Wall clock time and date at job start Tue Mar 31 2020 19:52:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47252 * 2 1 4 4 C 1.53009 * 109.47092 * 240.00036 * 2 1 3 5 5 C 1.50701 * 109.46897 * 60.00039 * 4 2 1 6 6 H 1.07993 * 120.00415 * 0.02562 * 5 4 2 7 7 C 1.37878 * 119.99568 * 179.97438 * 5 4 2 8 8 N 1.31513 * 120.00259 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 119.99849 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47200 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.46945 * 119.99978 * 9 7 5 12 12 H 1.48499 * 109.47229 * 239.99927 * 9 7 5 13 13 C 1.52997 * 109.47116 * 120.00312 * 2 1 3 14 14 N 1.46900 * 109.47115 * 296.02358 * 13 2 1 15 15 C 1.46899 * 111.00152 * 86.84510 * 14 13 2 16 16 C 1.53243 * 109.36445 * 187.24319 * 15 14 13 17 17 N 1.47087 * 108.51554 * 306.21048 * 16 15 14 18 18 C 1.34771 * 120.86024 * 231.11461 * 17 16 15 19 19 O 1.21284 * 119.99684 * 180.02562 * 18 17 16 20 20 C 1.50698 * 119.99918 * 0.03050 * 18 17 16 21 21 N 1.46507 * 109.46804 * 179.97438 * 20 18 17 22 22 C 1.34594 * 126.43624 * 124.71247 * 21 20 18 23 23 N 1.31071 * 106.68158 * 179.87388 * 22 21 20 24 24 N 1.28849 * 107.98747 * 0.38754 * 23 22 21 25 25 N 1.28741 * 109.39505 * 359.75044 * 24 23 22 26 26 C 1.47084 * 118.25553 * 51.14267 * 17 16 15 27 27 C 1.46901 * 111.00403 * 211.14970 * 14 13 2 28 28 H 1.08999 * 109.47151 * 310.95292 * 1 2 3 29 29 H 1.09004 * 109.46829 * 70.95386 * 1 2 3 30 30 H 1.08998 * 109.47077 * 190.95444 * 1 2 3 31 31 H 1.08998 * 109.47215 * 175.56814 * 3 2 1 32 32 H 1.08997 * 109.47143 * 295.57307 * 3 2 1 33 33 H 1.09001 * 109.46583 * 55.56932 * 3 2 1 34 34 H 1.08995 * 109.46915 * 180.02562 * 4 2 1 35 35 H 1.09003 * 109.46692 * 300.00081 * 4 2 1 36 36 H 0.96993 * 120.00054 * 180.02562 * 8 7 5 37 37 H 1.08997 * 109.47541 * 176.02358 * 13 2 1 38 38 H 1.09001 * 109.47645 * 56.01932 * 13 2 1 39 39 H 1.09006 * 109.49437 * 307.21861 * 15 14 13 40 40 H 1.09000 * 109.49049 * 67.26785 * 15 14 13 41 41 H 1.09000 * 109.62872 * 65.89142 * 16 15 14 42 42 H 1.08999 * 109.62806 * 186.47729 * 16 15 14 43 43 H 1.09006 * 109.46888 * 299.99145 * 20 18 17 44 44 H 1.08995 * 109.47349 * 59.99481 * 20 18 17 45 45 H 1.08004 * 126.66374 * 0.02562 * 22 21 20 46 46 H 1.09004 * 109.62450 * 189.11790 * 26 17 16 47 47 H 1.08999 * 109.62964 * 68.54246 * 26 17 16 48 48 H 1.09004 * 109.49125 * 292.70845 * 27 14 13 49 49 H 1.09000 * 109.48987 * 52.76053 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2493 5 6 1.5377 -0.0108 -2.4797 6 1 0.9172 0.8675 -2.3807 7 6 1.8712 -0.4816 -3.7320 8 7 2.6273 -1.5509 -3.8527 9 14 1.2480 0.3986 -5.2572 10 1 0.4226 1.5650 -4.8531 11 1 2.4027 0.8662 -6.0654 12 1 0.4238 -0.5354 -6.0657 13 6 2.0400 -0.7213 1.2492 14 7 1.6303 0.0244 2.4467 15 6 0.2893 -0.3825 2.8871 16 6 -0.1742 0.5380 4.0212 17 7 0.8535 0.5367 5.0734 18 6 0.5262 0.2999 6.3591 19 8 1.3863 0.3030 7.2142 20 6 -0.9083 0.0310 6.7342 21 7 -1.0013 -0.1948 8.1788 22 6 -1.7906 0.4702 9.0427 23 7 -1.5686 -0.0442 10.2276 24 7 -0.6828 -0.9710 10.0995 25 7 -0.3378 -1.0646 8.8627 26 6 2.2475 0.8013 4.6856 27 6 2.6152 -0.1301 3.5257 28 1 -0.3633 0.6736 0.7761 29 1 -0.3633 0.3354 -0.9715 30 1 -0.3633 -1.0089 0.1953 31 1 3.1271 1.4435 0.0794 32 1 1.7430 1.9329 -0.9270 33 1 1.6133 1.9787 0.8477 34 1 3.1300 -0.7217 -1.2491 35 1 1.6767 -1.7489 -1.2493 36 1 2.8622 -1.8818 -4.7336 37 1 3.1277 -0.7835 1.2143 38 1 1.6196 -1.7263 1.2856 39 1 -0.4063 -0.3082 2.0511 40 1 0.3204 -1.4120 3.2439 41 1 -0.3062 1.5507 3.6401 42 1 -1.1164 0.1713 4.4286 43 1 -1.5224 0.8889 6.4600 44 1 -1.2627 -0.8535 6.2050 45 1 -2.4758 1.2706 8.8053 46 1 2.9060 0.6089 5.5327 47 1 2.3485 1.8391 4.3681 48 1 2.6140 -1.1630 3.8741 49 1 3.6066 0.1269 3.1527 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000349065400.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:52:36 Heat of formation + Delta-G solvation = 103.805362 kcal Electronic energy + Delta-G solvation = -29602.206583 eV Core-core repulsion = 25602.954122 eV Total energy + Delta-G solvation = -3999.252461 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -44.50369 -40.74604 -38.84265 -36.64699 -35.82366 -34.24377 -32.78941 -32.32467 -31.63720 -29.91855 -28.06468 -27.03466 -26.49836 -24.97237 -24.23764 -24.16589 -23.39625 -22.64428 -21.46562 -19.59676 -18.46114 -18.11127 -17.82500 -16.94523 -16.53029 -16.33335 -16.10948 -15.89394 -15.34060 -15.17789 -14.74155 -14.48556 -14.28665 -14.14783 -13.47747 -13.43002 -13.12334 -12.88005 -12.76369 -12.62025 -12.44408 -12.10785 -11.83400 -11.77303 -11.57634 -11.48641 -11.45352 -11.41775 -11.01725 -10.81868 -10.75754 -10.73874 -10.48601 -10.45740 -10.29920 -10.10555 -9.74343 -9.30260 -9.05069 -8.88572 -8.38917 -8.20060 -6.03218 -4.03581 0.86803 1.38779 1.90740 1.95946 2.39763 3.26920 3.35386 3.37691 3.49902 3.75168 3.80344 3.83533 4.12584 4.37607 4.42404 4.50073 4.66540 4.80268 4.95318 5.03611 5.06868 5.14022 5.31094 5.32758 5.41573 5.51151 5.57265 5.58808 5.64761 5.67195 5.81054 5.88729 5.99594 6.10218 6.18855 6.38570 6.57992 6.64145 6.74288 6.77302 7.03169 7.06242 7.13736 7.22949 7.30635 7.48851 7.62908 7.76763 7.96724 8.28477 8.40436 9.02054 9.59568 11.08341 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.033775 B = 0.002008 C = 0.001970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 828.814789 B =13940.460002 C =14208.259389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.051 4.051 3 C -0.114 4.114 4 C 0.032 3.968 5 C -0.507 4.507 6 H 0.060 0.940 7 C 0.054 3.946 8 N -0.896 5.896 9 Si 0.887 3.113 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.286 1.286 13 C 0.066 3.934 14 N -0.528 5.528 15 C 0.022 3.978 16 C 0.106 3.894 17 N -0.603 5.603 18 C 0.503 3.497 19 O -0.515 6.515 20 C 0.096 3.904 21 N -0.301 5.301 22 C 0.160 3.840 23 N -0.307 5.307 24 N -0.079 5.079 25 N -0.062 5.062 26 C 0.120 3.880 27 C 0.040 3.960 28 H 0.042 0.958 29 H 0.066 0.934 30 H 0.036 0.964 31 H 0.035 0.965 32 H 0.055 0.945 33 H 0.042 0.958 34 H 0.014 0.986 35 H 0.012 0.988 36 H 0.259 0.741 37 H 0.066 0.934 38 H 0.035 0.965 39 H 0.113 0.887 40 H 0.034 0.966 41 H 0.087 0.913 42 H 0.082 0.918 43 H 0.144 0.856 44 H 0.136 0.864 45 H 0.236 0.764 46 H 0.094 0.906 47 H 0.080 0.920 48 H 0.035 0.965 49 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.768 6.016 18.253 21.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.052 4.052 3 C -0.171 4.171 4 C -0.005 4.005 5 C -0.545 4.545 6 H 0.078 0.922 7 C -0.147 4.147 8 N -0.536 5.536 9 Si 0.716 3.284 10 H -0.198 1.198 11 H -0.212 1.212 12 H -0.212 1.212 13 C -0.061 4.061 14 N -0.253 5.253 15 C -0.107 4.107 16 C -0.017 4.017 17 N -0.338 5.338 18 C 0.287 3.713 19 O -0.389 6.389 20 C -0.030 4.030 21 N -0.103 5.103 22 C -0.139 4.139 23 N -0.154 5.154 24 N -0.073 5.073 25 N -0.049 5.049 26 C -0.002 4.002 27 C -0.089 4.089 28 H 0.061 0.939 29 H 0.085 0.915 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.074 0.926 33 H 0.061 0.939 34 H 0.032 0.968 35 H 0.030 0.970 36 H 0.068 0.932 37 H 0.085 0.915 38 H 0.054 0.946 39 H 0.131 0.869 40 H 0.052 0.948 41 H 0.106 0.894 42 H 0.100 0.900 43 H 0.162 0.838 44 H 0.154 0.846 45 H 0.252 0.748 46 H 0.112 0.888 47 H 0.099 0.901 48 H 0.053 0.947 49 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -8.611 5.509 19.399 21.928 hybrid contribution -0.655 0.104 -1.763 1.884 sum -9.266 5.614 17.636 20.698 Atomic orbital electron populations 1.21983 0.96247 0.99214 1.01517 1.20571 0.94766 0.96054 0.93789 1.21581 0.99335 0.95832 1.00393 1.19131 0.96089 0.95032 0.90260 1.21249 1.30825 1.11901 0.90538 0.92164 1.25028 0.95402 0.95113 0.99117 1.69968 1.37215 1.23189 1.23256 0.86611 0.78630 0.79700 0.83496 1.19764 1.21166 1.21197 1.22378 0.99953 0.94546 0.89211 1.61948 1.00979 1.57573 1.04788 1.22954 0.93460 0.96011 0.98259 1.22063 0.89654 1.02129 0.87830 1.48145 1.10083 1.69656 1.05882 1.20075 0.89770 0.78294 0.83139 1.90847 1.49711 1.50115 1.48274 1.22082 0.98615 1.07090 0.75202 1.48196 1.27519 1.24318 1.10274 1.27753 0.99236 1.01482 0.85419 1.75001 1.12764 1.07498 1.20135 1.78697 1.08070 1.12772 1.07739 1.79040 1.14748 1.10785 1.00302 1.21817 0.80870 1.00059 0.97454 1.22528 0.97024 0.97730 0.91606 0.93938 0.91466 0.94482 0.94533 0.92560 0.93899 0.96775 0.96986 0.93176 0.91501 0.94641 0.86936 0.94754 0.89439 0.89994 0.83818 0.84642 0.74815 0.88793 0.90128 0.94678 0.89166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.10 6.81 37.16 0.25 -1.85 16 2 C -0.05 -0.90 0.60 -154.50 -0.09 -0.99 16 3 C -0.11 -1.95 8.01 37.16 0.30 -1.65 16 4 C 0.03 0.76 4.04 -27.88 -0.11 0.64 16 5 C -0.51 -13.06 7.44 -34.44 -0.26 -13.32 16 6 H 0.06 1.51 5.76 -52.49 -0.30 1.21 16 7 C 0.05 1.47 5.46 -17.82 -0.10 1.37 16 8 N -0.90 -25.88 13.29 55.43 0.74 -25.15 16 9 Si 0.89 20.73 29.54 -169.99 -5.02 15.71 16 10 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 11 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 12 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 13 C 0.07 0.97 4.24 -3.83 -0.02 0.95 16 14 N -0.53 -5.99 3.59 -234.32 -0.84 -6.83 16 15 C 0.02 0.19 5.01 -3.70 -0.02 0.18 16 16 C 0.11 0.61 6.50 -3.60 -0.02 0.58 16 17 N -0.60 -4.72 3.01 -172.45 -0.52 -5.24 16 18 C 0.50 4.37 7.73 -10.99 -0.08 4.29 16 19 O -0.51 -7.00 15.15 5.55 0.08 -6.92 16 20 C 0.10 0.42 5.33 -5.19 -0.03 0.39 16 21 N -0.30 -2.47 3.19 -63.73 -0.20 -2.68 16 22 C 0.16 1.08 12.79 -90.39 -1.16 -0.07 16 23 N -0.31 -3.49 12.36 29.59 0.37 -3.12 16 24 N -0.08 -1.09 13.43 60.35 0.81 -0.27 16 25 N -0.06 -0.79 12.29 60.35 0.74 -0.05 16 26 C 0.12 1.10 6.60 -3.60 -0.02 1.07 16 27 C 0.04 0.41 5.52 -3.70 -0.02 0.39 16 28 H 0.04 0.55 6.20 -51.93 -0.32 0.23 16 29 H 0.07 1.23 6.34 -51.93 -0.33 0.90 16 30 H 0.04 0.56 7.71 -51.93 -0.40 0.16 16 31 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.06 1.07 6.48 -51.93 -0.34 0.73 16 33 H 0.04 0.64 7.63 -51.93 -0.40 0.24 16 34 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 36 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 37 H 0.07 1.02 7.59 -51.93 -0.39 0.63 16 38 H 0.04 0.54 7.81 -51.93 -0.41 0.13 16 39 H 0.11 1.06 4.13 -51.93 -0.21 0.84 16 40 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 41 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 42 H 0.08 0.17 6.02 -51.93 -0.31 -0.14 16 43 H 0.14 -0.06 7.94 -51.93 -0.41 -0.47 16 44 H 0.14 0.31 7.66 -51.93 -0.40 -0.09 16 45 H 0.24 0.16 8.06 -52.48 -0.42 -0.27 16 46 H 0.09 0.96 7.06 -51.93 -0.37 0.59 16 47 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 48 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 49 H 0.09 0.92 7.87 -51.93 -0.41 0.51 16 LS Contribution 382.80 15.07 5.77 5.77 Total: -1.00 -35.99 382.80 -6.97 -42.96 By element: Atomic # 1 Polarization: 1.36 SS G_CDS: -7.52 Total: -6.16 kcal Atomic # 6 Polarization: -6.63 SS G_CDS: -1.38 Total: -8.01 kcal Atomic # 7 Polarization: -44.44 SS G_CDS: 1.09 Total: -43.35 kcal Atomic # 8 Polarization: -7.00 SS G_CDS: 0.08 Total: -6.92 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -35.99 -6.97 -42.96 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349065400.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.766 kcal (2) G-P(sol) polarization free energy of solvation -35.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.960 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds