Wall clock time and date at job start Tue Mar 31 2020 19:32:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42900 * 113.99732 * 2 1 4 4 C 1.53002 * 109.47271 * 180.02562 * 3 2 1 5 5 N 1.46501 * 109.46903 * 65.00261 * 4 3 2 6 6 C 1.36931 * 120.00080 * 270.00218 * 5 4 3 7 7 H 1.08001 * 120.00201 * 328.61069 * 6 5 4 8 8 C 1.38813 * 120.00275 * 148.61188 * 6 5 4 9 9 N 1.31616 * 120.00222 * 333.12741 * 8 6 5 10 10 Si 1.86799 * 120.00100 * 153.12847 * 8 6 5 11 11 H 1.48500 * 109.47523 * 84.99830 * 10 8 6 12 12 H 1.48500 * 109.47265 * 204.99952 * 10 8 6 13 13 H 1.48506 * 109.47302 * 324.99905 * 10 8 6 14 14 C 1.46503 * 119.99937 * 89.99981 * 5 4 3 15 15 C 1.50703 * 109.46863 * 86.27797 * 14 5 4 16 16 O 1.21286 * 119.99895 * 0.02562 * 15 14 5 17 17 N 1.34775 * 119.99847 * 179.71948 * 15 14 5 18 18 C 1.39472 * 119.99991 * 180.27184 * 17 15 14 19 19 C 1.36107 * 126.21545 * 0.03679 * 18 17 15 20 20 C 1.39756 * 107.82644 * 179.97438 * 19 18 17 21 21 N 1.30849 * 108.32755 * 359.97438 * 20 19 18 22 22 N 1.35263 * 126.21344 * 179.71765 * 18 17 15 23 23 C 1.46498 * 126.04881 * 359.96625 * 22 18 17 24 24 C 1.54274 * 110.03345 * 237.90669 * 23 22 18 25 25 C 1.54959 * 104.15907 * 217.13526 * 24 23 22 26 26 C 1.54898 * 102.77614 * 37.88916 * 25 24 23 27 27 C 1.53873 * 110.03150 * 120.68842 * 23 22 18 28 28 H 1.08996 * 109.46744 * 299.99407 * 1 2 3 29 29 H 1.08991 * 109.47351 * 59.99568 * 1 2 3 30 30 H 1.09001 * 109.46560 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47252 * 60.00220 * 3 2 1 32 32 H 1.09000 * 109.47632 * 300.00697 * 3 2 1 33 33 H 1.08999 * 109.47181 * 305.00389 * 4 3 2 34 34 H 1.08996 * 109.46964 * 185.00120 * 4 3 2 35 35 H 0.96999 * 120.00454 * 179.97438 * 9 8 6 36 36 H 1.08998 * 109.47163 * 326.28108 * 14 5 4 37 37 H 1.09002 * 109.46909 * 206.27563 * 14 5 4 38 38 H 0.97007 * 120.00104 * 0.28038 * 17 15 14 39 39 H 1.07997 * 126.08486 * 0.02562 * 19 18 17 40 40 H 1.08004 * 125.83958 * 180.02562 * 20 19 18 41 41 H 1.09002 * 110.01643 * 359.30033 * 23 22 18 42 42 H 1.09000 * 110.48022 * 335.78336 * 24 23 22 43 43 H 1.09001 * 110.48411 * 98.42599 * 24 23 22 44 44 H 1.08993 * 110.72541 * 279.57622 * 25 24 23 45 45 H 1.09000 * 110.76548 * 156.21883 * 25 24 23 46 46 H 1.09000 * 110.48579 * 203.40281 * 26 25 24 47 47 H 1.09004 * 110.59667 * 80.81825 * 26 25 24 48 48 H 1.09000 * 110.03645 * 238.56800 * 27 23 22 49 49 H 1.08999 * 110.03410 * 359.95193 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1848 -0.0006 5 7 3.9757 0.5646 -1.2528 6 6 4.0968 -0.7967 -1.3371 7 1 4.3716 -1.3695 -0.4637 8 6 3.8663 -1.4406 -2.5450 9 7 3.0581 -0.9029 -3.4337 10 14 4.7033 -3.0704 -2.9092 11 1 3.9031 -4.1786 -2.3289 12 1 4.8105 -3.2543 -4.3789 13 1 6.0619 -3.0741 -2.3095 14 6 4.2863 1.4010 -2.4148 15 6 5.7206 1.8567 -2.3367 16 8 6.4151 1.5161 -1.4025 17 7 6.2333 2.6378 -3.3080 18 6 7.5624 3.0550 -3.2386 19 6 8.4506 2.7497 -2.2536 20 6 9.6656 3.3650 -2.5673 21 7 9.5192 4.0142 -3.6939 22 7 8.2044 3.8315 -4.1411 23 6 7.6265 4.3846 -5.3684 24 6 8.4390 3.9157 -6.5931 25 6 8.4409 5.1430 -7.5392 26 6 8.5733 6.3329 -6.5564 27 6 7.7114 5.9208 -5.3451 28 1 -0.3633 0.5137 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3632 -1.0277 0.0005 31 1 1.6886 1.8464 0.8900 32 1 1.6885 1.8465 -0.8899 33 1 3.8515 0.5683 0.8409 34 1 3.9784 2.1766 0.0889 35 1 2.8973 -1.3527 -4.2780 36 1 3.6288 2.2703 -2.4230 37 1 4.1375 0.8242 -3.3277 38 1 5.6779 2.9100 -4.0553 39 1 8.2521 2.1398 -1.3847 40 1 10.5709 3.3128 -1.9806 41 1 6.5876 4.0696 -5.4665 42 1 9.4568 3.6586 -6.2999 43 1 7.9523 3.0655 -7.0709 44 1 7.5051 5.2032 -8.0947 45 1 9.2928 5.1062 -8.2182 46 1 8.1849 7.2458 -7.0080 47 1 9.6125 6.4689 -6.2567 48 1 6.7139 6.3514 -5.4329 49 1 8.1819 6.2549 -4.4203 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459537823.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:32:58 Heat of formation + Delta-G solvation = 30.357845 kcal Electronic energy + Delta-G solvation = -29983.797449 eV Core-core repulsion = 25949.067313 eV Total energy + Delta-G solvation = -4034.730136 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.23237 -38.92316 -37.91087 -37.13500 -35.19076 -34.21884 -31.93911 -31.58025 -29.56428 -28.98481 -28.42691 -27.36358 -26.55983 -25.63032 -23.41034 -22.14215 -21.82493 -20.94302 -20.44816 -19.51367 -19.28325 -18.00972 -16.79733 -16.09216 -15.79735 -15.68641 -15.52286 -15.22835 -15.00878 -14.71237 -14.13767 -14.02750 -13.99666 -13.63032 -13.53677 -13.32470 -13.24764 -13.12185 -12.73606 -11.97735 -11.86622 -11.75323 -11.43540 -11.40168 -11.34938 -11.33357 -11.14291 -10.95722 -10.84370 -10.75279 -10.64321 -10.37717 -10.36623 -10.27811 -10.10442 -9.87530 -9.08102 -8.82451 -8.67046 -8.50186 -7.65755 -6.75966 -5.87272 -3.27702 2.11038 2.42204 3.14202 3.36833 3.45790 3.50112 3.55093 3.63130 4.21059 4.31759 4.50369 4.56713 4.64994 4.89603 5.00280 5.18885 5.21446 5.22526 5.33267 5.38882 5.39510 5.49707 5.60041 5.63879 5.74075 5.76755 5.83769 5.90073 5.94320 5.96471 6.05445 6.07884 6.10902 6.16155 6.18081 6.22178 6.39112 6.41007 6.43246 6.53165 6.85956 7.06777 7.11656 7.40415 7.71347 7.86244 8.04141 8.12674 8.39473 8.80236 9.11431 9.72787 10.24721 11.18131 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.013056 B = 0.003098 C = 0.002955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2144.077100 B = 9035.329068 C = 9474.462509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.353 6.353 3 C 0.047 3.953 4 C 0.148 3.852 5 N -0.549 5.549 6 C -0.227 4.227 7 H 0.067 0.933 8 C 0.007 3.993 9 N -0.889 5.889 10 Si 0.891 3.109 11 H -0.284 1.284 12 H -0.291 1.291 13 H -0.279 1.279 14 C 0.131 3.869 15 C 0.485 3.515 16 O -0.497 6.497 17 N -0.664 5.664 18 C 0.319 3.681 19 C -0.293 4.293 20 C 0.055 3.945 21 N -0.304 5.304 22 N -0.388 5.388 23 C 0.159 3.841 24 C -0.132 4.132 25 C -0.122 4.122 26 C -0.119 4.119 27 C -0.131 4.131 28 H 0.023 0.977 29 H 0.032 0.968 30 H 0.075 0.925 31 H 0.025 0.975 32 H 0.037 0.963 33 H 0.058 0.942 34 H 0.052 0.948 35 H 0.253 0.747 36 H 0.059 0.941 37 H 0.133 0.867 38 H 0.402 0.598 39 H 0.170 0.830 40 H 0.179 0.821 41 H 0.095 0.905 42 H 0.084 0.916 43 H 0.072 0.928 44 H 0.070 0.930 45 H 0.070 0.930 46 H 0.066 0.934 47 H 0.070 0.930 48 H 0.072 0.928 49 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.818 13.635 -5.155 15.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.270 6.270 3 C -0.032 4.032 4 C 0.022 3.978 5 N -0.265 5.265 6 C -0.356 4.356 7 H 0.085 0.915 8 C -0.192 4.192 9 N -0.533 5.533 10 Si 0.720 3.280 11 H -0.211 1.211 12 H -0.217 1.217 13 H -0.204 1.204 14 C -0.001 4.001 15 C 0.271 3.729 16 O -0.367 6.367 17 N -0.314 5.314 18 C 0.099 3.901 19 C -0.325 4.325 20 C -0.131 4.131 21 N -0.126 5.126 22 N -0.177 5.177 23 C 0.057 3.943 24 C -0.170 4.170 25 C -0.160 4.160 26 C -0.157 4.157 27 C -0.169 4.169 28 H 0.041 0.959 29 H 0.050 0.950 30 H 0.093 0.907 31 H 0.043 0.957 32 H 0.055 0.945 33 H 0.076 0.924 34 H 0.071 0.929 35 H 0.063 0.937 36 H 0.077 0.923 37 H 0.150 0.850 38 H 0.237 0.763 39 H 0.188 0.812 40 H 0.196 0.804 41 H 0.113 0.887 42 H 0.103 0.897 43 H 0.091 0.909 44 H 0.088 0.912 45 H 0.089 0.911 46 H 0.085 0.915 47 H 0.089 0.911 48 H 0.091 0.909 49 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 4.768 13.826 -5.499 15.624 hybrid contribution -0.579 -0.946 -0.176 1.123 sum 4.188 12.879 -5.674 14.684 Atomic orbital electron populations 1.22577 0.83704 1.01596 0.98259 1.88166 1.17070 1.26967 1.94807 1.23284 0.97651 0.84887 0.97407 1.21028 0.89432 0.96693 0.90654 1.43356 1.72734 1.02788 1.07627 1.18988 1.38735 0.81465 0.96418 0.91512 1.24884 0.97614 0.97648 0.99022 1.70008 1.33544 1.40457 1.09319 0.86480 0.80398 0.84122 0.76961 1.21118 1.21682 1.20421 1.21009 0.85767 0.95476 0.97848 1.24186 0.93292 0.75182 0.80209 1.90524 1.60924 1.52520 1.32764 1.43981 1.07665 1.51949 1.27821 1.18464 0.86052 0.93919 0.91690 1.21686 0.92239 1.13782 1.04794 1.23704 0.98909 0.96115 0.94333 1.77269 0.94164 1.26109 1.15094 1.48753 1.08646 1.41685 1.18577 1.21869 0.96645 0.94249 0.81585 1.22753 1.01713 0.98327 0.94202 1.22477 1.02065 0.94144 0.97279 1.22305 1.00466 0.97883 0.95039 1.22487 1.00859 0.93332 1.00223 0.95871 0.94972 0.90660 0.95739 0.94480 0.92367 0.92930 0.93713 0.92257 0.85048 0.76335 0.81234 0.80387 0.88735 0.89726 0.90947 0.91177 0.91085 0.91485 0.91137 0.90895 0.90335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.61 11.01 101.05 1.11 1.72 16 2 O -0.35 -7.61 10.18 -35.23 -0.36 -7.96 16 3 C 0.05 0.90 6.28 37.16 0.23 1.13 16 4 C 0.15 3.06 6.11 -4.04 -0.02 3.04 16 5 N -0.55 -13.03 1.93 -174.61 -0.34 -13.37 16 6 C -0.23 -6.11 8.98 -15.06 -0.14 -6.24 16 7 H 0.07 1.87 7.96 -52.49 -0.42 1.46 16 8 C 0.01 0.18 4.83 -17.43 -0.08 0.09 16 9 N -0.89 -23.95 11.45 55.49 0.64 -23.32 16 10 Si 0.89 21.75 29.63 -169.99 -5.04 16.71 16 11 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 12 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 13 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 14 C 0.13 2.77 5.76 -5.19 -0.03 2.74 16 15 C 0.48 9.80 7.86 -10.98 -0.09 9.71 16 16 O -0.50 -11.59 13.56 5.55 0.08 -11.52 16 17 N -0.66 -10.98 5.42 -11.46 -0.06 -11.04 16 18 C 0.32 5.47 7.66 -153.16 -1.17 4.30 16 19 C -0.29 -5.31 9.65 -39.78 -0.38 -5.70 16 20 C 0.06 0.86 12.01 -17.40 -0.21 0.65 16 21 N -0.30 -4.78 12.02 30.60 0.37 -4.41 16 22 N -0.39 -5.78 3.21 -52.82 -0.17 -5.95 16 23 C 0.16 1.81 3.75 -66.81 -0.25 1.56 16 24 C -0.13 -1.38 6.52 -25.03 -0.16 -1.54 16 25 C -0.12 -0.98 6.91 -24.70 -0.17 -1.15 16 26 C -0.12 -1.00 6.83 -25.07 -0.17 -1.17 16 27 C -0.13 -1.29 6.54 -25.61 -0.17 -1.46 16 28 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 29 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 31 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.06 1.24 8.04 -51.93 -0.42 0.83 16 34 H 0.05 0.98 8.07 -51.93 -0.42 0.56 16 35 H 0.25 6.64 8.31 -40.82 -0.34 6.30 16 36 H 0.06 1.10 8.10 -51.93 -0.42 0.68 16 37 H 0.13 3.07 5.32 -51.93 -0.28 2.80 16 38 H 0.40 5.31 7.55 -40.82 -0.31 5.00 16 39 H 0.17 3.43 5.83 -52.49 -0.31 3.12 16 40 H 0.18 2.14 8.06 -52.48 -0.42 1.71 16 41 H 0.09 0.94 6.85 -51.93 -0.36 0.58 16 42 H 0.08 1.05 7.72 -51.93 -0.40 0.65 16 43 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 46 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 47 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 48 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 49 H 0.08 0.93 7.83 -51.93 -0.41 0.52 16 LS Contribution 398.64 15.07 6.01 6.01 Total: -1.00 -32.23 398.64 -8.52 -40.75 By element: Atomic # 1 Polarization: 14.36 SS G_CDS: -7.94 Total: 6.42 kcal Atomic # 6 Polarization: 9.38 SS G_CDS: -1.70 Total: 7.68 kcal Atomic # 7 Polarization: -58.52 SS G_CDS: 0.43 Total: -58.09 kcal Atomic # 8 Polarization: -19.20 SS G_CDS: -0.28 Total: -19.48 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.04 Total: 16.71 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -32.23 -8.52 -40.75 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459537823.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.105 kcal (2) G-P(sol) polarization free energy of solvation -32.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.748 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds