Wall clock time and date at job start Tue Mar 31 2020 19:52:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53005 * 109.47021 * 2 1 4 4 C 1.52999 * 109.47397 * 239.99983 * 2 1 3 5 5 C 1.50702 * 109.47233 * 59.99525 * 4 2 1 6 6 H 1.08000 * 119.99658 * 0.02562 * 5 4 2 7 7 C 1.37874 * 119.99884 * 180.02562 * 5 4 2 8 8 N 1.31514 * 120.00104 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 119.99827 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47262 * 60.00077 * 9 7 5 11 11 H 1.48502 * 109.47363 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.47058 * 300.00126 * 9 7 5 13 13 C 1.53000 * 109.46968 * 119.99425 * 2 1 3 14 14 N 1.46492 * 109.47353 * 300.00244 * 13 2 1 15 15 C 1.34779 * 120.00075 * 180.02562 * 14 13 2 16 16 O 1.21595 * 119.99959 * 359.97438 * 15 14 13 17 17 N 1.34770 * 120.00221 * 180.02562 * 15 14 13 18 18 C 1.46506 * 120.00087 * 179.97438 * 17 15 14 19 19 C 1.50702 * 109.47053 * 179.97438 * 18 17 15 20 20 N 1.31063 * 126.66406 * 270.17352 * 19 18 17 21 21 N 1.28838 * 107.99209 * 180.24353 * 20 19 18 22 22 N 1.28734 * 109.39911 * 359.75395 * 21 20 19 23 23 N 1.29019 * 108.80481 * 359.97438 * 22 21 20 24 24 C 1.46505 * 126.43541 * 179.97438 * 23 22 21 25 25 C 1.52997 * 109.47212 * 90.02655 * 24 23 22 26 26 C 1.53000 * 117.50165 * 243.62151 * 25 24 23 27 27 C 1.52994 * 59.99907 * 252.50793 * 26 25 24 28 28 H 1.08998 * 109.47075 * 300.00373 * 1 2 3 29 29 H 1.09009 * 109.46896 * 60.00045 * 1 2 3 30 30 H 1.08994 * 109.46704 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.46937 * 179.97438 * 3 2 1 32 32 H 1.08999 * 109.46757 * 299.99617 * 3 2 1 33 33 H 1.08998 * 109.47501 * 59.99888 * 3 2 1 34 34 H 1.08996 * 109.47408 * 180.02562 * 4 2 1 35 35 H 1.09005 * 109.46982 * 300.00123 * 4 2 1 36 36 H 0.97002 * 119.99990 * 179.97438 * 8 7 5 37 37 H 1.08996 * 109.47040 * 179.97438 * 13 2 1 38 38 H 1.09005 * 109.46713 * 60.00305 * 13 2 1 39 39 H 0.96995 * 120.00504 * 359.97438 * 14 13 2 40 40 H 0.96995 * 120.00358 * 359.97438 * 17 15 14 41 41 H 1.08997 * 109.46911 * 59.99781 * 18 17 15 42 42 H 1.08996 * 109.46794 * 299.99479 * 18 17 15 43 43 H 1.09002 * 109.47068 * 210.02715 * 24 23 22 44 44 H 1.09001 * 109.47372 * 330.02803 * 24 23 22 45 45 H 1.09003 * 115.54795 * 29.32516 * 25 24 23 46 46 H 1.09001 * 117.49810 * 359.97438 * 26 25 24 47 47 H 1.08995 * 117.50134 * 145.01745 * 26 25 24 48 48 H 1.09004 * 117.49933 * 252.50827 * 27 26 25 49 49 H 1.09002 * 117.49788 * 107.49222 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 1.5377 -0.0109 -2.4797 6 1 0.9171 0.8674 -2.3806 7 6 1.8704 -0.4823 -3.7319 8 7 2.6258 -1.5521 -3.8525 9 14 1.2483 0.3986 -5.2572 10 1 1.7443 1.7983 -5.2573 11 1 1.7432 -0.3015 -6.4697 12 1 -0.2367 0.3996 -5.2571 13 6 2.0400 -0.7211 1.2493 14 7 1.5517 -0.0305 2.4454 15 6 1.8777 -0.4906 3.6695 16 8 2.5767 -1.4792 3.7812 17 7 1.4280 0.1444 4.7699 18 6 1.7819 -0.3560 6.1006 19 6 1.1582 0.5261 7.1513 20 7 1.6914 1.5929 7.6946 21 7 0.8520 2.0655 8.5502 22 7 -0.2049 1.3308 8.5631 23 7 -0.0562 0.3733 7.7113 24 6 -1.0243 -0.6856 7.4146 25 6 -1.9470 -0.2304 6.2822 26 6 -3.4346 -0.0727 6.6032 27 6 -2.9576 -1.2448 5.7434 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8901 30 1 -0.3632 -1.0276 -0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9564 0.8899 34 1 3.1301 -0.7216 -1.2490 35 1 1.6767 -1.7489 -1.2492 36 1 2.8596 -1.8840 -4.7335 37 1 3.1300 -0.7215 1.2491 38 1 1.6766 -1.7488 1.2493 39 1 0.9943 0.7583 2.3564 40 1 0.8700 0.9328 4.6809 41 1 2.8657 -0.3469 6.2157 42 1 1.4128 -1.3751 6.2154 43 1 -0.4939 -1.5880 7.1105 44 1 -1.6176 -0.8953 8.3046 45 1 -1.5083 0.4695 5.5710 46 1 -3.7560 -0.2937 7.6210 47 1 -3.9749 0.7311 6.1033 48 1 -3.1841 -1.2122 4.6776 49 1 -2.9652 -2.2366 6.1956 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355200170.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:52:40 Heat of formation + Delta-G solvation = 101.545198 kcal Electronic energy + Delta-G solvation = -29120.025298 eV Core-core repulsion = 25120.674829 eV Total energy + Delta-G solvation = -3999.350469 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -44.65147 -40.07251 -38.53688 -37.41880 -35.70625 -35.27987 -33.72182 -32.71369 -32.00590 -29.23434 -27.88000 -27.04304 -26.56336 -25.75414 -24.00390 -23.16212 -22.95227 -22.63878 -21.42673 -20.91170 -19.08112 -18.30719 -17.80708 -17.55431 -16.55307 -16.17064 -16.01553 -15.66027 -15.21178 -15.04480 -14.71178 -14.57676 -14.23356 -14.04779 -13.97762 -13.37258 -13.11238 -12.89944 -12.83444 -12.79879 -12.54764 -12.16722 -12.12788 -12.08874 -11.60298 -11.43199 -11.20811 -11.04304 -11.04093 -10.90751 -10.82599 -10.73122 -10.67036 -10.44681 -10.30349 -10.20003 -9.92116 -9.50509 -9.25108 -8.97658 -8.71972 -8.38509 -6.02725 -4.04228 0.64828 1.40981 1.73755 2.67642 3.02483 3.19099 3.29660 3.35473 3.36130 3.36864 3.68386 3.81970 4.11208 4.20263 4.24955 4.30350 4.42480 4.43786 4.64431 4.87579 5.01612 5.07101 5.12021 5.24586 5.30324 5.32715 5.37457 5.43168 5.50940 5.58417 5.66394 5.69340 6.01276 6.11490 6.14447 6.20336 6.35063 6.51055 6.58187 6.68973 6.80557 7.01314 7.03166 7.08702 7.60454 7.72626 7.94707 7.96649 8.16680 8.36995 8.57033 9.00267 9.59000 11.08633 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.017059 B = 0.002238 C = 0.002117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1640.944965 B =12510.903623 C =13221.920094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.072 4.072 3 C -0.127 4.127 4 C 0.037 3.963 5 C -0.512 4.512 6 H 0.058 0.942 7 C 0.057 3.943 8 N -0.894 5.894 9 Si 0.889 3.111 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.278 1.278 13 C 0.147 3.853 14 N -0.732 5.732 15 C 0.706 3.294 16 O -0.587 6.587 17 N -0.749 5.749 18 C 0.228 3.772 19 C 0.166 3.834 20 N -0.282 5.282 21 N -0.076 5.076 22 N -0.085 5.085 23 N -0.292 5.292 24 C 0.142 3.858 25 C -0.184 4.184 26 C -0.169 4.169 27 C -0.157 4.157 28 H 0.027 0.973 29 H 0.066 0.934 30 H 0.047 0.953 31 H 0.048 0.952 32 H 0.066 0.934 33 H 0.027 0.973 34 H 0.019 0.981 35 H 0.019 0.981 36 H 0.261 0.739 37 H 0.064 0.936 38 H 0.063 0.937 39 H 0.394 0.606 40 H 0.396 0.604 41 H 0.110 0.890 42 H 0.094 0.906 43 H 0.118 0.882 44 H 0.116 0.884 45 H 0.112 0.888 46 H 0.101 0.899 47 H 0.100 0.900 48 H 0.106 0.894 49 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.840 1.026 22.838 25.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.073 4.073 3 C -0.184 4.184 4 C -0.001 4.001 5 C -0.551 4.551 6 H 0.077 0.923 7 C -0.144 4.144 8 N -0.533 5.533 9 Si 0.717 3.283 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.204 1.204 13 C 0.023 3.977 14 N -0.387 5.387 15 C 0.406 3.594 16 O -0.465 6.465 17 N -0.408 5.408 18 C 0.100 3.900 19 C -0.112 4.112 20 N -0.132 5.132 21 N -0.069 5.069 22 N -0.070 5.070 23 N -0.095 5.095 24 C 0.021 3.979 25 C -0.203 4.203 26 C -0.205 4.205 27 C -0.195 4.195 28 H 0.046 0.954 29 H 0.085 0.915 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.085 0.915 33 H 0.046 0.954 34 H 0.037 0.963 35 H 0.037 0.963 36 H 0.070 0.930 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.229 0.771 40 H 0.230 0.770 41 H 0.128 0.872 42 H 0.112 0.888 43 H 0.136 0.864 44 H 0.134 0.866 45 H 0.130 0.870 46 H 0.119 0.881 47 H 0.119 0.881 48 H 0.124 0.876 49 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -10.067 1.083 23.681 25.755 hybrid contribution -0.987 0.452 -1.526 1.873 sum -11.054 1.536 22.155 24.807 Atomic orbital electron populations 1.21750 0.95338 1.01094 1.00103 1.20920 0.95417 0.95899 0.95025 1.21760 1.00651 0.95857 1.00150 1.19085 0.96428 0.95210 0.89375 1.21131 1.31329 1.12081 0.90519 0.92349 1.25005 0.95297 0.95072 0.99067 1.69950 1.36850 1.22938 1.23588 0.86716 0.79108 0.79801 0.82697 1.20327 1.21383 1.20356 1.21542 0.98856 0.95619 0.81647 1.45364 1.55882 1.33079 1.04384 1.15834 0.80379 0.82871 0.80301 1.90953 1.42380 1.27364 1.85807 1.44958 1.58146 1.33821 1.03907 1.19348 1.00933 0.93357 0.76334 1.26067 0.85545 0.98305 1.01290 1.75107 1.24002 1.06839 1.07259 1.78708 0.95162 1.19201 1.13835 1.78935 1.20579 0.97185 1.10285 1.48623 1.13844 1.21124 1.25921 1.21924 0.89511 0.86428 1.00055 1.22477 0.91857 1.05591 1.00386 1.23141 0.94642 1.01153 1.01610 1.23034 1.00615 0.94758 1.01076 0.95444 0.91472 0.93352 0.93270 0.91461 0.95364 0.96265 0.96302 0.92951 0.91780 0.91822 0.77075 0.77034 0.87174 0.88807 0.86391 0.86609 0.86979 0.88071 0.88114 0.87574 0.87925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.05 8.05 37.16 0.30 -1.75 16 2 C -0.07 -1.29 0.54 -154.50 -0.08 -1.37 16 3 C -0.13 -2.13 8.05 37.16 0.30 -1.83 16 4 C 0.04 0.86 4.04 -27.88 -0.11 0.75 16 5 C -0.51 -13.23 7.65 -34.44 -0.26 -13.49 16 6 H 0.06 1.45 5.68 -52.49 -0.30 1.15 16 7 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 8 N -0.89 -25.92 13.29 55.43 0.74 -25.18 16 9 Si 0.89 20.82 29.54 -169.99 -5.02 15.80 16 10 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 11 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 12 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 13 C 0.15 2.41 4.56 -4.05 -0.02 2.39 16 14 N -0.73 -9.49 4.96 -65.23 -0.32 -9.81 16 15 C 0.71 9.25 8.57 -86.92 -0.74 8.51 16 16 O -0.59 -10.02 16.34 5.28 0.09 -9.94 16 17 N -0.75 -6.82 5.55 -66.41 -0.37 -7.19 16 18 C 0.23 1.84 6.01 -5.19 -0.03 1.81 16 19 C 0.17 1.47 7.50 -155.44 -1.17 0.30 16 20 N -0.28 -3.36 12.36 32.70 0.40 -2.95 16 21 N -0.08 -0.95 13.43 60.35 0.81 -0.14 16 22 N -0.08 -0.89 13.29 60.35 0.80 -0.09 16 23 N -0.29 -2.25 3.35 -58.27 -0.19 -2.44 16 24 C 0.14 0.59 6.50 -4.04 -0.03 0.57 16 25 C -0.18 -0.85 6.01 -90.62 -0.54 -1.40 16 26 C -0.17 -0.71 10.18 -26.73 -0.27 -0.98 16 27 C -0.16 -0.62 10.25 -26.74 -0.27 -0.90 16 28 H 0.03 0.35 6.86 -51.93 -0.36 0.00 16 29 H 0.07 1.20 6.62 -51.92 -0.34 0.86 16 30 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.07 1.23 6.62 -51.93 -0.34 0.88 16 33 H 0.03 0.38 6.86 -51.93 -0.36 0.02 16 34 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 37 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 38 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 39 H 0.39 4.28 6.18 -40.82 -0.25 4.03 16 40 H 0.40 2.99 8.48 -40.82 -0.35 2.65 16 41 H 0.11 0.97 8.14 -51.93 -0.42 0.55 16 42 H 0.09 0.61 7.17 -51.93 -0.37 0.24 16 43 H 0.12 0.29 7.13 -51.93 -0.37 -0.08 16 44 H 0.12 0.32 7.88 -51.93 -0.41 -0.09 16 45 H 0.11 0.65 8.14 -51.93 -0.42 0.22 16 46 H 0.10 0.34 8.03 -51.93 -0.42 -0.08 16 47 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 48 H 0.11 0.48 8.14 -51.93 -0.42 0.06 16 49 H 0.10 0.29 8.14 -51.93 -0.42 -0.13 16 LS Contribution 402.16 15.07 6.06 6.06 Total: -1.00 -32.96 402.16 -7.69 -40.66 By element: Atomic # 1 Polarization: 8.81 SS G_CDS: -7.65 Total: 1.16 kcal Atomic # 6 Polarization: -2.90 SS G_CDS: -3.04 Total: -5.93 kcal Atomic # 7 Polarization: -49.67 SS G_CDS: 1.87 Total: -47.81 kcal Atomic # 8 Polarization: -10.02 SS G_CDS: 0.09 Total: -9.94 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -32.96 -7.69 -40.66 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355200170.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.202 kcal (2) G-P(sol) polarization free energy of solvation -32.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.657 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds