Wall clock time and date at job start Tue Mar 31 2020 20:24:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52992 * 109.47162 * 2 1 4 4 N 1.46493 * 109.47401 * 120.00399 * 2 1 3 5 5 C 1.30176 * 120.00127 * 126.93129 * 4 2 1 6 6 N 1.37893 * 119.99901 * 6.24122 * 5 4 2 7 7 H 0.97004 * 120.00241 * 359.97438 * 6 5 4 8 8 C 1.37898 * 120.00138 * 179.97438 * 6 5 4 9 9 N 1.30165 * 120.00280 * 180.02562 * 8 6 5 10 10 C 1.46504 * 120.00260 * 186.13594 * 9 8 6 11 11 C 1.52997 * 109.47474 * 120.19108 * 10 9 8 12 12 O 1.42899 * 109.47223 * 64.99886 * 11 10 9 13 13 N 1.37898 * 119.99766 * 359.79153 * 8 6 5 14 14 H 0.96998 * 119.99964 * 180.23474 * 13 8 6 15 15 C 1.37890 * 120.00100 * 0.43458 * 13 8 6 16 16 N 1.30173 * 120.00705 * 179.81659 * 15 13 8 17 17 C 1.46506 * 119.99292 * 5.94787 * 16 15 13 18 18 C 1.52996 * 109.47309 * 245.38616 * 17 16 15 19 19 C 1.50696 * 115.54764 * 329.91939 * 18 17 16 20 20 H 1.08001 * 119.99845 * 90.24824 * 19 18 17 21 21 C 1.37878 * 120.00308 * 270.23947 * 19 18 17 22 22 N 1.31516 * 119.99340 * 5.46904 * 21 19 18 23 23 Si 1.86794 * 120.00301 * 185.46134 * 21 19 18 24 24 H 1.48497 * 109.47080 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.46963 * 120.00526 * 23 21 19 26 26 H 1.48500 * 109.47190 * 240.00274 * 23 21 19 27 27 C 1.52996 * 117.50019 * 184.24471 * 18 17 16 28 28 C 1.52996 * 60.03537 * 252.48058 * 27 18 17 29 29 N 1.37893 * 120.00023 * 186.21423 * 5 4 2 30 30 H 0.97000 * 120.00442 * 0.02562 * 29 5 4 31 31 H 1.08998 * 109.46474 * 299.99749 * 1 2 3 32 32 H 1.08994 * 109.47073 * 59.99744 * 1 2 3 33 33 H 1.09006 * 109.46935 * 179.97438 * 1 2 3 34 34 H 1.09002 * 109.46949 * 240.00334 * 2 1 3 35 35 H 1.09004 * 109.47427 * 300.00043 * 3 2 1 36 36 H 1.09002 * 109.46916 * 60.00314 * 3 2 1 37 37 H 1.09005 * 109.47424 * 180.02562 * 3 2 1 38 38 H 1.09005 * 109.46407 * 240.19216 * 10 9 8 39 39 H 1.08994 * 109.46900 * 0.18612 * 10 9 8 40 40 H 1.08999 * 109.46911 * 184.99933 * 11 10 9 41 41 H 1.09002 * 109.46815 * 305.00195 * 11 10 9 42 42 H 0.96701 * 113.99679 * 180.02562 * 12 11 10 43 43 H 1.09003 * 109.47066 * 125.38401 * 17 16 15 44 44 H 1.09005 * 109.46914 * 5.39187 * 17 16 15 45 45 H 0.97007 * 119.99575 * 174.99670 * 22 21 19 46 46 H 1.09004 * 117.49746 * 359.97438 * 27 18 17 47 47 H 1.08997 * 117.49903 * 144.97456 * 27 18 17 48 48 H 1.08996 * 117.50436 * 107.50063 * 28 27 18 49 49 H 1.09003 * 117.49700 * 252.52629 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0184 -0.6906 1.1960 5 6 2.8740 -1.6650 1.0813 6 7 3.4185 -1.9629 -0.1501 7 1 3.1638 -1.4467 -0.9308 8 6 4.3253 -2.9947 -0.2716 9 7 4.8397 -3.2756 -1.4338 10 6 5.6976 -4.4529 -1.5900 11 6 5.0822 -5.3991 -2.6229 12 8 5.0731 -4.7653 -3.9036 13 7 4.6908 -3.7257 0.8391 14 1 5.3312 -4.4493 0.7542 15 6 4.1428 -3.4308 2.0696 16 7 4.4850 -4.1232 3.1174 17 6 5.5466 -5.1278 3.0167 18 6 4.9561 -6.5193 3.2534 19 6 3.7623 -6.5711 4.1716 20 1 2.7654 -6.4769 3.7670 21 6 3.9428 -6.7390 5.5282 22 7 5.1567 -6.7460 6.0341 23 14 2.4632 -6.9562 6.6474 24 1 1.2192 -6.9115 5.8377 25 1 2.5552 -8.2661 7.3409 26 1 2.4389 -5.8641 7.6535 27 6 5.9262 -7.7018 3.2884 28 6 4.9957 -7.5121 2.0889 29 7 3.2363 -2.3988 2.1911 30 1 2.8533 -2.1892 3.0573 31 1 -0.3632 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 -0.3633 -1.0277 -0.0005 34 1 1.8933 -0.5138 -0.8900 35 1 1.6767 1.9563 -0.8900 36 1 1.6767 1.9562 0.8900 37 1 3.1301 1.4425 -0.0005 38 1 6.6859 -4.1400 -1.9271 39 1 5.7861 -4.9674 -0.6332 40 1 5.6722 -6.3141 -2.6744 41 1 4.0605 -5.6415 -2.3302 42 1 4.6953 -5.3088 -4.6086 43 1 6.3110 -4.9251 3.7669 44 1 5.9928 -5.0866 2.0231 45 1 5.2814 -6.7911 6.9950 46 1 6.9852 -7.4885 3.1424 47 1 5.7013 -8.5171 3.9759 48 1 5.4423 -7.1739 1.1538 49 1 4.1582 -8.2023 1.9875 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343046497.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:43 Heat of formation + Delta-G solvation = 94.403747 kcal Electronic energy + Delta-G solvation = -29934.035088 eV Core-core repulsion = 25934.374942 eV Total energy + Delta-G solvation = -3999.660146 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.17394 -38.09290 -37.46460 -36.66394 -36.13160 -34.83559 -33.04564 -31.89754 -31.74974 -30.73597 -28.79651 -27.25217 -26.53815 -25.24820 -23.62194 -22.54335 -21.26203 -21.08656 -20.79770 -20.09688 -19.28344 -18.58945 -17.72437 -17.07452 -16.70422 -16.21868 -15.85644 -15.58501 -15.20872 -14.62857 -14.49891 -14.35690 -14.09278 -13.90724 -13.72067 -13.58341 -12.92982 -12.84397 -12.81215 -12.43550 -12.26888 -12.20441 -12.19653 -11.64922 -11.52043 -11.46210 -11.31454 -10.93632 -10.86170 -10.52102 -10.25273 -10.15221 -9.82368 -9.76296 -9.53853 -9.11297 -8.73460 -8.64598 -8.60835 -8.38047 -8.15658 -7.60456 -5.97261 -3.99861 1.90244 2.06536 2.23892 2.78520 3.02750 3.32363 3.40845 3.44698 3.48066 4.15636 4.46047 4.49719 4.58639 4.84189 5.00782 5.07059 5.12248 5.13803 5.15632 5.19064 5.32806 5.35737 5.44051 5.51635 5.68657 5.71382 5.74365 5.79015 5.80015 5.90968 6.03064 6.05948 6.13149 6.22565 6.26502 6.45626 6.57233 6.58526 6.75812 6.85589 6.98996 7.13150 7.25729 7.44535 7.52948 7.55125 7.82362 7.94112 8.23855 8.39475 8.67297 8.96847 9.63691 11.12111 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.008641 B = 0.004044 C = 0.002973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3239.463213 B = 6921.458157 C = 9417.224225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.092 3.908 3 C -0.144 4.144 4 N -0.612 5.612 5 C 0.620 3.380 6 N -0.664 5.664 7 H 0.437 0.563 8 C 0.599 3.401 9 N -0.611 5.611 10 C 0.071 3.929 11 C 0.086 3.914 12 O -0.560 6.560 13 N -0.707 5.707 14 H 0.433 0.567 15 C 0.547 3.453 16 N -0.513 5.513 17 C 0.113 3.887 18 C 0.044 3.956 19 C -0.467 4.467 20 H 0.055 0.945 21 C 0.075 3.925 22 N -0.882 5.882 23 Si 0.889 3.111 24 H -0.275 1.275 25 H -0.287 1.287 26 H -0.284 1.284 27 C -0.147 4.147 28 C -0.220 4.220 29 N -0.616 5.616 30 H 0.449 0.551 31 H 0.064 0.936 32 H 0.058 0.942 33 H 0.053 0.947 34 H 0.039 0.961 35 H 0.059 0.941 36 H 0.065 0.935 37 H 0.051 0.949 38 H 0.085 0.915 39 H 0.046 0.954 40 H 0.051 0.949 41 H 0.044 0.956 42 H 0.372 0.628 43 H 0.087 0.913 44 H 0.000 1.000 45 H 0.257 0.743 46 H 0.062 0.938 47 H 0.086 0.914 48 H 0.056 0.944 49 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.066 9.028 -15.398 17.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.019 4.019 3 C -0.202 4.202 4 N -0.350 5.350 5 C 0.254 3.746 6 N -0.313 5.313 7 H 0.283 0.717 8 C 0.232 3.768 9 N -0.348 5.348 10 C -0.060 4.060 11 C 0.007 3.993 12 O -0.364 6.364 13 N -0.364 5.364 14 H 0.281 0.719 15 C 0.180 3.820 16 N -0.241 5.241 17 C -0.017 4.017 18 C 0.043 3.957 19 C -0.505 4.505 20 H 0.073 0.927 21 C -0.127 4.127 22 N -0.519 5.519 23 Si 0.717 3.283 24 H -0.199 1.199 25 H -0.213 1.213 26 H -0.210 1.210 27 C -0.185 4.185 28 C -0.257 4.257 29 N -0.261 5.261 30 H 0.293 0.707 31 H 0.083 0.917 32 H 0.077 0.923 33 H 0.072 0.928 34 H 0.056 0.944 35 H 0.078 0.922 36 H 0.084 0.916 37 H 0.070 0.930 38 H 0.104 0.896 39 H 0.064 0.936 40 H 0.069 0.931 41 H 0.062 0.938 42 H 0.218 0.782 43 H 0.105 0.895 44 H 0.018 0.982 45 H 0.067 0.933 46 H 0.080 0.920 47 H 0.104 0.896 48 H 0.074 0.926 49 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -2.232 9.984 -14.179 17.484 hybrid contribution -0.064 -1.556 -0.390 1.606 sum -2.296 8.427 -14.569 16.987 Atomic orbital electron populations 1.21754 0.93676 1.02054 1.01947 1.21202 0.96027 0.94573 0.90108 1.21888 1.00854 0.95277 1.02192 1.72556 1.20650 1.12676 1.29079 1.18993 0.88813 0.88209 0.78549 1.42572 1.43449 1.34503 1.10810 0.71742 1.19276 0.87870 0.85042 0.84597 1.72525 1.23595 1.21918 1.16726 1.21714 0.97274 0.90608 0.96413 1.22160 0.99390 0.93775 0.83947 1.86584 1.85798 1.45963 1.18021 1.44174 1.48260 1.38235 1.05713 0.71865 1.19029 0.90333 0.90104 0.82557 1.72463 1.18299 1.11453 1.21848 1.21573 0.91394 0.92679 0.96016 1.18941 0.97138 0.85096 0.94491 1.20109 0.90447 1.49244 0.90658 0.92653 1.24860 0.95368 0.94556 0.97931 1.69976 1.20161 1.50067 1.11737 0.86598 0.83369 0.77474 0.80875 1.19942 1.21342 1.21014 1.22494 0.93762 1.03555 0.98714 1.23171 1.03049 1.07474 0.92019 1.40733 1.44950 1.30329 1.10041 0.70696 0.91664 0.92260 0.92769 0.94361 0.92177 0.91624 0.92991 0.89645 0.93620 0.93079 0.93793 0.78176 0.89503 0.98233 0.93274 0.91960 0.89562 0.92561 0.90371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.29 9.52 37.16 0.35 -0.93 16 2 C 0.09 0.95 3.42 -67.94 -0.23 0.72 16 3 C -0.14 -1.31 9.52 37.15 0.35 -0.96 16 4 N -0.61 -7.88 10.21 -55.09 -0.56 -8.45 16 5 C 0.62 8.38 8.51 -319.12 -2.72 5.66 16 6 N -0.66 -8.35 5.32 -13.71 -0.07 -8.43 16 7 H 0.44 4.80 6.25 -40.82 -0.26 4.55 16 8 C 0.60 8.41 8.51 -319.12 -2.72 5.70 16 9 N -0.61 -8.57 10.56 -61.59 -0.65 -9.22 16 10 C 0.07 0.88 6.69 -4.04 -0.03 0.86 16 11 C 0.09 0.95 7.39 37.16 0.27 1.22 16 12 O -0.56 -6.36 13.61 -35.23 -0.48 -6.84 16 13 N -0.71 -10.60 5.18 -13.71 -0.07 -10.67 16 14 H 0.43 6.37 3.48 -40.82 -0.14 6.23 16 15 C 0.55 9.27 8.51 -319.11 -2.72 6.55 16 16 N -0.51 -10.41 9.71 -61.58 -0.60 -11.01 16 17 C 0.11 2.35 6.43 -4.04 -0.03 2.32 16 18 C 0.04 1.02 1.92 -155.63 -0.30 0.72 16 19 C -0.47 -12.30 7.97 -34.44 -0.27 -12.58 16 20 H 0.06 1.52 7.82 -52.49 -0.41 1.11 16 21 C 0.08 2.03 5.37 -17.82 -0.10 1.93 16 22 N -0.88 -24.38 12.68 55.43 0.70 -23.68 16 23 Si 0.89 21.21 29.54 -169.99 -5.02 16.19 16 24 H -0.27 -6.55 7.11 56.52 0.40 -6.14 16 25 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 26 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 27 C -0.15 -3.26 9.15 -26.73 -0.24 -3.50 16 28 C -0.22 -4.46 9.89 -26.69 -0.26 -4.72 16 29 N -0.62 -9.17 5.49 -13.71 -0.08 -9.25 16 30 H 0.45 6.48 8.93 -40.82 -0.36 6.12 16 31 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 34 H 0.04 0.37 5.52 -51.93 -0.29 0.08 16 35 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 36 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 37 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 38 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.05 0.55 5.39 -51.93 -0.28 0.27 16 40 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.04 0.51 8.14 -51.93 -0.42 0.08 16 42 H 0.37 2.46 9.12 45.56 0.42 2.87 16 43 H 0.09 1.95 8.14 -51.93 -0.42 1.53 16 44 H 0.00 0.00 5.21 -51.93 -0.27 -0.27 16 45 H 0.26 6.89 8.32 -40.82 -0.34 6.55 16 46 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 47 H 0.09 2.09 8.14 -51.93 -0.42 1.67 16 48 H 0.06 0.98 8.04 -51.93 -0.42 0.56 16 49 H 0.08 1.62 8.14 -51.93 -0.42 1.20 16 LS Contribution 400.34 15.07 6.03 6.03 Total: -1.00 -30.54 400.34 -16.07 -46.61 By element: Atomic # 1 Polarization: 22.37 SS G_CDS: -6.64 Total: 15.73 kcal Atomic # 6 Polarization: 11.62 SS G_CDS: -8.63 Total: 2.99 kcal Atomic # 7 Polarization: -79.37 SS G_CDS: -1.33 Total: -80.70 kcal Atomic # 8 Polarization: -6.36 SS G_CDS: -0.48 Total: -6.84 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -30.54 -16.07 -46.61 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343046497.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.010 kcal (2) G-P(sol) polarization free energy of solvation -30.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -16.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.606 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds