Wall clock time and date at job start Tue Mar 31 2020 20:24:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52992 * 109.47162 * 2 1 4 4 N 1.46493 * 109.47401 * 120.00399 * 2 1 3 5 5 C 1.30176 * 120.00127 * 126.93129 * 4 2 1 6 6 N 1.37893 * 119.99901 * 6.24122 * 5 4 2 7 7 H 0.97004 * 120.00241 * 359.97438 * 6 5 4 8 8 C 1.37898 * 120.00138 * 179.97438 * 6 5 4 9 9 N 1.30165 * 120.00280 * 180.02562 * 8 6 5 10 10 C 1.46504 * 120.00260 * 186.13594 * 9 8 6 11 11 C 1.52997 * 109.47474 * 120.19108 * 10 9 8 12 12 O 1.42899 * 109.47223 * 64.99886 * 11 10 9 13 13 N 1.37898 * 119.99766 * 359.79153 * 8 6 5 14 14 H 0.96998 * 119.99964 * 180.23474 * 13 8 6 15 15 C 1.37890 * 120.00100 * 0.43458 * 13 8 6 16 16 N 1.30173 * 120.00705 * 179.81659 * 15 13 8 17 17 C 1.46506 * 119.99292 * 5.94787 * 16 15 13 18 18 C 1.52996 * 109.47309 * 245.38616 * 17 16 15 19 19 C 1.50696 * 115.54764 * 329.91939 * 18 17 16 20 20 H 1.08001 * 119.99845 * 90.24824 * 19 18 17 21 21 C 1.37878 * 120.00308 * 270.23947 * 19 18 17 22 22 N 1.31516 * 119.99340 * 5.46904 * 21 19 18 23 23 Si 1.86794 * 120.00301 * 185.46134 * 21 19 18 24 24 H 1.48497 * 109.47080 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.46963 * 120.00526 * 23 21 19 26 26 H 1.48500 * 109.47190 * 240.00274 * 23 21 19 27 27 C 1.52996 * 117.50019 * 184.24471 * 18 17 16 28 28 C 1.52996 * 60.03537 * 252.48058 * 27 18 17 29 29 N 1.37893 * 120.00023 * 186.21423 * 5 4 2 30 30 H 0.97000 * 120.00442 * 0.02562 * 29 5 4 31 31 H 1.08998 * 109.46474 * 299.99749 * 1 2 3 32 32 H 1.08994 * 109.47073 * 59.99744 * 1 2 3 33 33 H 1.09006 * 109.46935 * 179.97438 * 1 2 3 34 34 H 1.09002 * 109.46949 * 240.00334 * 2 1 3 35 35 H 1.09004 * 109.47427 * 300.00043 * 3 2 1 36 36 H 1.09002 * 109.46916 * 60.00314 * 3 2 1 37 37 H 1.09005 * 109.47424 * 180.02562 * 3 2 1 38 38 H 1.09005 * 109.46407 * 240.19216 * 10 9 8 39 39 H 1.08994 * 109.46900 * 0.18612 * 10 9 8 40 40 H 1.08999 * 109.46911 * 184.99933 * 11 10 9 41 41 H 1.09002 * 109.46815 * 305.00195 * 11 10 9 42 42 H 0.96701 * 113.99679 * 180.02562 * 12 11 10 43 43 H 1.09003 * 109.47066 * 125.38401 * 17 16 15 44 44 H 1.09005 * 109.46914 * 5.39187 * 17 16 15 45 45 H 0.97007 * 119.99575 * 174.99670 * 22 21 19 46 46 H 1.09004 * 117.49746 * 359.97438 * 27 18 17 47 47 H 1.08997 * 117.49903 * 144.97456 * 27 18 17 48 48 H 1.08996 * 117.50436 * 107.50063 * 28 27 18 49 49 H 1.09003 * 117.49700 * 252.52629 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0184 -0.6906 1.1960 5 6 2.8740 -1.6650 1.0813 6 7 3.4185 -1.9629 -0.1501 7 1 3.1638 -1.4467 -0.9308 8 6 4.3253 -2.9947 -0.2716 9 7 4.8397 -3.2756 -1.4338 10 6 5.6976 -4.4529 -1.5900 11 6 5.0822 -5.3991 -2.6229 12 8 5.0731 -4.7653 -3.9036 13 7 4.6908 -3.7257 0.8391 14 1 5.3312 -4.4493 0.7542 15 6 4.1428 -3.4308 2.0696 16 7 4.4850 -4.1232 3.1174 17 6 5.5466 -5.1278 3.0167 18 6 4.9561 -6.5193 3.2534 19 6 3.7623 -6.5711 4.1716 20 1 2.7654 -6.4769 3.7670 21 6 3.9428 -6.7390 5.5282 22 7 5.1567 -6.7460 6.0341 23 14 2.4632 -6.9562 6.6474 24 1 1.2192 -6.9115 5.8377 25 1 2.5552 -8.2661 7.3409 26 1 2.4389 -5.8641 7.6535 27 6 5.9262 -7.7018 3.2884 28 6 4.9957 -7.5121 2.0889 29 7 3.2363 -2.3988 2.1911 30 1 2.8533 -2.1892 3.0573 31 1 -0.3632 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 -0.3633 -1.0277 -0.0005 34 1 1.8933 -0.5138 -0.8900 35 1 1.6767 1.9563 -0.8900 36 1 1.6767 1.9562 0.8900 37 1 3.1301 1.4425 -0.0005 38 1 6.6859 -4.1400 -1.9271 39 1 5.7861 -4.9674 -0.6332 40 1 5.6722 -6.3141 -2.6744 41 1 4.0605 -5.6415 -2.3302 42 1 4.6953 -5.3088 -4.6086 43 1 6.3110 -4.9251 3.7669 44 1 5.9928 -5.0866 2.0231 45 1 5.2814 -6.7911 6.9950 46 1 6.9852 -7.4885 3.1424 47 1 5.7013 -8.5171 3.9759 48 1 5.4423 -7.1739 1.1538 49 1 4.1582 -8.2023 1.9875 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343046497.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:42 Heat of formation + Delta-G solvation = 77.099385 kcal Electronic energy + Delta-G solvation = -29934.785462 eV Core-core repulsion = 25934.374942 eV Total energy + Delta-G solvation = -4000.410519 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.32235 -39.27934 -38.64531 -37.93575 -37.22714 -35.88492 -34.14066 -33.85265 -33.06312 -31.75163 -29.76462 -28.10072 -27.98682 -27.13888 -24.59237 -23.65355 -22.91610 -22.28114 -21.92251 -21.11871 -20.91233 -19.82308 -18.62305 -18.11157 -18.04722 -17.57172 -16.99366 -16.97720 -16.50876 -16.20891 -15.73614 -15.45838 -15.28993 -15.12609 -14.71813 -14.61576 -14.54403 -14.22749 -13.89082 -13.62125 -13.40182 -13.30662 -13.01467 -12.95260 -12.85936 -12.80323 -12.41657 -12.37650 -12.26771 -12.13430 -12.00149 -11.55931 -11.09865 -10.93526 -10.70989 -10.49729 -10.42729 -10.09851 -9.92588 -9.79157 -9.69339 -8.88447 -8.00228 -6.05562 0.83181 0.94953 1.01773 1.40638 1.44549 1.53025 1.66610 1.85412 2.28290 2.49076 3.28450 3.36099 3.46407 3.58009 3.64297 3.85994 4.01857 4.10697 4.23331 4.25782 4.28410 4.34983 4.40515 4.46828 4.57502 4.60219 4.68729 4.74863 4.84182 4.87289 4.93322 4.94973 4.98943 5.02838 5.09383 5.18833 5.27611 5.36463 5.39969 5.50977 5.60671 5.63884 5.67607 5.85675 5.99214 6.32556 6.47972 6.75182 6.91940 6.96140 7.15209 7.36005 7.58978 9.08323 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.008641 B = 0.004044 C = 0.002973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3239.463213 B = 6921.458157 C = 9417.224225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.083 3.917 3 C -0.139 4.139 4 N -0.615 5.615 5 C 0.612 3.388 6 N -0.655 5.655 7 H 0.445 0.555 8 C 0.593 3.407 9 N -0.614 5.614 10 C 0.061 3.939 11 C 0.088 3.912 12 O -0.579 6.579 13 N -0.703 5.703 14 H 0.434 0.566 15 C 0.569 3.431 16 N -0.565 5.565 17 C 0.127 3.873 18 C 0.015 3.985 19 C -0.468 4.468 20 H 0.037 0.963 21 C 0.032 3.968 22 N -0.907 5.907 23 Si 0.938 3.062 24 H -0.275 1.275 25 H -0.285 1.285 26 H -0.284 1.284 27 C -0.153 4.153 28 C -0.192 4.192 29 N -0.618 5.618 30 H 0.449 0.551 31 H 0.058 0.942 32 H 0.083 0.917 33 H 0.042 0.958 34 H 0.050 0.950 35 H 0.083 0.917 36 H 0.058 0.942 37 H 0.045 0.955 38 H 0.089 0.911 39 H 0.051 0.949 40 H 0.075 0.925 41 H 0.037 0.963 42 H 0.392 0.608 43 H 0.058 0.942 44 H 0.029 0.971 45 H 0.255 0.745 46 H 0.078 0.922 47 H 0.057 0.943 48 H 0.093 0.907 49 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.548 9.854 -17.818 20.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.028 4.028 3 C -0.197 4.197 4 N -0.352 5.352 5 C 0.246 3.754 6 N -0.305 5.305 7 H 0.292 0.708 8 C 0.226 3.774 9 N -0.350 5.350 10 C -0.069 4.069 11 C 0.010 3.990 12 O -0.387 6.387 13 N -0.360 5.360 14 H 0.282 0.718 15 C 0.201 3.799 16 N -0.295 5.295 17 C -0.003 4.003 18 C 0.014 3.986 19 C -0.506 4.506 20 H 0.055 0.945 21 C -0.167 4.167 22 N -0.546 5.546 23 Si 0.765 3.235 24 H -0.200 1.200 25 H -0.212 1.212 26 H -0.211 1.211 27 C -0.191 4.191 28 C -0.229 4.229 29 N -0.262 5.262 30 H 0.293 0.707 31 H 0.078 0.922 32 H 0.101 0.899 33 H 0.062 0.938 34 H 0.067 0.933 35 H 0.101 0.899 36 H 0.077 0.923 37 H 0.064 0.936 38 H 0.107 0.893 39 H 0.069 0.931 40 H 0.093 0.907 41 H 0.055 0.945 42 H 0.241 0.759 43 H 0.076 0.924 44 H 0.047 0.953 45 H 0.064 0.936 46 H 0.097 0.903 47 H 0.075 0.925 48 H 0.112 0.888 49 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -2.750 10.838 -16.672 20.074 hybrid contribution 0.007 -1.706 0.188 1.717 sum -2.743 9.132 -16.483 19.042 Atomic orbital electron populations 1.21744 0.92831 1.01632 1.02876 1.21446 0.96681 0.95167 0.89456 1.21854 1.00417 0.94374 1.03045 1.72548 1.19711 1.12004 1.30983 1.18929 0.89468 0.88548 0.78438 1.42499 1.43058 1.34212 1.10742 0.70823 1.19367 0.88396 0.85401 0.84224 1.72540 1.23506 1.22556 1.16383 1.21894 0.97337 0.90431 0.97284 1.22143 0.99276 0.94064 0.83538 1.86524 1.86172 1.47240 1.18734 1.44099 1.48113 1.38409 1.05353 0.71768 1.19048 0.89211 0.89097 0.82580 1.72399 1.20135 1.13340 1.23612 1.21202 0.91061 0.91383 0.96664 1.19064 0.96751 0.86876 0.95916 1.20253 0.90865 1.48118 0.91388 0.94521 1.25408 0.97184 0.94976 0.99150 1.70064 1.21346 1.51598 1.11588 0.85829 0.81049 0.77222 0.79364 1.19977 1.21156 1.21067 1.22385 0.94842 1.02352 0.99512 1.23153 1.01930 1.05315 0.92531 1.40769 1.44623 1.30089 1.10691 0.70727 0.92249 0.89862 0.93836 0.93251 0.89852 0.92276 0.93608 0.89313 0.93102 0.90733 0.94475 0.75895 0.92356 0.95297 0.93606 0.90330 0.92473 0.88830 0.91036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.24 9.52 71.98 0.69 -1.55 16 2 C 0.08 1.55 3.42 44.99 0.15 1.70 16 3 C -0.14 -2.22 9.52 71.98 0.69 -1.53 16 4 N -0.62 -15.06 10.21 -328.20 -3.35 -18.41 16 5 C 0.61 15.80 8.51 260.20 2.21 18.02 16 6 N -0.65 -15.34 5.32 -197.29 -1.05 -16.39 16 7 H 0.44 8.82 6.25 -92.71 -0.58 8.25 16 8 C 0.59 15.58 8.51 260.20 2.21 17.79 16 9 N -0.61 -15.90 10.56 -348.76 -3.68 -19.58 16 10 C 0.06 1.37 6.69 86.38 0.58 1.95 16 11 C 0.09 1.71 7.39 71.98 0.53 2.24 16 12 O -0.58 -11.71 13.61 -148.98 -2.03 -13.74 16 13 N -0.70 -20.03 5.18 -197.28 -1.02 -21.05 16 14 H 0.43 11.91 3.48 -92.71 -0.32 11.58 16 15 C 0.57 18.92 8.51 260.20 2.21 21.13 16 16 N -0.57 -23.04 9.71 -348.74 -3.39 -26.43 16 17 C 0.13 5.26 6.43 86.38 0.56 5.82 16 18 C 0.01 0.68 1.92 -52.91 -0.10 0.58 16 19 C -0.47 -25.07 7.97 25.60 0.20 -24.86 16 20 H 0.04 2.05 7.82 -2.91 -0.02 2.03 16 21 C 0.03 1.76 5.37 84.65 0.45 2.22 16 22 N -0.91 -51.34 12.68 21.45 0.27 -51.07 16 23 Si 0.94 44.36 29.54 68.60 2.03 46.39 16 24 H -0.27 -12.86 7.11 99.48 0.71 -12.16 16 25 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 26 H -0.28 -13.37 7.11 99.48 0.71 -12.67 16 27 C -0.15 -6.74 9.15 30.59 0.28 -6.46 16 28 C -0.19 -7.49 9.89 30.62 0.30 -7.18 16 29 N -0.62 -18.09 5.49 -197.28 -1.08 -19.17 16 30 H 0.45 13.00 8.93 -92.71 -0.83 12.18 16 31 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.04 0.82 8.14 -2.38 -0.02 0.80 16 34 H 0.05 0.82 5.52 -2.39 -0.01 0.81 16 35 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.04 0.79 8.14 -2.38 -0.02 0.77 16 38 H 0.09 1.94 8.14 -2.38 -0.02 1.92 16 39 H 0.05 1.08 5.39 -2.39 -0.01 1.07 16 40 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 41 H 0.04 0.76 8.14 -2.39 -0.02 0.75 16 42 H 0.39 4.18 9.12 -74.06 -0.68 3.51 16 43 H 0.06 2.69 8.14 -2.39 -0.02 2.67 16 44 H 0.03 0.99 5.21 -2.38 -0.01 0.98 16 45 H 0.25 13.98 8.32 -92.70 -0.77 13.20 16 46 H 0.08 3.15 8.14 -2.39 -0.02 3.13 16 47 H 0.06 2.82 8.14 -2.39 -0.02 2.80 16 48 H 0.09 2.93 8.04 -2.39 -0.02 2.91 16 49 H 0.07 2.87 8.14 -2.39 -0.02 2.85 16 Total: -1.00 -66.02 400.34 -3.72 -69.75 By element: Atomic # 1 Polarization: 41.21 SS G_CDS: -1.39 Total: 39.82 kcal Atomic # 6 Polarization: 18.90 SS G_CDS: 10.97 Total: 29.87 kcal Atomic # 7 Polarization: -158.79 SS G_CDS: -13.30 Total: -172.09 kcal Atomic # 8 Polarization: -11.71 SS G_CDS: -2.03 Total: -13.74 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.39 kcal Total: -66.02 -3.72 -69.75 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343046497.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.847 kcal (2) G-P(sol) polarization free energy of solvation -66.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.747 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds