total: 50.32 kcal Total: -78.62 1.66 -76.96 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275982961.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.429 kcal (2) G-P(sol) polarization free energy of solvation -78.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds