Wall clock time and date at job start Tue Mar 31 2020 19:52:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53005 * 109.47021 * 2 1 4 4 C 1.52999 * 109.47397 * 239.99983 * 2 1 3 5 5 C 1.50702 * 109.47233 * 59.99525 * 4 2 1 6 6 H 1.08000 * 119.99658 * 0.02562 * 5 4 2 7 7 C 1.37874 * 119.99884 * 180.02562 * 5 4 2 8 8 N 1.31514 * 120.00104 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 119.99827 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47262 * 60.00077 * 9 7 5 11 11 H 1.48502 * 109.47363 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.47058 * 300.00126 * 9 7 5 13 13 C 1.53000 * 109.46968 * 119.99425 * 2 1 3 14 14 N 1.46492 * 109.47353 * 300.00244 * 13 2 1 15 15 C 1.34779 * 120.00075 * 180.02562 * 14 13 2 16 16 O 1.21595 * 119.99959 * 359.97438 * 15 14 13 17 17 N 1.34770 * 120.00221 * 180.02562 * 15 14 13 18 18 C 1.46506 * 120.00087 * 179.97438 * 17 15 14 19 19 C 1.50702 * 109.47053 * 179.97438 * 18 17 15 20 20 N 1.31063 * 126.66406 * 270.17352 * 19 18 17 21 21 N 1.28838 * 107.99209 * 180.24353 * 20 19 18 22 22 N 1.28734 * 109.39911 * 359.75395 * 21 20 19 23 23 N 1.29019 * 108.80481 * 359.97438 * 22 21 20 24 24 C 1.46505 * 126.43541 * 179.97438 * 23 22 21 25 25 C 1.52997 * 109.47212 * 90.02655 * 24 23 22 26 26 C 1.53000 * 117.50165 * 243.62151 * 25 24 23 27 27 C 1.52994 * 59.99907 * 252.50793 * 26 25 24 28 28 H 1.08998 * 109.47075 * 300.00373 * 1 2 3 29 29 H 1.09009 * 109.46896 * 60.00045 * 1 2 3 30 30 H 1.08994 * 109.46704 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.46937 * 179.97438 * 3 2 1 32 32 H 1.08999 * 109.46757 * 299.99617 * 3 2 1 33 33 H 1.08998 * 109.47501 * 59.99888 * 3 2 1 34 34 H 1.08996 * 109.47408 * 180.02562 * 4 2 1 35 35 H 1.09005 * 109.46982 * 300.00123 * 4 2 1 36 36 H 0.97002 * 119.99990 * 179.97438 * 8 7 5 37 37 H 1.08996 * 109.47040 * 179.97438 * 13 2 1 38 38 H 1.09005 * 109.46713 * 60.00305 * 13 2 1 39 39 H 0.96995 * 120.00504 * 359.97438 * 14 13 2 40 40 H 0.96995 * 120.00358 * 359.97438 * 17 15 14 41 41 H 1.08997 * 109.46911 * 59.99781 * 18 17 15 42 42 H 1.08996 * 109.46794 * 299.99479 * 18 17 15 43 43 H 1.09002 * 109.47068 * 210.02715 * 24 23 22 44 44 H 1.09001 * 109.47372 * 330.02803 * 24 23 22 45 45 H 1.09003 * 115.54795 * 29.32516 * 25 24 23 46 46 H 1.09001 * 117.49810 * 359.97438 * 26 25 24 47 47 H 1.08995 * 117.50134 * 145.01745 * 26 25 24 48 48 H 1.09004 * 117.49933 * 252.50827 * 27 26 25 49 49 H 1.09002 * 117.49788 * 107.49222 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 1.5377 -0.0109 -2.4797 6 1 0.9171 0.8674 -2.3806 7 6 1.8704 -0.4823 -3.7319 8 7 2.6258 -1.5521 -3.8525 9 14 1.2483 0.3986 -5.2572 10 1 1.7443 1.7983 -5.2573 11 1 1.7432 -0.3015 -6.4697 12 1 -0.2367 0.3996 -5.2571 13 6 2.0400 -0.7211 1.2493 14 7 1.5517 -0.0305 2.4454 15 6 1.8777 -0.4906 3.6695 16 8 2.5767 -1.4792 3.7812 17 7 1.4280 0.1444 4.7699 18 6 1.7819 -0.3560 6.1006 19 6 1.1582 0.5261 7.1513 20 7 1.6914 1.5929 7.6946 21 7 0.8520 2.0655 8.5502 22 7 -0.2049 1.3308 8.5631 23 7 -0.0562 0.3733 7.7113 24 6 -1.0243 -0.6856 7.4146 25 6 -1.9470 -0.2304 6.2822 26 6 -3.4346 -0.0727 6.6032 27 6 -2.9576 -1.2448 5.7434 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8901 30 1 -0.3632 -1.0276 -0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9564 0.8899 34 1 3.1301 -0.7216 -1.2490 35 1 1.6767 -1.7489 -1.2492 36 1 2.8596 -1.8840 -4.7335 37 1 3.1300 -0.7215 1.2491 38 1 1.6766 -1.7488 1.2493 39 1 0.9943 0.7583 2.3564 40 1 0.8700 0.9328 4.6809 41 1 2.8657 -0.3469 6.2157 42 1 1.4128 -1.3751 6.2154 43 1 -0.4939 -1.5880 7.1105 44 1 -1.6176 -0.8953 8.3046 45 1 -1.5083 0.4695 5.5710 46 1 -3.7560 -0.2937 7.6210 47 1 -3.9749 0.7311 6.1033 48 1 -3.1841 -1.2122 4.6776 49 1 -2.9652 -2.2366 6.1956 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000355200170.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:52:39 Heat of formation + Delta-G solvation = 79.227369 kcal Electronic energy + Delta-G solvation = -29120.993071 eV Core-core repulsion = 25120.674829 eV Total energy + Delta-G solvation = -4000.318243 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -45.39601 -41.16684 -38.95553 -38.78045 -36.51428 -36.01385 -35.22083 -34.04705 -33.30127 -29.81698 -29.14624 -28.48972 -27.92881 -27.01474 -24.83248 -24.67044 -23.53634 -23.20100 -22.11009 -21.74737 -20.23741 -19.36109 -18.67351 -18.36037 -18.26150 -17.31458 -16.83672 -16.57825 -16.29459 -16.03036 -15.56661 -15.46494 -15.37033 -15.11263 -14.95001 -14.56466 -14.30797 -14.24017 -13.90365 -13.69576 -13.51244 -13.33925 -13.23102 -12.81933 -12.74120 -12.55219 -12.40469 -12.35694 -12.29391 -12.19856 -12.00362 -11.97601 -11.69665 -11.49576 -11.40183 -11.23205 -11.11405 -10.94535 -10.83055 -10.48076 -10.46938 -9.82582 -8.11635 -6.18855 -0.05779 0.83057 0.92244 1.43964 1.45406 1.52541 1.73911 2.13779 2.45883 2.64847 2.75209 3.10407 3.22979 3.27037 3.47188 3.69623 3.89935 3.97823 4.01248 4.02631 4.14143 4.18640 4.26495 4.28738 4.42972 4.47957 4.64517 4.71886 4.78565 4.80461 4.83458 4.95363 5.00299 5.02517 5.14462 5.15186 5.16007 5.19500 5.23010 5.42755 5.51293 5.54385 5.57940 5.61841 5.84670 5.86303 5.93449 6.34030 6.95723 7.00774 7.39377 7.48630 7.53246 9.00522 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.017059 B = 0.002238 C = 0.002117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1640.944965 B =12510.903623 C =13221.920094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.063 4.063 3 C -0.122 4.122 4 C 0.039 3.961 5 C -0.513 4.513 6 H 0.071 0.929 7 C -0.004 4.004 8 N -0.937 5.937 9 Si 0.955 3.045 10 H -0.269 1.269 11 H -0.292 1.292 12 H -0.266 1.266 13 C 0.162 3.838 14 N -0.722 5.722 15 C 0.711 3.289 16 O -0.626 6.626 17 N -0.730 5.730 18 C 0.230 3.770 19 C 0.177 3.823 20 N -0.310 5.310 21 N -0.107 5.107 22 N -0.089 5.089 23 N -0.277 5.277 24 C 0.133 3.867 25 C -0.189 4.189 26 C -0.173 4.173 27 C -0.151 4.151 28 H 0.069 0.931 29 H 0.052 0.948 30 H 0.040 0.960 31 H 0.036 0.964 32 H 0.053 0.947 33 H 0.068 0.932 34 H -0.014 1.014 35 H -0.011 1.011 36 H 0.259 0.741 37 H 0.044 0.956 38 H 0.050 0.950 39 H 0.408 0.592 40 H 0.407 0.593 41 H 0.105 0.895 42 H 0.118 0.882 43 H 0.142 0.858 44 H 0.134 0.866 45 H 0.101 0.899 46 H 0.111 0.889 47 H 0.094 0.906 48 H 0.099 0.901 49 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.844 1.858 23.952 27.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.064 4.064 3 C -0.179 4.179 4 C 0.002 3.998 5 C -0.551 4.551 6 H 0.089 0.911 7 C -0.201 4.201 8 N -0.579 5.579 9 Si 0.781 3.219 10 H -0.194 1.194 11 H -0.218 1.218 12 H -0.191 1.191 13 C 0.038 3.962 14 N -0.378 5.378 15 C 0.411 3.589 16 O -0.507 6.507 17 N -0.389 5.389 18 C 0.103 3.897 19 C -0.102 4.102 20 N -0.160 5.160 21 N -0.100 5.100 22 N -0.075 5.075 23 N -0.080 5.080 24 C 0.014 3.986 25 C -0.208 4.208 26 C -0.209 4.209 27 C -0.189 4.189 28 H 0.088 0.912 29 H 0.071 0.929 30 H 0.059 0.941 31 H 0.055 0.945 32 H 0.072 0.928 33 H 0.086 0.914 34 H 0.004 0.996 35 H 0.008 0.992 36 H 0.068 0.932 37 H 0.063 0.937 38 H 0.069 0.931 39 H 0.246 0.754 40 H 0.243 0.757 41 H 0.123 0.877 42 H 0.135 0.865 43 H 0.159 0.841 44 H 0.152 0.848 45 H 0.119 0.881 46 H 0.129 0.871 47 H 0.112 0.888 48 H 0.118 0.882 49 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -12.124 1.967 24.830 27.702 hybrid contribution -0.400 0.140 -1.817 1.866 sum -12.524 2.107 23.013 26.285 Atomic orbital electron populations 1.21674 0.93511 1.01069 1.01432 1.20699 0.96737 0.96058 0.92891 1.21697 0.99910 0.94919 1.01420 1.18971 0.94328 0.94328 0.92189 1.21562 1.30383 1.12016 0.91133 0.91077 1.25906 0.95730 0.95865 1.02588 1.70106 1.38777 1.24886 1.24089 0.85651 0.78983 0.78729 0.78580 1.19371 1.21795 1.19134 1.21071 0.97594 0.95105 0.82468 1.45001 1.56033 1.33284 1.03474 1.15818 0.79919 0.82444 0.80765 1.90941 1.44137 1.29251 1.86375 1.44696 1.57292 1.33587 1.03308 1.19458 1.00781 0.94178 0.75278 1.25988 0.85715 0.97538 1.00954 1.75034 1.24838 1.08200 1.07933 1.78695 0.95922 1.20430 1.14968 1.78865 1.20154 0.97640 1.10852 1.48845 1.13818 1.20770 1.24574 1.22369 0.89406 0.85951 1.00891 1.22431 0.92051 1.05913 1.00402 1.23208 0.94324 1.01205 1.02209 1.23081 0.99701 0.95313 1.00804 0.91237 0.92929 0.94113 0.94511 0.92821 0.91367 0.99551 0.99239 0.93211 0.93730 0.93135 0.75425 0.75700 0.87690 0.86461 0.84066 0.84774 0.88053 0.87090 0.88756 0.88226 0.86466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.66 8.05 71.98 0.58 -3.08 16 2 C -0.06 -2.23 0.54 -52.18 -0.03 -2.25 16 3 C -0.12 -3.90 8.05 71.98 0.58 -3.32 16 4 C 0.04 1.93 4.04 29.85 0.12 2.05 16 5 C -0.51 -26.71 7.65 25.60 0.20 -26.51 16 6 H 0.07 3.46 5.68 -2.91 -0.02 3.44 16 7 C 0.00 -0.22 5.46 84.65 0.46 0.24 16 8 N -0.94 -55.99 13.29 21.45 0.28 -55.71 16 9 Si 0.95 42.80 29.54 68.60 2.03 44.82 16 10 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 11 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 12 H -0.27 -11.36 7.11 99.48 0.71 -10.66 16 13 C 0.16 5.27 4.56 86.38 0.39 5.66 16 14 N -0.72 -17.09 4.96 -478.54 -2.37 -19.46 16 15 C 0.71 17.17 8.57 179.06 1.53 18.70 16 16 O -0.63 -20.65 16.34 -4.02 -0.07 -20.72 16 17 N -0.73 -11.40 5.55 -482.29 -2.68 -14.07 16 18 C 0.23 3.17 6.01 85.63 0.51 3.69 16 19 C 0.18 2.78 7.50 138.14 1.04 3.81 16 20 N -0.31 -7.05 12.36 -50.46 -0.62 -7.67 16 21 N -0.11 -2.62 13.43 37.01 0.50 -2.12 16 22 N -0.09 -1.75 13.29 37.02 0.49 -1.26 16 23 N -0.28 -3.64 3.35 -338.26 -1.13 -4.77 16 24 C 0.13 0.70 6.50 86.38 0.56 1.26 16 25 C -0.19 -1.25 6.01 -10.80 -0.06 -1.32 16 26 C -0.17 -1.06 10.18 30.59 0.31 -0.75 16 27 C -0.15 -0.81 10.25 30.59 0.31 -0.49 16 28 H 0.07 1.53 6.86 -2.39 -0.02 1.52 16 29 H 0.05 1.77 6.62 -2.38 -0.02 1.76 16 30 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.05 1.86 6.62 -2.39 -0.02 1.85 16 33 H 0.07 1.62 6.86 -2.39 -0.02 1.61 16 34 H -0.01 -0.76 8.14 -2.39 -0.02 -0.78 16 35 H -0.01 -0.58 8.14 -2.38 -0.02 -0.60 16 36 H 0.26 14.77 8.31 -92.71 -0.77 14.00 16 37 H 0.04 1.62 8.14 -2.39 -0.02 1.61 16 38 H 0.05 1.78 8.14 -2.38 -0.02 1.76 16 39 H 0.41 7.35 6.18 -92.71 -0.57 6.78 16 40 H 0.41 4.89 8.48 -92.71 -0.79 4.11 16 41 H 0.11 1.67 8.14 -2.39 -0.02 1.65 16 42 H 0.12 1.14 7.17 -2.39 -0.02 1.12 16 43 H 0.14 0.13 7.13 -2.39 -0.02 0.11 16 44 H 0.13 0.28 7.88 -2.39 -0.02 0.26 16 45 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 46 H 0.11 0.46 8.03 -2.39 -0.02 0.44 16 47 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 48 H 0.10 0.69 8.14 -2.38 -0.02 0.67 16 49 H 0.12 0.28 8.14 -2.39 -0.02 0.27 16 Total: -1.00 -74.18 402.16 2.56 -71.62 By element: Atomic # 1 Polarization: 12.04 SS G_CDS: -0.38 Total: 11.67 kcal Atomic # 6 Polarization: -8.83 SS G_CDS: 6.51 Total: -2.32 kcal Atomic # 7 Polarization: -99.54 SS G_CDS: -5.53 Total: -105.07 kcal Atomic # 8 Polarization: -20.65 SS G_CDS: -0.07 Total: -20.72 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 2.03 Total: 44.82 kcal Total: -74.18 2.56 -71.62 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355200170.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.848 kcal (2) G-P(sol) polarization free energy of solvation -74.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.621 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds