Wall clock time and date at job start Tue Mar 31 2020 19:52:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47252 * 2 1 4 4 C 1.53009 * 109.47092 * 240.00036 * 2 1 3 5 5 C 1.50701 * 109.46897 * 60.00039 * 4 2 1 6 6 H 1.07993 * 120.00415 * 0.02562 * 5 4 2 7 7 C 1.37878 * 119.99568 * 179.97438 * 5 4 2 8 8 N 1.31513 * 120.00259 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 119.99849 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47200 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.46945 * 119.99978 * 9 7 5 12 12 H 1.48499 * 109.47229 * 239.99927 * 9 7 5 13 13 C 1.52997 * 109.47116 * 120.00312 * 2 1 3 14 14 N 1.46900 * 109.47115 * 296.02358 * 13 2 1 15 15 C 1.46899 * 111.00152 * 86.84510 * 14 13 2 16 16 C 1.53243 * 109.36445 * 187.24319 * 15 14 13 17 17 N 1.47087 * 108.51554 * 306.21048 * 16 15 14 18 18 C 1.34771 * 120.86024 * 231.11461 * 17 16 15 19 19 O 1.21284 * 119.99684 * 180.02562 * 18 17 16 20 20 C 1.50698 * 119.99918 * 0.03050 * 18 17 16 21 21 N 1.46507 * 109.46804 * 179.97438 * 20 18 17 22 22 C 1.34594 * 126.43624 * 124.71247 * 21 20 18 23 23 N 1.31071 * 106.68158 * 179.87388 * 22 21 20 24 24 N 1.28849 * 107.98747 * 0.38754 * 23 22 21 25 25 N 1.28741 * 109.39505 * 359.75044 * 24 23 22 26 26 C 1.47084 * 118.25553 * 51.14267 * 17 16 15 27 27 C 1.46901 * 111.00403 * 211.14970 * 14 13 2 28 28 H 1.08999 * 109.47151 * 310.95292 * 1 2 3 29 29 H 1.09004 * 109.46829 * 70.95386 * 1 2 3 30 30 H 1.08998 * 109.47077 * 190.95444 * 1 2 3 31 31 H 1.08998 * 109.47215 * 175.56814 * 3 2 1 32 32 H 1.08997 * 109.47143 * 295.57307 * 3 2 1 33 33 H 1.09001 * 109.46583 * 55.56932 * 3 2 1 34 34 H 1.08995 * 109.46915 * 180.02562 * 4 2 1 35 35 H 1.09003 * 109.46692 * 300.00081 * 4 2 1 36 36 H 0.96993 * 120.00054 * 180.02562 * 8 7 5 37 37 H 1.08997 * 109.47541 * 176.02358 * 13 2 1 38 38 H 1.09001 * 109.47645 * 56.01932 * 13 2 1 39 39 H 1.09006 * 109.49437 * 307.21861 * 15 14 13 40 40 H 1.09000 * 109.49049 * 67.26785 * 15 14 13 41 41 H 1.09000 * 109.62872 * 65.89142 * 16 15 14 42 42 H 1.08999 * 109.62806 * 186.47729 * 16 15 14 43 43 H 1.09006 * 109.46888 * 299.99145 * 20 18 17 44 44 H 1.08995 * 109.47349 * 59.99481 * 20 18 17 45 45 H 1.08004 * 126.66374 * 0.02562 * 22 21 20 46 46 H 1.09004 * 109.62450 * 189.11790 * 26 17 16 47 47 H 1.08999 * 109.62964 * 68.54246 * 26 17 16 48 48 H 1.09004 * 109.49125 * 292.70845 * 27 14 13 49 49 H 1.09000 * 109.48987 * 52.76053 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2493 5 6 1.5377 -0.0108 -2.4797 6 1 0.9172 0.8675 -2.3807 7 6 1.8712 -0.4816 -3.7320 8 7 2.6273 -1.5509 -3.8527 9 14 1.2480 0.3986 -5.2572 10 1 0.4226 1.5650 -4.8531 11 1 2.4027 0.8662 -6.0654 12 1 0.4238 -0.5354 -6.0657 13 6 2.0400 -0.7213 1.2492 14 7 1.6303 0.0244 2.4467 15 6 0.2893 -0.3825 2.8871 16 6 -0.1742 0.5380 4.0212 17 7 0.8535 0.5367 5.0734 18 6 0.5262 0.2999 6.3591 19 8 1.3863 0.3030 7.2142 20 6 -0.9083 0.0310 6.7342 21 7 -1.0013 -0.1948 8.1788 22 6 -1.7906 0.4702 9.0427 23 7 -1.5686 -0.0442 10.2276 24 7 -0.6828 -0.9710 10.0995 25 7 -0.3378 -1.0646 8.8627 26 6 2.2475 0.8013 4.6856 27 6 2.6152 -0.1301 3.5257 28 1 -0.3633 0.6736 0.7761 29 1 -0.3633 0.3354 -0.9715 30 1 -0.3633 -1.0089 0.1953 31 1 3.1271 1.4435 0.0794 32 1 1.7430 1.9329 -0.9270 33 1 1.6133 1.9787 0.8477 34 1 3.1300 -0.7217 -1.2491 35 1 1.6767 -1.7489 -1.2493 36 1 2.8622 -1.8818 -4.7336 37 1 3.1277 -0.7835 1.2143 38 1 1.6196 -1.7263 1.2856 39 1 -0.4063 -0.3082 2.0511 40 1 0.3204 -1.4120 3.2439 41 1 -0.3062 1.5507 3.6401 42 1 -1.1164 0.1713 4.4286 43 1 -1.5224 0.8889 6.4600 44 1 -1.2627 -0.8535 6.2050 45 1 -2.4758 1.2706 8.8053 46 1 2.9060 0.6089 5.5327 47 1 2.3485 1.8391 4.3681 48 1 2.6140 -1.1630 3.8741 49 1 3.6066 0.1269 3.1527 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000349065400.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:52:35 Heat of formation + Delta-G solvation = 78.066575 kcal Electronic energy + Delta-G solvation = -29603.322701 eV Core-core repulsion = 25602.954122 eV Total energy + Delta-G solvation = -4000.368579 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -45.16291 -41.42984 -39.83245 -37.77986 -36.45831 -35.37787 -34.11969 -33.45604 -32.39956 -30.53860 -29.23631 -28.55026 -27.83381 -26.17797 -25.01984 -24.79321 -24.38202 -23.96482 -22.23774 -20.25363 -19.56393 -18.92281 -18.50632 -18.29556 -17.62361 -17.08164 -16.76510 -16.67706 -16.40854 -16.21588 -15.96769 -15.68050 -15.00652 -14.89952 -14.64633 -14.45013 -14.27088 -14.01890 -13.86470 -13.64524 -13.51208 -13.13564 -13.05838 -12.76570 -12.67097 -12.56044 -12.39364 -12.29177 -12.23567 -12.20478 -12.13462 -12.06913 -11.89359 -11.59671 -11.46258 -11.25724 -10.96719 -10.80939 -10.68607 -10.48846 -9.83903 -9.17481 -8.12005 -6.18368 0.27383 0.95991 1.26405 1.33804 1.41635 1.43472 1.54720 1.84110 2.45225 2.91439 3.06409 3.22488 3.44011 3.50908 3.87253 3.94566 3.98119 3.98808 4.05816 4.19637 4.27890 4.36813 4.39115 4.48473 4.50677 4.51863 4.71420 4.74847 4.79119 4.81087 4.88030 4.91832 5.00778 5.14719 5.16365 5.19712 5.27620 5.34392 5.36068 5.58071 5.62292 5.69310 5.71222 5.93467 5.97873 6.02865 6.20495 6.26509 6.40249 6.90164 6.98118 7.49061 7.58446 9.00342 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.033775 B = 0.002008 C = 0.001970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 828.814789 B =13940.460002 C =14208.259389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.047 4.047 3 C -0.104 4.104 4 C 0.037 3.963 5 C -0.507 4.507 6 H 0.070 0.930 7 C -0.008 4.008 8 N -0.940 5.940 9 Si 0.955 3.045 10 H -0.257 1.257 11 H -0.287 1.287 12 H -0.284 1.284 13 C 0.078 3.922 14 N -0.525 5.525 15 C 0.015 3.985 16 C 0.109 3.891 17 N -0.600 5.600 18 C 0.499 3.501 19 O -0.574 6.574 20 C 0.093 3.907 21 N -0.299 5.299 22 C 0.186 3.814 23 N -0.348 5.348 24 N -0.120 5.120 25 N -0.100 5.100 26 C 0.126 3.874 27 C 0.045 3.955 28 H 0.082 0.918 29 H 0.041 0.959 30 H 0.040 0.960 31 H 0.024 0.976 32 H 0.035 0.965 33 H 0.073 0.927 34 H -0.021 1.021 35 H -0.018 1.018 36 H 0.258 0.742 37 H 0.051 0.949 38 H 0.027 0.973 39 H 0.114 0.886 40 H 0.030 0.970 41 H 0.102 0.898 42 H 0.132 0.868 43 H 0.207 0.793 44 H 0.164 0.836 45 H 0.298 0.702 46 H 0.077 0.923 47 H 0.089 0.911 48 H 0.023 0.977 49 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.330 8.587 18.497 24.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.047 4.047 3 C -0.161 4.161 4 C 0.000 4.000 5 C -0.545 4.545 6 H 0.088 0.912 7 C -0.204 4.204 8 N -0.581 5.581 9 Si 0.781 3.219 10 H -0.181 1.181 11 H -0.213 1.213 12 H -0.210 1.210 13 C -0.050 4.050 14 N -0.249 5.249 15 C -0.113 4.113 16 C -0.013 4.013 17 N -0.334 5.334 18 C 0.286 3.714 19 O -0.453 6.453 20 C -0.030 4.030 21 N -0.101 5.101 22 C -0.112 4.112 23 N -0.195 5.195 24 N -0.114 5.114 25 N -0.087 5.087 26 C 0.003 3.997 27 C -0.084 4.084 28 H 0.101 0.899 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.044 0.956 32 H 0.054 0.946 33 H 0.092 0.908 34 H -0.003 1.003 35 H 0.000 1.000 36 H 0.067 0.933 37 H 0.070 0.930 38 H 0.045 0.955 39 H 0.132 0.868 40 H 0.048 0.952 41 H 0.121 0.879 42 H 0.150 0.850 43 H 0.224 0.776 44 H 0.182 0.818 45 H 0.313 0.687 46 H 0.096 0.904 47 H 0.107 0.893 48 H 0.041 0.959 49 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -12.207 8.095 19.625 24.488 hybrid contribution 0.469 -0.678 -1.885 2.057 sum -11.737 7.417 17.740 22.528 Atomic orbital electron populations 1.21906 0.94280 1.00438 1.01491 1.20410 0.96284 0.95844 0.92183 1.21482 0.98780 0.95347 1.00530 1.19037 0.93829 0.94061 0.93122 1.21664 1.29852 1.11750 0.91273 0.91221 1.25938 0.95872 0.95950 1.02671 1.70117 1.39084 1.25101 1.23842 0.85543 0.78033 0.78896 0.79466 1.18060 1.21303 1.21043 1.22044 0.98897 0.94128 0.89946 1.61883 1.02487 1.56647 1.03931 1.23091 0.91702 0.96895 0.99647 1.22307 0.90518 1.02333 0.86111 1.48213 1.09808 1.68922 1.06417 1.20822 0.91267 0.76844 0.82502 1.90840 1.51906 1.52644 1.49881 1.22635 0.96101 1.10951 0.73290 1.48447 1.26780 1.23340 1.11581 1.28831 0.98001 1.00668 0.83662 1.74885 1.13407 1.08245 1.22995 1.78658 1.09577 1.14491 1.08715 1.78946 1.16335 1.12871 1.00532 1.21610 0.82098 0.99936 0.96036 1.22471 0.96789 0.97458 0.91649 0.89942 0.93981 0.94092 0.95637 0.94608 0.90814 1.00258 0.99987 0.93339 0.93049 0.95476 0.86823 0.95212 0.87949 0.85047 0.77601 0.81843 0.68728 0.90443 0.89296 0.95875 0.89672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.67 6.81 71.98 0.49 -3.18 16 2 C -0.05 -1.61 0.60 -52.18 -0.03 -1.64 16 3 C -0.10 -3.44 8.01 71.98 0.58 -2.86 16 4 C 0.04 1.80 4.04 29.85 0.12 1.92 16 5 C -0.51 -26.54 7.44 25.60 0.19 -26.35 16 6 H 0.07 3.46 5.76 -2.91 -0.02 3.44 16 7 C -0.01 -0.44 5.46 84.65 0.46 0.02 16 8 N -0.94 -56.08 13.29 21.45 0.28 -55.79 16 9 Si 0.95 42.78 29.54 68.60 2.03 44.81 16 10 H -0.26 -10.73 7.11 99.48 0.71 -10.03 16 11 H -0.29 -12.83 7.11 99.48 0.71 -12.12 16 12 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 13 C 0.08 2.27 4.24 86.30 0.37 2.64 16 14 N -0.53 -10.85 3.59 -895.25 -3.22 -14.07 16 15 C 0.01 0.21 5.01 86.38 0.43 0.64 16 16 C 0.11 0.63 6.50 86.35 0.56 1.20 16 17 N -0.60 -7.28 3.01 -817.91 -2.46 -9.74 16 18 C 0.50 7.12 7.73 87.66 0.68 7.80 16 19 O -0.57 -15.22 15.15 -3.04 -0.05 -15.26 16 20 C 0.09 0.31 5.33 85.63 0.46 0.77 16 21 N -0.30 -3.94 3.19 -355.55 -1.14 -5.08 16 22 C 0.19 1.80 12.79 180.27 2.31 4.11 16 23 N -0.35 -7.48 12.36 -60.29 -0.75 -8.22 16 24 N -0.12 -3.35 13.43 37.01 0.50 -2.85 16 25 N -0.10 -2.47 12.29 37.02 0.45 -2.02 16 26 C 0.13 2.11 6.60 86.35 0.57 2.68 16 27 C 0.05 0.89 5.52 86.38 0.48 1.37 16 28 H 0.08 1.77 6.20 -2.39 -0.01 1.75 16 29 H 0.04 1.46 6.34 -2.38 -0.02 1.44 16 30 H 0.04 1.16 7.71 -2.39 -0.02 1.14 16 31 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.03 1.31 6.48 -2.39 -0.02 1.30 16 33 H 0.07 1.97 7.63 -2.39 -0.02 1.95 16 34 H -0.02 -1.15 8.14 -2.39 -0.02 -1.17 16 35 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16 36 H 0.26 14.61 8.31 -92.71 -0.77 13.84 16 37 H 0.05 1.64 7.59 -2.39 -0.02 1.62 16 38 H 0.03 0.83 7.81 -2.39 -0.02 0.81 16 39 H 0.11 1.62 4.13 -2.38 -0.01 1.61 16 40 H 0.03 0.47 8.14 -2.39 -0.02 0.45 16 41 H 0.10 0.44 8.14 -2.39 -0.02 0.42 16 42 H 0.13 -0.48 6.02 -2.39 -0.01 -0.50 16 43 H 0.21 -1.92 7.94 -2.38 -0.02 -1.94 16 44 H 0.16 -0.27 7.66 -2.39 -0.02 -0.29 16 45 H 0.30 -1.59 8.06 -2.91 -0.02 -1.61 16 46 H 0.08 1.59 7.06 -2.39 -0.02 1.58 16 47 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 48 H 0.02 0.51 8.14 -2.38 -0.02 0.49 16 49 H 0.08 1.75 7.87 -2.39 -0.02 1.73 16 Total: -1.00 -88.18 382.80 4.27 -83.91 By element: Atomic # 1 Polarization: -5.76 SS G_CDS: 0.96 Total: -4.80 kcal Atomic # 6 Polarization: -18.53 SS G_CDS: 7.65 Total: -10.88 kcal Atomic # 7 Polarization: -91.45 SS G_CDS: -6.32 Total: -97.78 kcal Atomic # 8 Polarization: -15.22 SS G_CDS: -0.05 Total: -15.26 kcal Atomic # 14 Polarization: 42.78 SS G_CDS: 2.03 Total: 44.81 kcal Total: -88.18 4.27 -83.91 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349065400.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.977 kcal (2) G-P(sol) polarization free energy of solvation -88.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.911 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds