Wall clock time and date at job start Tue Mar 31 2020 19:32:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42900 * 113.99732 * 2 1 4 4 C 1.53002 * 109.47271 * 180.02562 * 3 2 1 5 5 N 1.46501 * 109.46903 * 65.00261 * 4 3 2 6 6 C 1.36931 * 120.00080 * 270.00218 * 5 4 3 7 7 H 1.08001 * 120.00201 * 328.61069 * 6 5 4 8 8 C 1.38813 * 120.00275 * 148.61188 * 6 5 4 9 9 N 1.31616 * 120.00222 * 333.12741 * 8 6 5 10 10 Si 1.86799 * 120.00100 * 153.12847 * 8 6 5 11 11 H 1.48500 * 109.47523 * 84.99830 * 10 8 6 12 12 H 1.48500 * 109.47265 * 204.99952 * 10 8 6 13 13 H 1.48506 * 109.47302 * 324.99905 * 10 8 6 14 14 C 1.46503 * 119.99937 * 89.99981 * 5 4 3 15 15 C 1.50703 * 109.46863 * 86.27797 * 14 5 4 16 16 O 1.21286 * 119.99895 * 0.02562 * 15 14 5 17 17 N 1.34775 * 119.99847 * 179.71948 * 15 14 5 18 18 C 1.39472 * 119.99991 * 180.27184 * 17 15 14 19 19 C 1.36107 * 126.21545 * 0.03679 * 18 17 15 20 20 C 1.39756 * 107.82644 * 179.97438 * 19 18 17 21 21 N 1.30849 * 108.32755 * 359.97438 * 20 19 18 22 22 N 1.35263 * 126.21344 * 179.71765 * 18 17 15 23 23 C 1.46498 * 126.04881 * 359.96625 * 22 18 17 24 24 C 1.54274 * 110.03345 * 237.90669 * 23 22 18 25 25 C 1.54959 * 104.15907 * 217.13526 * 24 23 22 26 26 C 1.54898 * 102.77614 * 37.88916 * 25 24 23 27 27 C 1.53873 * 110.03150 * 120.68842 * 23 22 18 28 28 H 1.08996 * 109.46744 * 299.99407 * 1 2 3 29 29 H 1.08991 * 109.47351 * 59.99568 * 1 2 3 30 30 H 1.09001 * 109.46560 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47252 * 60.00220 * 3 2 1 32 32 H 1.09000 * 109.47632 * 300.00697 * 3 2 1 33 33 H 1.08999 * 109.47181 * 305.00389 * 4 3 2 34 34 H 1.08996 * 109.46964 * 185.00120 * 4 3 2 35 35 H 0.96999 * 120.00454 * 179.97438 * 9 8 6 36 36 H 1.08998 * 109.47163 * 326.28108 * 14 5 4 37 37 H 1.09002 * 109.46909 * 206.27563 * 14 5 4 38 38 H 0.97007 * 120.00104 * 0.28038 * 17 15 14 39 39 H 1.07997 * 126.08486 * 0.02562 * 19 18 17 40 40 H 1.08004 * 125.83958 * 180.02562 * 20 19 18 41 41 H 1.09002 * 110.01643 * 359.30033 * 23 22 18 42 42 H 1.09000 * 110.48022 * 335.78336 * 24 23 22 43 43 H 1.09001 * 110.48411 * 98.42599 * 24 23 22 44 44 H 1.08993 * 110.72541 * 279.57622 * 25 24 23 45 45 H 1.09000 * 110.76548 * 156.21883 * 25 24 23 46 46 H 1.09000 * 110.48579 * 203.40281 * 26 25 24 47 47 H 1.09004 * 110.59667 * 80.81825 * 26 25 24 48 48 H 1.09000 * 110.03645 * 238.56800 * 27 23 22 49 49 H 1.08999 * 110.03410 * 359.95193 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1848 -0.0006 5 7 3.9757 0.5646 -1.2528 6 6 4.0968 -0.7967 -1.3371 7 1 4.3716 -1.3695 -0.4637 8 6 3.8663 -1.4406 -2.5450 9 7 3.0581 -0.9029 -3.4337 10 14 4.7033 -3.0704 -2.9092 11 1 3.9031 -4.1786 -2.3289 12 1 4.8105 -3.2543 -4.3789 13 1 6.0619 -3.0741 -2.3095 14 6 4.2863 1.4010 -2.4148 15 6 5.7206 1.8567 -2.3367 16 8 6.4151 1.5161 -1.4025 17 7 6.2333 2.6378 -3.3080 18 6 7.5624 3.0550 -3.2386 19 6 8.4506 2.7497 -2.2536 20 6 9.6656 3.3650 -2.5673 21 7 9.5192 4.0142 -3.6939 22 7 8.2044 3.8315 -4.1411 23 6 7.6265 4.3846 -5.3684 24 6 8.4390 3.9157 -6.5931 25 6 8.4409 5.1430 -7.5392 26 6 8.5733 6.3329 -6.5564 27 6 7.7114 5.9208 -5.3451 28 1 -0.3633 0.5137 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3632 -1.0277 0.0005 31 1 1.6886 1.8464 0.8900 32 1 1.6885 1.8465 -0.8899 33 1 3.8515 0.5683 0.8409 34 1 3.9784 2.1766 0.0889 35 1 2.8973 -1.3527 -4.2780 36 1 3.6288 2.2703 -2.4230 37 1 4.1375 0.8242 -3.3277 38 1 5.6779 2.9100 -4.0553 39 1 8.2521 2.1398 -1.3847 40 1 10.5709 3.3128 -1.9806 41 1 6.5876 4.0696 -5.4665 42 1 9.4568 3.6586 -6.2999 43 1 7.9523 3.0655 -7.0709 44 1 7.5051 5.2032 -8.0947 45 1 9.2928 5.1062 -8.2182 46 1 8.1849 7.2458 -7.0080 47 1 9.6125 6.4689 -6.2567 48 1 6.7139 6.3514 -5.4329 49 1 8.1819 6.2549 -4.4203 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000459537823.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:32:57 Heat of formation + Delta-G solvation = 11.380098 kcal Electronic energy + Delta-G solvation = -29984.620386 eV Core-core repulsion = 25949.067313 eV Total energy + Delta-G solvation = -4035.553072 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -42.50817 -40.46001 -38.80802 -38.65376 -36.91279 -35.74713 -33.50202 -33.02019 -31.09135 -29.92853 -29.74515 -28.32500 -28.26458 -27.07812 -25.17458 -23.39487 -23.14245 -22.03767 -21.62591 -20.79404 -20.68681 -19.24755 -18.56358 -17.60847 -17.21416 -17.03673 -16.66407 -16.50835 -16.36316 -16.32317 -15.74919 -15.51631 -15.26715 -15.01040 -14.89107 -14.78458 -14.57526 -14.32263 -14.00577 -13.56022 -13.19426 -12.99763 -12.82380 -12.69886 -12.64281 -12.56290 -12.26421 -12.12655 -12.10476 -12.07665 -12.03790 -11.99693 -11.88439 -11.60819 -11.50453 -11.50111 -10.74913 -10.50946 -10.27749 -9.86057 -9.04245 -8.65164 -7.87825 -5.29602 0.77287 1.18439 1.43402 1.46703 1.57117 1.74665 2.12046 2.19534 2.54931 3.16497 3.31664 3.35515 3.53403 3.62344 3.74994 3.94341 4.00584 4.20819 4.39807 4.44282 4.44478 4.47404 4.51255 4.57878 4.60466 4.67020 4.68437 4.69867 4.72110 4.81756 4.83156 4.85016 4.93930 4.97857 5.01109 5.10729 5.16735 5.19382 5.21674 5.29262 5.37287 5.42330 5.75241 5.81642 6.07374 6.34489 6.45472 6.65062 6.83073 7.10859 7.31896 7.80685 8.29263 9.14117 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.013056 B = 0.003098 C = 0.002955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2144.077100 B = 9035.329068 C = 9474.462509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.395 6.395 3 C 0.054 3.946 4 C 0.146 3.854 5 N -0.564 5.564 6 C -0.235 4.235 7 H 0.043 0.957 8 C -0.025 4.025 9 N -0.901 5.901 10 Si 0.933 3.067 11 H -0.284 1.284 12 H -0.285 1.285 13 H -0.291 1.291 14 C 0.136 3.864 15 C 0.491 3.509 16 O -0.533 6.533 17 N -0.647 5.647 18 C 0.307 3.693 19 C -0.319 4.319 20 C 0.057 3.943 21 N -0.307 5.307 22 N -0.377 5.377 23 C 0.144 3.856 24 C -0.132 4.132 25 C -0.113 4.113 26 C -0.116 4.116 27 C -0.127 4.127 28 H 0.052 0.948 29 H 0.033 0.967 30 H 0.078 0.922 31 H 0.059 0.941 32 H 0.036 0.964 33 H 0.041 0.959 34 H 0.071 0.929 35 H 0.253 0.747 36 H 0.088 0.912 37 H 0.114 0.886 38 H 0.419 0.581 39 H 0.146 0.854 40 H 0.209 0.791 41 H 0.112 0.888 42 H 0.061 0.939 43 H 0.076 0.924 44 H 0.088 0.912 45 H 0.078 0.922 46 H 0.087 0.913 47 H 0.058 0.942 48 H 0.094 0.906 49 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.278 15.507 -6.549 17.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.314 6.314 3 C -0.025 4.025 4 C 0.020 3.980 5 N -0.282 5.282 6 C -0.365 4.365 7 H 0.061 0.939 8 C -0.222 4.222 9 N -0.546 5.546 10 Si 0.763 3.237 11 H -0.210 1.210 12 H -0.211 1.211 13 H -0.218 1.218 14 C 0.005 3.995 15 C 0.277 3.723 16 O -0.406 6.406 17 N -0.298 5.298 18 C 0.085 3.915 19 C -0.351 4.351 20 C -0.129 4.129 21 N -0.130 5.130 22 N -0.166 5.166 23 C 0.043 3.957 24 C -0.170 4.170 25 C -0.151 4.151 26 C -0.153 4.153 27 C -0.165 4.165 28 H 0.071 0.929 29 H 0.051 0.949 30 H 0.097 0.903 31 H 0.077 0.923 32 H 0.054 0.946 33 H 0.060 0.940 34 H 0.090 0.910 35 H 0.062 0.938 36 H 0.106 0.894 37 H 0.131 0.869 38 H 0.257 0.743 39 H 0.163 0.837 40 H 0.226 0.774 41 H 0.129 0.871 42 H 0.080 0.920 43 H 0.094 0.906 44 H 0.106 0.894 45 H 0.097 0.903 46 H 0.106 0.894 47 H 0.077 0.923 48 H 0.112 0.888 49 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 4.218 15.747 -6.943 17.719 hybrid contribution -0.375 -1.459 0.275 1.531 sum 3.843 14.288 -6.668 16.228 Atomic orbital electron populations 1.22721 0.81507 1.02395 0.99689 1.88098 1.19663 1.28512 1.95153 1.23181 0.96044 0.84399 0.98893 1.21108 0.91041 0.96994 0.88867 1.43455 1.73547 1.02127 1.09036 1.18917 1.38559 0.83187 0.95879 0.93930 1.25243 0.98271 0.99559 0.99104 1.70058 1.34059 1.41094 1.09349 0.85833 0.78928 0.82172 0.76809 1.21046 1.21054 1.21770 1.20937 0.86664 0.95825 0.96117 1.23782 0.92877 0.75299 0.80301 1.90533 1.61556 1.54102 1.34405 1.43474 1.07843 1.50968 1.27506 1.18411 0.85986 0.94692 0.92385 1.21635 0.93948 1.14699 1.04828 1.24110 0.99177 0.95226 0.94338 1.77244 0.94682 1.25971 1.15066 1.49003 1.08072 1.40655 1.18866 1.22371 0.97521 0.95436 0.80411 1.22742 1.00147 0.99730 0.94371 1.22472 1.03406 0.92392 0.96825 1.22298 0.99608 0.98925 0.94512 1.22479 1.02175 0.91975 0.99861 0.92917 0.94877 0.90333 0.92324 0.94573 0.94022 0.91037 0.93790 0.89420 0.86882 0.74295 0.83695 0.77443 0.87062 0.91988 0.90554 0.89355 0.90302 0.89403 0.92318 0.88789 0.92528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.08 11.01 113.37 1.25 2.33 16 2 O -0.40 -16.82 10.18 -148.98 -1.52 -18.33 16 3 C 0.05 1.97 6.28 71.98 0.45 2.42 16 4 C 0.15 5.98 6.11 86.38 0.53 6.51 16 5 N -0.56 -26.98 1.93 -706.33 -1.37 -28.35 16 6 C -0.23 -12.93 8.98 84.03 0.75 -12.17 16 7 H 0.04 2.50 7.96 -2.91 -0.02 2.47 16 8 C -0.02 -1.34 4.83 84.86 0.41 -0.93 16 9 N -0.90 -48.49 11.45 21.65 0.25 -48.24 16 10 Si 0.93 45.22 29.63 68.60 2.03 47.26 16 11 H -0.28 -13.61 7.11 99.48 0.71 -12.91 16 12 H -0.28 -13.42 7.11 99.48 0.71 -12.71 16 13 H -0.29 -14.59 7.11 99.48 0.71 -13.88 16 14 C 0.14 5.69 5.76 85.63 0.49 6.18 16 15 C 0.49 19.82 7.86 87.66 0.69 20.51 16 16 O -0.53 -25.42 13.56 -3.05 -0.04 -25.46 16 17 N -0.65 -20.91 5.42 -308.56 -1.67 -22.58 16 18 C 0.31 10.39 7.66 131.32 1.01 11.40 16 19 C -0.32 -11.71 9.65 22.14 0.21 -11.50 16 20 C 0.06 1.74 12.01 85.21 1.02 2.76 16 21 N -0.31 -9.43 12.02 -57.09 -0.69 -10.11 16 22 N -0.38 -10.87 3.21 -321.02 -1.03 -11.90 16 23 C 0.14 2.99 3.75 45.72 0.17 3.16 16 24 C -0.13 -2.51 6.52 31.70 0.21 -2.31 16 25 C -0.11 -1.50 6.91 31.91 0.22 -1.28 16 26 C -0.12 -1.64 6.83 31.67 0.22 -1.42 16 27 C -0.13 -2.21 6.54 31.32 0.20 -2.00 16 28 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 29 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 31 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.04 1.81 8.04 -2.39 -0.02 1.79 16 34 H 0.07 2.61 8.07 -2.39 -0.02 2.59 16 35 H 0.25 13.19 8.31 -92.71 -0.77 12.42 16 36 H 0.09 3.10 8.10 -2.39 -0.02 3.08 16 37 H 0.11 5.27 5.32 -2.39 -0.01 5.25 16 38 H 0.42 10.38 7.55 -92.70 -0.70 9.68 16 39 H 0.15 6.12 5.83 -2.91 -0.02 6.10 16 40 H 0.21 4.76 8.06 -2.91 -0.02 4.73 16 41 H 0.11 1.92 6.85 -2.39 -0.02 1.90 16 42 H 0.06 1.48 7.72 -2.39 -0.02 1.46 16 43 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 44 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 45 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 46 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 47 H 0.06 0.98 8.14 -2.38 -0.02 0.96 16 48 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 49 H 0.06 1.26 7.83 -2.39 -0.02 1.24 16 Total: -1.00 -70.89 398.64 4.06 -66.83 By element: Atomic # 1 Polarization: 27.01 SS G_CDS: 0.25 Total: 27.26 kcal Atomic # 6 Polarization: 15.80 SS G_CDS: 7.84 Total: 23.64 kcal Atomic # 7 Polarization: -116.69 SS G_CDS: -4.51 Total: -121.19 kcal Atomic # 8 Polarization: -42.24 SS G_CDS: -1.56 Total: -43.79 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.26 kcal Total: -70.89 4.06 -66.83 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459537823.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.210 kcal (2) G-P(sol) polarization free energy of solvation -70.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.830 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds