Wall clock time and date at job start Tue Mar 31 2020 19:17:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42902 * 113.99578 * 2 1 4 4 C 1.52996 * 109.47000 * 180.02562 * 3 2 1 5 5 N 1.46505 * 109.47245 * 180.02562 * 4 3 2 6 6 C 1.35034 * 124.88887 * 125.00277 * 5 4 3 7 7 C 1.35358 * 107.22872 * 180.02562 * 6 5 4 8 8 C 1.41499 * 105.50612 * 359.97438 * 7 6 5 9 9 C 1.47708 * 126.51970 * 179.97438 * 8 7 6 10 10 O 1.21574 * 120.00141 * 0.02562 * 9 8 7 11 11 N 1.34781 * 120.00041 * 179.97438 * 9 8 7 12 12 C 1.46504 * 120.00110 * 180.02562 * 11 9 8 13 13 C 1.53000 * 109.47125 * 180.02562 * 12 11 9 14 14 H 1.09002 * 109.49574 * 305.06055 * 13 12 11 15 15 C 1.53032 * 109.49728 * 184.99820 * 13 12 11 16 16 C 1.53043 * 109.53877 * 178.65027 * 15 13 12 17 17 C 1.53186 * 109.31437 * 61.36566 * 16 15 13 18 18 N 1.46927 * 108.77479 * 305.36434 * 17 16 15 19 19 C 1.36936 * 120.63328 * 233.58439 * 18 17 16 20 20 H 1.08004 * 119.99687 * 151.83020 * 19 18 17 21 21 C 1.38804 * 119.99782 * 331.83092 * 19 18 17 22 22 N 1.31622 * 120.00247 * 343.08514 * 21 19 18 23 23 Si 1.86810 * 119.99877 * 163.08468 * 21 19 18 24 24 H 1.48499 * 109.47137 * 59.99982 * 23 21 19 25 25 H 1.48496 * 109.47053 * 180.02562 * 23 21 19 26 26 H 1.48499 * 109.46625 * 300.00079 * 23 21 19 27 27 C 1.46933 * 118.73465 * 53.86032 * 18 17 16 28 28 N 1.28469 * 124.87926 * 305.32801 * 5 4 3 29 29 H 1.08998 * 109.46933 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47189 * 299.99506 * 1 2 3 31 31 H 1.08999 * 109.47831 * 59.99730 * 1 2 3 32 32 H 1.09004 * 109.47110 * 60.00347 * 3 2 1 33 33 H 1.08999 * 109.47405 * 300.00725 * 3 2 1 34 34 H 1.08998 * 109.47333 * 60.00442 * 4 3 2 35 35 H 1.09001 * 109.47292 * 299.99803 * 4 3 2 36 36 H 1.07997 * 126.38199 * 0.02562 * 6 5 4 37 37 H 1.08005 * 127.24632 * 179.97438 * 7 6 5 38 38 H 0.96996 * 120.00070 * 0.02562 * 11 9 8 39 39 H 1.09001 * 109.47208 * 59.99760 * 12 11 9 40 40 H 1.09005 * 109.46873 * 299.99900 * 12 11 9 41 41 H 1.09003 * 109.46153 * 58.62865 * 15 13 12 42 42 H 1.08997 * 109.44923 * 298.66376 * 15 13 12 43 43 H 1.08996 * 109.49433 * 301.41091 * 16 15 13 44 44 H 1.09007 * 109.52229 * 181.32916 * 16 15 13 45 45 H 1.09001 * 109.59236 * 185.57892 * 17 16 15 46 46 H 1.09008 * 109.70642 * 65.21545 * 17 16 15 47 47 H 0.97001 * 120.00021 * 180.02562 * 22 21 19 48 48 H 1.08998 * 109.58974 * 65.93163 * 27 18 17 49 49 H 1.09003 * 109.58500 * 186.35202 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5353 1.1848 -0.0006 5 7 4.1312 2.5232 0.0000 6 6 5.0261 2.9698 0.9072 7 6 5.3349 4.2443 0.5719 8 6 4.5721 4.5263 -0.5861 9 6 4.5564 5.7959 -1.3408 10 8 5.2483 6.7273 -0.9779 11 7 3.7758 5.9214 -2.4323 12 6 3.7607 7.1805 -3.1812 13 6 2.7988 7.0584 -4.3648 14 1 3.0749 6.1951 -4.9703 15 6 2.8755 8.3264 -5.2182 16 6 1.9386 8.1913 -6.4208 17 6 0.4983 8.0284 -5.9253 18 7 0.4454 6.8972 -4.9892 19 6 -0.4474 5.8762 -5.1783 20 1 -0.2172 4.8842 -4.8186 21 6 -1.6480 6.1164 -5.8321 22 7 -2.0845 7.3499 -5.9747 23 14 -2.6443 4.6888 -6.5098 24 1 -3.0165 3.7743 -5.4007 25 1 -3.8752 5.2080 -7.1583 26 1 -1.8327 3.9495 -7.5098 27 6 1.3644 6.8854 -3.8428 28 7 3.8729 3.4427 -0.8592 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3635 0.5138 -0.8899 32 1 1.6885 1.8464 0.8900 33 1 1.6884 1.8465 -0.8899 34 1 3.8567 0.6441 -0.8909 35 1 3.8574 0.6438 0.8891 36 1 5.4216 2.4138 1.7443 37 1 6.0195 4.9067 1.0810 38 1 3.2240 5.1782 -2.7221 39 1 4.7638 7.3968 -3.5486 40 1 3.4311 7.9881 -2.5275 41 1 3.8980 8.4671 -5.5684 42 1 2.5754 9.1859 -4.6188 43 1 2.2228 7.3174 -7.0069 44 1 2.0111 9.0848 -7.0411 45 1 -0.1596 7.8330 -6.7721 46 1 0.1793 8.9385 -5.4170 47 1 -2.9237 7.5177 -6.4313 48 1 1.1170 7.7045 -3.1676 49 1 1.2782 5.9355 -3.3152 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000275982963.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:17:11 Heat of formation + Delta-G solvation = -8.642495 kcal Electronic energy + Delta-G solvation = -29175.761113 eV Core-core repulsion = 25139.339795 eV Total energy + Delta-G solvation = -4036.421317 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -43.67348 -40.63456 -39.29430 -38.99446 -36.27903 -35.01450 -34.64513 -32.32738 -32.18207 -31.54061 -30.46486 -27.67501 -27.24953 -26.83721 -25.05684 -23.83970 -23.26084 -22.42147 -22.32607 -21.15136 -20.47002 -18.99434 -18.60217 -17.96402 -17.44176 -17.06009 -16.96685 -16.82130 -16.64238 -16.35382 -15.85731 -15.59682 -15.34398 -15.11885 -14.95092 -14.73367 -14.51536 -14.26646 -14.09342 -13.92051 -13.73079 -13.58758 -13.04004 -13.01002 -12.86702 -12.64481 -12.49805 -12.36466 -12.31923 -11.99246 -11.89456 -11.83476 -11.59945 -11.46578 -11.15278 -11.07272 -10.80629 -10.53506 -10.37159 -10.13988 -9.97493 -8.68029 -7.87490 -5.33881 0.49612 1.17698 1.34042 1.44898 1.48006 1.54633 2.17900 2.36563 2.50061 2.76294 3.26823 3.38958 3.58415 3.75591 3.81578 3.97730 3.98594 3.99940 4.05275 4.14880 4.21708 4.41196 4.42189 4.46467 4.55772 4.60128 4.60643 4.66162 4.73782 4.75784 4.78583 4.81679 4.87393 4.89037 5.00845 5.10414 5.21374 5.31412 5.33149 5.38374 5.46240 5.55854 5.65877 5.78399 5.81868 5.98011 6.37721 6.41706 6.86888 7.13795 7.14379 7.85383 8.37811 9.18402 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.007996 B = 0.003537 C = 0.002515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3500.991636 B = 7914.739186 C =11132.053046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.399 6.399 3 C 0.050 3.950 4 C 0.124 3.876 5 N -0.278 5.278 6 C 0.010 3.990 7 C -0.199 4.199 8 C -0.041 4.041 9 C 0.600 3.400 10 O -0.571 6.571 11 N -0.708 5.708 12 C 0.136 3.864 13 C -0.100 4.100 14 H 0.073 0.927 15 C -0.096 4.096 16 C -0.130 4.130 17 C 0.173 3.827 18 N -0.609 5.609 19 C -0.264 4.264 20 H 0.066 0.934 21 C -0.049 4.049 22 N -0.935 5.935 23 Si 0.966 3.034 24 H -0.275 1.275 25 H -0.294 1.294 26 H -0.278 1.278 27 C 0.154 3.846 28 N -0.281 5.281 29 H 0.107 0.893 30 H 0.052 0.948 31 H 0.039 0.961 32 H 0.059 0.941 33 H 0.048 0.952 34 H 0.108 0.892 35 H 0.152 0.848 36 H 0.233 0.767 37 H 0.169 0.831 38 H 0.410 0.590 39 H 0.078 0.922 40 H 0.062 0.938 41 H 0.082 0.918 42 H 0.057 0.943 43 H 0.052 0.948 44 H 0.071 0.929 45 H 0.052 0.948 46 H -0.006 1.006 47 H 0.250 0.750 48 H 0.007 0.993 49 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.828 -13.391 13.791 23.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.317 6.317 3 C -0.028 4.028 4 C 0.005 3.995 5 N -0.068 5.068 6 C -0.132 4.132 7 C -0.227 4.227 8 C -0.200 4.200 9 C 0.385 3.615 10 O -0.449 6.449 11 N -0.359 5.359 12 C 0.012 3.988 13 C -0.120 4.120 14 H 0.092 0.908 15 C -0.134 4.134 16 C -0.169 4.169 17 C 0.047 3.953 18 N -0.332 5.332 19 C -0.394 4.394 20 H 0.083 0.917 21 C -0.244 4.244 22 N -0.581 5.581 23 Si 0.794 3.206 24 H -0.201 1.201 25 H -0.220 1.220 26 H -0.204 1.204 27 C 0.028 3.972 28 N -0.118 5.118 29 H 0.126 0.874 30 H 0.070 0.930 31 H 0.058 0.942 32 H 0.077 0.923 33 H 0.066 0.934 34 H 0.126 0.874 35 H 0.170 0.830 36 H 0.249 0.751 37 H 0.187 0.813 38 H 0.246 0.754 39 H 0.097 0.903 40 H 0.080 0.920 41 H 0.101 0.899 42 H 0.076 0.924 43 H 0.071 0.929 44 H 0.090 0.910 45 H 0.070 0.930 46 H 0.012 0.988 47 H 0.059 0.941 48 H 0.025 0.975 49 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 13.411 -13.400 13.200 23.101 hybrid contribution -1.101 -0.001 -0.127 1.108 sum 12.310 -13.401 13.074 22.406 Atomic orbital electron populations 1.22955 0.78943 1.04312 1.00711 1.87727 1.21643 1.26680 1.95658 1.22602 0.93184 0.85486 1.01538 1.21958 0.91958 0.77249 1.08360 1.45651 1.30802 1.11621 1.18698 1.23556 0.95914 0.95635 0.98137 1.22034 1.05214 0.97521 0.97947 1.21912 1.03339 0.93835 1.00941 1.17194 0.79131 0.85389 0.79760 1.90743 1.44158 1.40670 1.69354 1.45939 1.44798 1.17320 1.27801 1.21382 0.99763 0.85261 0.92372 1.21788 0.94751 0.99798 0.95703 0.90830 1.21337 0.99844 0.96192 0.96040 1.21998 0.96221 1.00992 0.97668 1.20645 0.93815 0.87916 0.92897 1.44309 1.40062 1.23371 1.25474 1.19465 0.96151 0.89258 1.34570 0.91680 1.25792 0.97341 0.98397 1.02896 1.70190 1.21423 1.20243 1.46233 0.85373 0.77619 0.79123 0.78535 1.20069 1.22008 1.20359 1.21077 0.89121 0.98117 0.88883 1.73496 1.22845 0.98193 1.17263 0.87433 0.92973 0.94236 0.92294 0.93403 0.87363 0.83042 0.75097 0.81341 0.75396 0.90350 0.91983 0.89926 0.92398 0.92942 0.91010 0.92981 0.98814 0.94120 0.97501 0.93271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 11.01 113.37 1.25 1.63 16 2 O -0.40 -6.73 10.70 -148.98 -1.59 -8.32 16 3 C 0.05 0.80 6.04 71.98 0.43 1.23 16 4 C 0.12 1.42 6.77 86.38 0.58 2.00 16 5 N -0.28 -4.82 3.41 -347.95 -1.19 -6.01 16 6 C 0.01 0.13 11.40 83.54 0.95 1.09 16 7 C -0.20 -4.18 10.81 22.41 0.24 -3.94 16 8 C -0.04 -1.13 7.13 42.45 0.30 -0.83 16 9 C 0.60 19.20 7.83 86.75 0.68 19.88 16 10 O -0.57 -21.10 16.93 -3.95 -0.07 -21.16 16 11 N -0.71 -21.47 5.33 -466.08 -2.48 -23.96 16 12 C 0.14 4.07 5.07 86.38 0.44 4.50 16 13 C -0.10 -3.31 2.38 -10.57 -0.03 -3.34 16 14 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 15 C -0.10 -3.04 5.16 30.62 0.16 -2.88 16 16 C -0.13 -4.82 6.08 30.67 0.19 -4.63 16 17 C 0.17 8.45 5.30 86.36 0.46 8.91 16 18 N -0.61 -30.92 2.99 -698.24 -2.09 -33.01 16 19 C -0.26 -14.64 9.58 84.03 0.81 -13.83 16 20 H 0.07 3.50 7.89 -2.91 -0.02 3.48 16 21 C -0.05 -2.74 4.92 84.86 0.42 -2.32 16 22 N -0.93 -55.85 11.20 21.65 0.24 -55.61 16 23 Si 0.97 44.85 29.59 68.60 2.03 46.88 16 24 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 25 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 26 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 27 C 0.15 6.45 5.63 86.51 0.49 6.94 16 28 N -0.28 -7.07 11.35 -48.18 -0.55 -7.61 16 29 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.04 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.06 0.92 8.14 -2.38 -0.02 0.90 16 33 H 0.05 1.00 8.08 -2.39 -0.02 0.98 16 34 H 0.11 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.15 0.57 8.04 -2.39 -0.02 0.55 16 36 H 0.23 0.66 8.06 -2.91 -0.02 0.64 16 37 H 0.17 3.19 8.06 -2.91 -0.02 3.17 16 38 H 0.41 12.24 7.45 -92.71 -0.69 11.55 16 39 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 40 H 0.06 1.95 8.14 -2.38 -0.02 1.94 16 41 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 42 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 43 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 44 H 0.07 2.35 8.14 -2.38 -0.02 2.33 16 45 H 0.05 2.88 6.06 -2.39 -0.01 2.86 16 46 H -0.01 -0.33 8.14 -2.38 -0.02 -0.35 16 47 H 0.25 14.47 8.31 -92.71 -0.77 13.70 16 48 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 49 H 0.05 2.03 7.16 -2.39 -0.02 2.02 16 Total: -1.00 -74.59 401.00 1.92 -72.67 By element: Atomic # 1 Polarization: 21.47 SS G_CDS: 0.25 Total: 21.71 kcal Atomic # 6 Polarization: 7.05 SS G_CDS: 7.37 Total: 14.42 kcal Atomic # 7 Polarization: -120.13 SS G_CDS: -6.06 Total: -126.19 kcal Atomic # 8 Polarization: -27.83 SS G_CDS: -1.66 Total: -29.49 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.88 kcal Total: -74.59 1.92 -72.67 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275982963.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.027 kcal (2) G-P(sol) polarization free energy of solvation -74.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds